Wall clock time and date at job start Mon Mar 30 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46878 * 299.99903 * 3 2 1 6 6 H 1.48500 * 109.47189 * 59.99535 * 3 2 1 7 7 C 1.37881 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47077 * 179.97438 * 9 7 2 11 11 O 1.42896 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.42899 * 114.00287 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47354 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.83288 * 305.62978 * 13 12 11 15 15 C 1.54001 * 109.79502 * 184.80492 * 13 12 11 16 16 C 1.54423 * 104.22332 * 239.20858 * 15 13 12 17 17 H 1.08999 * 107.03575 * 97.29723 * 16 15 13 18 18 C 1.49399 * 111.25407 * 215.24714 * 16 15 13 19 19 C 1.50692 * 118.04274 * 96.13124 * 18 16 15 20 20 C 1.52493 * 112.46650 * 35.57350 * 19 18 16 21 21 C 1.53308 * 107.92718 * 302.62326 * 20 19 18 22 22 C 1.52116 * 103.96056 * 343.12737 * 16 15 13 23 23 H 1.08995 * 109.78088 * 147.85704 * 22 16 15 24 24 O 1.43275 * 109.79519 * 66.45845 * 13 12 11 25 25 H 0.97000 * 119.99938 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46725 * 59.99903 * 9 7 2 27 27 H 1.08996 * 109.47157 * 299.99652 * 9 7 2 28 28 H 1.09000 * 109.46712 * 59.99865 * 10 9 7 29 29 H 1.08996 * 109.47085 * 299.99992 * 10 9 7 30 30 H 1.08998 * 109.46972 * 59.99772 * 12 11 10 31 31 H 1.09003 * 109.46587 * 300.00281 * 12 11 10 32 32 H 1.08999 * 110.48067 * 357.89151 * 15 13 12 33 33 H 1.09000 * 110.48076 * 120.52668 * 15 13 12 34 34 H 1.09007 * 107.72466 * 333.96145 * 18 16 15 35 35 H 1.09000 * 107.69507 * 218.27671 * 18 16 15 36 36 H 1.09004 * 108.88384 * 274.80269 * 19 18 16 37 37 H 1.09000 * 108.80298 * 156.29142 * 19 18 16 38 38 H 1.08997 * 109.76932 * 183.01517 * 20 19 18 39 39 H 1.08996 * 109.80804 * 62.25555 * 20 19 18 40 40 H 1.08997 * 109.69302 * 308.46410 * 21 20 19 41 41 H 1.08989 * 109.72513 * 187.89124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 8 1.5306 -4.8997 -0.0001 12 6 2.3705 -6.0558 0.0005 13 6 1.5032 -7.3162 0.0004 14 1 0.8012 -7.2821 0.8335 15 6 2.3970 -8.5643 0.1223 16 6 2.0847 -9.3805 -1.1508 17 1 2.8634 -9.1490 -1.8776 18 6 2.1257 -10.8486 -0.8766 19 6 0.8257 -11.5504 -0.5798 20 6 -0.3398 -10.9822 -1.3824 21 6 -0.4432 -9.4851 -1.0690 22 6 0.7784 -8.7871 -1.6559 23 1 0.7456 -8.8400 -2.7441 24 8 0.7850 -7.4109 -1.2357 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8894 30 1 2.9991 -6.0478 0.8909 31 1 3.0004 -6.0476 -0.8891 32 1 3.4489 -8.2795 0.1442 33 1 2.1365 -9.1343 1.0142 34 1 2.7909 -11.0092 -0.0281 35 1 2.5753 -11.3349 -1.7423 36 1 0.6048 -11.4494 0.4828 37 1 0.9353 -12.6085 -0.8178 38 1 -1.2641 -11.4836 -1.0957 39 1 -0.1586 -11.1242 -2.4478 40 1 -0.4675 -9.3367 0.0106 41 1 -1.3495 -9.0773 -1.5163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379227334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:30 Heat of formation + Delta-G solvation = -143.828007 kcal Electronic energy + Delta-G solvation = -18988.442513 eV Core-core repulsion = 16059.154034 eV Total energy + Delta-G solvation = -2929.288479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52131 -38.88550 -37.09105 -35.38199 -33.85481 -32.33314 -30.84380 -30.76874 -27.04872 -25.84239 -23.86459 -23.22421 -22.95391 -21.98579 -19.75053 -18.75221 -17.58829 -17.17888 -16.99301 -16.62974 -16.53469 -16.08226 -15.72706 -15.27784 -14.80547 -14.30655 -14.29555 -14.00933 -13.85425 -13.43116 -13.08991 -12.85969 -12.76173 -12.58172 -12.54993 -12.35823 -12.20147 -12.13781 -11.94788 -11.48337 -11.38496 -11.28595 -11.03830 -10.99309 -10.68264 -10.44577 -10.40128 -8.24682 -6.38677 1.40188 1.42146 1.55710 2.36762 2.77886 2.93815 3.08805 3.40881 3.68713 3.81098 3.97175 4.10395 4.13448 4.18635 4.22340 4.27658 4.36720 4.41239 4.44688 4.53373 4.60248 4.68616 4.77263 4.86736 4.90798 4.95282 5.01400 5.06657 5.13183 5.20675 5.25480 5.34849 5.38452 5.47869 5.53286 5.54796 5.71091 6.07448 6.13782 6.43894 6.77450 7.31284 8.88983 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.057395 B = 0.003298 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.734348 B = 8487.957426 C = 8782.812236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.414 6.414 12 C 0.053 3.947 13 C 0.079 3.921 14 H 0.062 0.938 15 C -0.135 4.135 16 C -0.103 4.103 17 H 0.077 0.923 18 C -0.102 4.102 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.136 4.136 22 C 0.076 3.924 23 H 0.093 0.907 24 O -0.393 6.393 25 H 0.266 0.734 26 H -0.011 1.011 27 H -0.007 1.007 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -25.634 -0.996 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.087 0.913 9 C -0.010 4.010 10 C 0.009 3.991 11 O -0.334 6.334 12 C -0.023 4.023 13 C 0.021 3.979 14 H 0.080 0.920 15 C -0.173 4.173 16 C -0.122 4.122 17 H 0.095 0.905 18 C -0.139 4.139 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.174 4.174 22 C 0.019 3.981 23 H 0.111 0.889 24 O -0.313 6.313 25 H 0.075 0.925 26 H 0.007 0.993 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.443 -25.375 -1.103 25.976 hybrid contribution 0.174 1.134 0.045 1.148 sum 5.617 -24.241 -1.059 24.906 Atomic orbital electron populations 1.70150 1.08167 1.28085 1.50917 1.26117 0.95862 1.03882 0.94217 0.85196 0.78999 0.77667 0.77913 1.18070 1.20224 1.20062 1.21502 0.93764 0.91321 1.51738 0.91257 1.18943 0.94661 0.92135 0.95267 1.22482 0.94766 0.82736 0.99140 1.87932 1.35449 1.14550 1.95457 1.22990 0.93127 0.85041 1.01190 1.22696 0.93473 0.94226 0.87492 0.92008 1.23083 1.00726 0.93766 0.99707 1.21264 0.96936 0.96701 0.97265 0.90494 1.20189 0.98732 0.91815 1.03174 1.20979 0.93937 1.00143 1.00266 1.21431 0.99277 0.93339 1.00903 1.21924 0.97525 0.96941 1.01033 1.22515 0.95206 0.80790 0.99620 0.88917 1.88799 1.75838 1.27442 1.39262 0.92505 0.99256 0.98824 0.93170 0.93945 0.90535 0.92927 0.88726 0.88571 0.90495 0.91278 0.92302 0.90173 0.90686 0.91157 0.92268 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.23 13.29 21.45 0.28 -58.95 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -32.45 9.11 25.60 0.23 -32.22 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.59 5.34 29.85 0.16 1.75 16 10 C 0.08 3.99 5.88 71.98 0.42 4.41 16 11 O -0.41 -18.70 10.33 -146.49 -1.51 -20.22 16 12 C 0.05 1.73 5.38 71.98 0.39 2.11 16 13 C 0.08 2.26 3.55 30.93 0.11 2.37 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.14 -2.50 5.98 31.42 0.19 -2.31 16 16 C -0.10 -1.77 2.86 -11.75 -0.03 -1.80 16 17 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 18 C -0.10 -1.19 5.26 28.69 0.15 -1.04 16 19 C -0.12 -1.30 5.81 29.68 0.17 -1.13 16 20 C -0.11 -1.54 6.00 30.53 0.18 -1.35 16 21 C -0.14 -2.77 5.53 30.51 0.17 -2.60 16 22 C 0.08 1.74 3.45 30.12 0.10 1.84 16 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 24 O -0.39 -13.04 10.73 -146.49 -1.57 -14.61 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.48 7.69 -2.39 -0.02 1.46 16 33 H 0.10 1.45 7.82 -2.39 -0.02 1.43 16 34 H 0.08 0.75 7.62 -2.38 -0.02 0.73 16 35 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 40 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -72.54 324.04 2.90 -69.65 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.96 Total: 6.76 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 2.71 Total: -29.66 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.28 Total: -58.95 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -3.09 Total: -34.83 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.54 2.90 -69.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379227334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.183 kcal (2) G-P(sol) polarization free energy of solvation -72.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds