Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99758 * 2 1 4 4 H 1.48502 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46866 * 299.99595 * 3 2 1 6 6 H 1.48496 * 109.47219 * 59.99852 * 3 2 1 7 7 C 1.37876 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47070 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.42906 * 113.99902 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46987 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.97061 * 305.39378 * 13 12 11 15 15 C 1.55373 * 109.87083 * 184.33673 * 13 12 11 16 16 C 1.53879 * 101.14749 * 218.99445 * 15 13 12 17 17 H 1.09000 * 112.16614 * 279.68465 * 16 15 13 18 18 C 1.52015 * 114.90704 * 151.23872 * 16 15 13 19 19 C 1.53675 * 107.32041 * 186.34452 * 18 16 15 20 20 C 1.52588 * 111.48132 * 58.31392 * 19 18 16 21 21 C 1.53778 * 111.27361 * 305.12470 * 20 19 18 22 22 C 1.51172 * 107.48708 * 57.19474 * 21 20 19 23 23 H 1.08998 * 108.36186 * 52.99864 * 22 21 20 24 24 O 1.41439 * 118.46998 * 177.41275 * 22 21 20 25 25 H 0.97006 * 119.99420 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47252 * 59.99750 * 9 7 2 27 27 H 1.08996 * 109.47209 * 299.99859 * 9 7 2 28 28 H 1.08993 * 109.47457 * 59.99821 * 10 9 7 29 29 H 1.09003 * 109.47483 * 299.99495 * 10 9 7 30 30 H 1.08990 * 109.47271 * 59.99774 * 12 11 10 31 31 H 1.09005 * 109.46572 * 299.99320 * 12 11 10 32 32 H 1.09000 * 111.08598 * 101.02537 * 15 13 12 33 33 H 1.09003 * 111.08174 * 336.96017 * 15 13 12 34 34 H 1.08999 * 109.88716 * 66.89016 * 18 16 15 35 35 H 1.09001 * 109.88295 * 305.80123 * 18 16 15 36 36 H 1.09001 * 109.07810 * 297.80284 * 19 18 16 37 37 H 1.09000 * 109.02396 * 178.79209 * 19 18 16 38 38 H 1.09002 * 109.11002 * 65.56844 * 20 19 18 39 39 H 1.09000 * 109.10726 * 184.68274 * 20 19 18 40 40 H 1.09001 * 109.86981 * 176.62233 * 21 20 19 41 41 H 1.09006 * 109.86727 * 297.66383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5308 -4.8995 -0.0001 12 6 2.3709 -6.0557 0.0005 13 6 1.5036 -7.3162 -0.0009 14 1 0.8029 -7.2868 0.8335 15 6 2.4045 -8.5772 0.1102 16 6 1.6842 -9.5427 -0.8472 17 1 0.8180 -10.0133 -0.3819 18 6 2.5820 -10.5735 -1.5122 19 6 1.7261 -11.3311 -2.5394 20 6 1.1246 -10.3835 -3.5731 21 6 0.3267 -9.2553 -2.8982 22 6 1.2645 -8.5374 -1.9545 23 1 2.1540 -8.2438 -2.5118 24 8 0.7791 -7.4126 -1.2476 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8904 29 1 2.8720 -3.6043 -0.8895 30 1 2.9995 -6.0476 0.8908 31 1 3.0007 -6.0475 -0.8892 32 1 2.4107 -8.9663 1.1283 33 1 3.4173 -8.3669 -0.2336 34 1 2.9658 -11.2681 -0.7650 35 1 3.4100 -10.0743 -2.0156 36 1 0.9202 -11.8487 -2.0191 37 1 2.3500 -12.0651 -3.0494 38 1 1.9276 -9.9468 -4.1668 39 1 0.4611 -10.9463 -4.2296 40 1 -0.0418 -8.5599 -3.6522 41 1 -0.5101 -9.6759 -2.3404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379227335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = -141.116753 kcal Electronic energy + Delta-G solvation = -18938.275051 eV Core-core repulsion = 16009.104141 eV Total energy + Delta-G solvation = -2929.170910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52458 -38.89843 -37.25594 -35.38146 -33.74459 -32.27690 -30.69033 -30.57913 -27.08792 -25.98208 -23.38596 -22.91237 -22.35483 -22.02173 -20.91957 -18.73327 -17.88946 -17.19643 -16.81947 -16.64211 -16.43676 -16.14833 -15.67131 -15.03895 -14.80556 -14.33192 -14.21742 -14.02460 -13.68015 -13.62873 -12.97613 -12.90161 -12.80674 -12.73064 -12.43410 -12.30075 -12.13322 -12.05403 -11.82084 -11.54113 -11.47079 -11.39266 -11.33010 -10.84337 -10.68461 -10.44735 -10.41824 -8.25055 -6.39152 1.39924 1.41906 1.55450 2.36028 2.60490 2.90887 3.08397 3.49715 3.63466 3.78389 3.98614 4.06133 4.15533 4.16716 4.30243 4.33183 4.39032 4.39405 4.45627 4.49840 4.54001 4.61230 4.72594 4.82738 4.89914 4.92601 4.95176 5.06692 5.16164 5.20716 5.24593 5.29493 5.34114 5.36831 5.52052 5.54114 5.70493 6.07082 6.14448 6.43247 6.76947 7.30871 8.88570 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.048033 B = 0.003320 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.787533 B = 8431.067895 C = 8659.890725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.413 6.413 12 C 0.045 3.955 13 C 0.077 3.923 14 H 0.083 0.917 15 C -0.129 4.129 16 C -0.117 4.117 17 H 0.091 0.909 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.113 4.113 22 C 0.059 3.941 23 H 0.047 0.953 24 O -0.393 6.393 25 H 0.266 0.734 26 H -0.011 1.011 27 H -0.006 1.006 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.254 -25.239 -3.041 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.087 0.913 9 C -0.010 4.010 10 C 0.009 3.991 11 O -0.333 6.333 12 C -0.032 4.032 13 C 0.020 3.980 14 H 0.101 0.899 15 C -0.167 4.167 16 C -0.136 4.136 17 H 0.110 0.890 18 C -0.141 4.141 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.151 4.151 22 C 0.001 3.999 23 H 0.065 0.935 24 O -0.313 6.313 25 H 0.075 0.925 26 H 0.007 0.993 27 H 0.012 0.988 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.760 -25.014 -3.125 26.099 hybrid contribution 0.177 1.229 -0.011 1.242 sum 6.937 -23.785 -3.136 24.974 Atomic orbital electron populations 1.70157 1.08167 1.28087 1.50901 1.26121 0.95864 1.03887 0.94201 0.85195 0.78994 0.77655 0.77924 1.18069 1.20212 1.20050 1.21499 0.93759 0.91325 1.51769 0.91268 1.18938 0.94652 0.92127 0.95273 1.22483 0.94772 0.82784 0.99097 1.87936 1.35401 1.14519 1.95444 1.23110 0.93391 0.85597 1.01078 1.23342 0.93910 0.93861 0.86873 0.89922 1.22937 0.98954 0.92252 1.02526 1.22732 0.99907 0.96054 0.94864 0.89047 1.21449 0.97265 0.97109 0.98270 1.21570 0.99651 0.97853 0.96594 1.21509 0.99527 0.95659 0.98163 1.21419 0.98380 0.97391 0.97924 1.22558 0.96816 0.85776 0.94718 0.93543 1.88429 1.62274 1.47905 1.32667 0.92499 0.99296 0.98777 0.93131 0.94074 0.90493 0.93376 0.87386 0.89131 0.89658 0.91492 0.91482 0.90176 0.91950 0.90130 0.92455 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.26 13.29 21.45 0.28 -58.97 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.61 5.34 29.84 0.16 1.77 16 10 C 0.08 3.99 5.88 71.98 0.42 4.41 16 11 O -0.41 -18.67 10.33 -147.19 -1.52 -20.19 16 12 C 0.04 1.46 5.51 71.98 0.40 1.85 16 13 C 0.08 2.20 3.80 31.41 0.12 2.32 16 14 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.13 -2.33 6.13 31.71 0.19 -2.14 16 16 C -0.12 -2.03 2.76 -10.02 -0.03 -2.05 16 17 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 18 C -0.10 -1.26 5.58 30.50 0.17 -1.09 16 19 C -0.12 -1.32 5.84 30.68 0.18 -1.14 16 20 C -0.11 -1.55 5.83 30.72 0.18 -1.37 16 21 C -0.11 -2.32 5.97 30.26 0.18 -2.14 16 22 C 0.06 1.43 2.80 30.80 0.09 1.52 16 23 H 0.05 1.16 7.80 -2.39 -0.02 1.14 16 24 O -0.39 -13.31 11.03 -146.81 -1.62 -14.93 16 25 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.45 7.85 -2.39 -0.02 1.43 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.84 7.95 -2.39 -0.02 0.82 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.39 8.13 -2.38 -0.02 1.37 16 Total: -1.00 -73.09 325.43 2.89 -70.20 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.96 Total: 6.86 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 2.76 Total: -30.01 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.28 Total: -58.97 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -3.14 Total: -35.12 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.09 2.89 -70.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379227335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.919 kcal (2) G-P(sol) polarization free energy of solvation -73.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds