Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99758 * 2 1 4 4 H 1.48502 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46866 * 299.99595 * 3 2 1 6 6 H 1.48496 * 109.47219 * 59.99852 * 3 2 1 7 7 C 1.37876 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47070 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.42906 * 113.99902 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46987 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.97061 * 305.39378 * 13 12 11 15 15 C 1.55373 * 109.87083 * 184.33673 * 13 12 11 16 16 C 1.53879 * 101.14749 * 218.99445 * 15 13 12 17 17 H 1.09000 * 112.16614 * 279.68465 * 16 15 13 18 18 C 1.52015 * 114.90704 * 151.23872 * 16 15 13 19 19 C 1.53675 * 107.32041 * 186.34452 * 18 16 15 20 20 C 1.52588 * 111.48132 * 58.31392 * 19 18 16 21 21 C 1.53778 * 111.27361 * 305.12470 * 20 19 18 22 22 C 1.51172 * 107.48708 * 57.19474 * 21 20 19 23 23 H 1.08998 * 108.36186 * 52.99864 * 22 21 20 24 24 O 1.41439 * 118.46998 * 177.41275 * 22 21 20 25 25 H 0.97006 * 119.99420 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47252 * 59.99750 * 9 7 2 27 27 H 1.08996 * 109.47209 * 299.99859 * 9 7 2 28 28 H 1.08993 * 109.47457 * 59.99821 * 10 9 7 29 29 H 1.09003 * 109.47483 * 299.99495 * 10 9 7 30 30 H 1.08990 * 109.47271 * 59.99774 * 12 11 10 31 31 H 1.09005 * 109.46572 * 299.99320 * 12 11 10 32 32 H 1.09000 * 111.08598 * 101.02537 * 15 13 12 33 33 H 1.09003 * 111.08174 * 336.96017 * 15 13 12 34 34 H 1.08999 * 109.88716 * 66.89016 * 18 16 15 35 35 H 1.09001 * 109.88295 * 305.80123 * 18 16 15 36 36 H 1.09001 * 109.07810 * 297.80284 * 19 18 16 37 37 H 1.09000 * 109.02396 * 178.79209 * 19 18 16 38 38 H 1.09002 * 109.11002 * 65.56844 * 20 19 18 39 39 H 1.09000 * 109.10726 * 184.68274 * 20 19 18 40 40 H 1.09001 * 109.86981 * 176.62233 * 21 20 19 41 41 H 1.09006 * 109.86727 * 297.66383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5308 -4.8995 -0.0001 12 6 2.3709 -6.0557 0.0005 13 6 1.5036 -7.3162 -0.0009 14 1 0.8029 -7.2868 0.8335 15 6 2.4045 -8.5772 0.1102 16 6 1.6842 -9.5427 -0.8472 17 1 0.8180 -10.0133 -0.3819 18 6 2.5820 -10.5735 -1.5122 19 6 1.7261 -11.3311 -2.5394 20 6 1.1246 -10.3835 -3.5731 21 6 0.3267 -9.2553 -2.8982 22 6 1.2645 -8.5374 -1.9545 23 1 2.1540 -8.2438 -2.5118 24 8 0.7791 -7.4126 -1.2476 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 2.9995 -6.0476 0.8908 31 1 3.0007 -6.0475 -0.8892 32 1 2.4107 -8.9663 1.1283 33 1 3.4173 -8.3669 -0.2336 34 1 2.9658 -11.2681 -0.7650 35 1 3.4100 -10.0743 -2.0156 36 1 0.9202 -11.8487 -2.0191 37 1 2.3500 -12.0651 -3.0494 38 1 1.9276 -9.9468 -4.1668 39 1 0.4611 -10.9463 -4.2296 40 1 -0.0418 -8.5599 -3.6522 41 1 -0.5101 -9.6759 -2.3404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379227335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = -120.810330 kcal Electronic energy + Delta-G solvation = -18937.394498 eV Core-core repulsion = 16009.104141 eV Total energy + Delta-G solvation = -2928.290357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59343 -37.39272 -36.23518 -33.22743 -32.77362 -30.54951 -29.92708 -29.16228 -25.67559 -24.20830 -22.51697 -21.55892 -21.28693 -20.65234 -20.10188 -16.78621 -16.59555 -15.97172 -15.38607 -15.25794 -14.99398 -14.72858 -14.49975 -14.02224 -13.84308 -13.22526 -12.98410 -12.47920 -12.28798 -12.20762 -12.10470 -11.87647 -11.44373 -11.23364 -11.07905 -10.97385 -10.87691 -10.81968 -10.63229 -10.45094 -10.24516 -10.04489 -9.44509 -9.30649 -9.12519 -8.83747 -8.31807 -5.98962 -4.02467 3.32507 3.39143 3.43296 3.58504 4.17451 4.30399 4.38153 4.47702 4.67418 4.77304 4.82888 4.99436 5.09635 5.14387 5.19768 5.25655 5.36836 5.38154 5.45563 5.52192 5.55906 5.62634 5.69329 5.70690 5.81628 5.86704 5.87686 5.92763 6.06660 6.15478 6.22951 6.32032 6.36003 6.94931 7.15238 7.61450 7.85867 7.88114 8.17967 8.41213 9.04505 9.60872 11.12767 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048033 B = 0.003320 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.787533 B = 8431.067895 C = 8659.890725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.383 6.383 12 C 0.052 3.948 13 C 0.084 3.916 14 H 0.091 0.909 15 C -0.141 4.141 16 C -0.128 4.128 17 H 0.089 0.911 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.112 4.112 22 C 0.074 3.926 23 H 0.053 0.947 24 O -0.351 6.351 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -24.020 -3.288 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.302 6.302 12 C -0.025 4.025 13 C 0.027 3.973 14 H 0.109 0.891 15 C -0.179 4.179 16 C -0.146 4.146 17 H 0.108 0.892 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.150 4.150 22 C 0.015 3.985 23 H 0.071 0.929 24 O -0.270 6.270 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.538 -23.762 -3.370 24.426 hybrid contribution 0.940 0.903 0.091 1.307 sum 5.479 -22.860 -3.279 23.735 Atomic orbital electron populations 1.70006 1.06061 1.26585 1.50297 1.25008 0.94881 0.99285 0.95201 0.86472 0.79984 0.83526 0.77623 1.19728 1.20917 1.20931 1.21101 0.93009 0.90607 1.51368 0.92547 1.19065 0.94261 0.89402 0.98502 1.22873 0.96389 0.83442 0.98000 1.87986 1.33521 1.13546 1.95189 1.22748 0.93090 0.86946 0.99753 1.23211 0.93518 0.92954 0.87646 0.89080 1.22939 0.99482 0.94584 1.00896 1.22757 0.99453 0.96332 0.96105 0.89223 1.21433 0.97699 0.97474 0.97850 1.21564 0.99353 0.97984 0.96927 1.21515 0.99623 0.96319 0.97846 1.21363 0.98171 0.96929 0.98523 1.22288 0.96633 0.85872 0.93690 0.92884 1.88472 1.61246 1.45761 1.31562 0.92930 0.95658 0.95755 0.94857 0.94838 0.93053 0.93774 0.89756 0.90217 0.91510 0.91488 0.91965 0.91867 0.91870 0.91391 0.90880 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -15.37 9.11 -34.44 -0.31 -15.68 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.70 5.34 -27.89 -0.15 0.55 16 10 C 0.07 1.60 5.88 37.15 0.22 1.82 16 11 O -0.38 -8.46 10.33 -37.10 -0.38 -8.84 16 12 C 0.05 0.86 5.51 37.16 0.20 1.07 16 13 C 0.08 1.20 3.80 -25.47 -0.10 1.11 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 15 C -0.14 -1.43 6.13 -25.01 -0.15 -1.58 16 16 C -0.13 -1.22 2.76 -89.43 -0.25 -1.47 16 17 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.11 -0.81 5.58 -26.88 -0.15 -0.96 16 19 C -0.12 -0.83 5.84 -26.59 -0.16 -0.99 16 20 C -0.12 -0.89 5.83 -26.54 -0.15 -1.05 16 21 C -0.11 -1.14 5.97 -27.25 -0.16 -1.31 16 22 C 0.07 0.89 2.80 -26.42 -0.07 0.82 16 23 H 0.05 0.66 7.80 -51.93 -0.41 0.25 16 24 O -0.35 -5.77 11.03 -36.99 -0.41 -6.18 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.51 7.95 -51.93 -0.41 0.10 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -32.80 325.43 -9.03 -41.83 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -7.53 Total: -5.76 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.33 Total: -16.05 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.79 Total: -15.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.80 -9.03 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379227335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.980 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds