Wall clock time and date at job start Mon Mar 30 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 C 1.52996 * 109.87201 * 55.25558 * 3 2 1 5 5 H 1.09004 * 110.98729 * 295.10189 * 4 3 2 6 6 C 1.55304 * 111.12772 * 59.29396 * 4 3 2 7 7 C 1.54381 * 102.25221 * 152.05252 * 6 4 3 8 8 O 1.43236 * 107.59216 * 338.64908 * 7 6 4 9 9 C 1.43650 * 109.96955 * 358.28265 * 8 7 6 10 10 C 1.54104 * 109.88008 * 294.24569 * 3 2 1 11 11 C 1.54812 * 104.18650 * 242.60706 * 10 3 2 12 12 C 1.54995 * 102.09481 * 20.88176 * 11 10 3 13 13 C 1.53002 * 110.61747 * 81.47418 * 12 11 10 14 14 C 1.50699 * 110.61649 * 204.31940 * 12 11 10 15 15 H 1.07996 * 119.99986 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99614 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00209 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99716 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47032 * 120.00070 * 18 16 14 21 21 H 1.48494 * 109.47324 * 239.99779 * 18 16 14 22 22 O 1.43742 * 109.87781 * 176.26203 * 3 2 1 23 23 H 1.09007 * 109.46578 * 293.45028 * 1 2 3 24 24 H 1.08994 * 109.47367 * 53.44301 * 1 2 3 25 25 H 1.08998 * 109.47507 * 173.45265 * 1 2 3 26 26 H 1.09004 * 109.46591 * 240.00022 * 2 1 3 27 27 H 1.08994 * 109.47209 * 120.00130 * 2 1 3 28 28 H 1.08998 * 110.84797 * 270.24608 * 6 4 3 29 29 H 1.09000 * 110.84512 * 33.66039 * 6 4 3 30 30 H 1.09005 * 109.82621 * 98.16284 * 7 6 4 31 31 H 1.08997 * 109.83384 * 219.03909 * 7 6 4 32 32 H 1.08994 * 110.31044 * 265.51692 * 9 8 7 33 33 H 1.08999 * 110.30719 * 143.34561 * 9 8 7 34 34 H 1.08998 * 110.48908 * 1.28379 * 10 3 2 35 35 H 1.09000 * 110.48797 * 123.79452 * 10 3 2 36 36 H 1.09005 * 110.90315 * 139.08131 * 11 10 3 37 37 H 1.08994 * 110.90391 * 262.68207 * 11 10 3 38 38 H 1.08994 * 109.47013 * 75.40892 * 13 12 11 39 39 H 1.08999 * 109.46693 * 195.40129 * 13 12 11 40 40 H 1.08997 * 109.47374 * 315.40630 * 13 12 11 41 41 H 0.97005 * 120.00332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4402 2.2061 1.1823 5 1 0.3590 2.2985 1.0794 6 6 1.8187 1.5363 2.5314 7 6 1.7943 2.7311 3.5087 8 8 1.9468 3.9267 2.7347 9 6 2.1072 3.5951 1.3462 10 6 1.6536 2.1349 -1.3214 11 6 3.0114 2.4805 -1.9798 12 6 3.9766 1.4982 -1.2686 13 6 3.9079 0.1129 -1.9146 14 6 5.3877 2.0263 -1.2978 15 1 5.6007 2.9719 -1.7740 16 6 6.4071 1.3015 -0.7175 17 7 6.1479 0.1498 -0.1381 18 14 8.1564 1.9558 -0.7543 19 1 8.1815 3.2622 -1.4598 20 1 8.6472 2.1349 0.6358 21 1 9.0310 0.9906 -1.4675 22 8 3.4747 1.4536 0.0881 23 1 -0.3633 0.4090 0.9429 24 1 -0.3634 0.6121 -0.8254 25 1 -0.3634 -1.0209 -0.1172 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.0781 0.7884 2.8144 29 1 2.8136 1.0941 2.4792 30 1 0.8433 2.7540 4.0410 31 1 2.6145 2.6430 4.2211 32 1 3.1652 3.5392 1.0904 33 1 1.6043 4.3325 0.7206 34 1 1.0839 1.4558 -1.9556 35 1 1.0813 3.0413 -1.1240 36 1 2.9831 2.2898 -3.0527 37 1 3.2899 3.5146 -1.7772 38 1 4.4408 0.1286 -2.8653 39 1 4.3684 -0.6201 -1.2522 40 1 2.8659 -0.1566 -2.0865 41 1 6.8650 -0.3599 0.2705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380964637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:55 Heat of formation + Delta-G solvation = -100.354008 kcal Electronic energy + Delta-G solvation = -21107.614100 eV Core-core repulsion = 18180.210795 eV Total energy + Delta-G solvation = -2927.403305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91602 -37.95793 -34.25735 -32.31411 -31.31749 -30.59134 -29.47544 -27.90460 -25.73749 -24.57946 -22.57491 -21.88220 -21.14935 -19.43754 -18.41495 -16.64245 -16.15055 -15.64878 -14.91229 -14.57789 -14.22320 -13.98435 -13.70351 -13.46965 -13.03457 -12.68917 -12.47393 -12.03525 -11.95685 -11.72863 -11.32958 -11.14126 -10.98995 -10.87044 -10.78246 -10.67865 -10.54019 -10.35848 -10.23571 -10.15390 -9.96895 -9.56535 -9.28225 -9.05369 -8.88791 -8.52106 -8.03746 -5.99784 -4.14074 3.28742 3.37616 3.40939 4.31739 4.40769 4.79674 5.02322 5.20618 5.30118 5.39870 5.48085 5.51173 5.64728 5.69503 5.77390 5.79791 5.83713 5.89397 6.07245 6.12771 6.24982 6.26411 6.30421 6.38985 6.46270 6.55392 6.56394 6.69728 6.74726 6.81934 6.82525 6.89003 7.01176 7.24211 7.27523 7.42578 7.76769 8.07765 8.33937 8.60211 8.97821 9.56435 11.03185 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.008887 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.844434 B = 3150.015596 C = 3740.001266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.112 3.888 4 C -0.108 4.108 5 H 0.080 0.920 6 C -0.146 4.146 7 C 0.054 3.946 8 O -0.394 6.394 9 C 0.057 3.943 10 C -0.146 4.146 11 C -0.142 4.142 12 C 0.232 3.768 13 C -0.148 4.148 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.081 3.919 17 N -0.861 5.861 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 O -0.337 6.337 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.017 0.983 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 0.631 1.396 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.071 3.929 4 C -0.126 4.126 5 H 0.098 0.902 6 C -0.183 4.183 7 C -0.022 4.022 8 O -0.314 6.314 9 C -0.019 4.019 10 C -0.184 4.184 11 C -0.180 4.180 12 C 0.195 3.805 13 C -0.205 4.205 14 C -0.557 4.557 15 H 0.080 0.920 16 C -0.124 4.124 17 N -0.497 5.497 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 O -0.257 6.257 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.915 0.676 1.769 10.094 hybrid contribution 0.748 0.003 -0.229 0.782 sum -9.167 0.679 1.540 9.320 Atomic orbital electron populations 1.21849 0.96856 1.00800 1.01302 1.22237 0.94421 0.97765 1.03355 1.21600 0.86725 0.92587 0.92035 1.22918 0.99154 0.95401 0.95160 0.90199 1.23103 1.03786 0.97505 0.93918 1.23026 1.00083 0.84736 0.94374 1.88304 1.94421 1.29751 1.18884 1.23456 1.02258 0.94739 0.81426 1.22993 0.98610 0.99679 0.97100 1.23173 0.94419 1.01130 0.99274 1.20045 0.91840 0.90155 0.78444 1.22281 0.96822 1.00849 1.00575 1.20927 0.90042 1.06554 1.38141 0.91955 1.25003 0.98807 0.94567 0.94070 1.69986 1.31966 1.12615 1.35132 0.86608 0.84829 0.79129 0.77833 1.19684 1.20904 1.21015 1.89326 1.12549 1.93986 1.29829 0.93119 0.92913 0.93426 0.90537 0.91751 0.91111 0.88895 0.92398 0.92029 0.89615 0.90997 0.91884 0.92354 0.92378 0.91996 0.94395 0.89675 0.96409 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.14 37.16 0.34 -1.70 16 2 C -0.14 -2.39 4.54 -26.73 -0.12 -2.52 16 3 C 0.11 2.06 0.29 -90.05 -0.03 2.04 16 4 C -0.11 -1.79 1.63 -88.37 -0.14 -1.94 16 5 H 0.08 1.19 6.93 -51.93 -0.36 0.83 16 6 C -0.15 -2.36 5.41 -24.79 -0.13 -2.49 16 7 C 0.05 0.85 7.79 37.88 0.30 1.15 16 8 O -0.39 -7.23 11.36 -35.23 -0.40 -7.63 16 9 C 0.06 1.04 6.70 38.19 0.26 1.29 16 10 C -0.15 -2.53 4.93 -25.20 -0.12 -2.66 16 11 C -0.14 -2.88 6.03 -24.72 -0.15 -3.03 16 12 C 0.23 5.54 0.75 -90.72 -0.07 5.47 16 13 C -0.15 -3.43 7.47 37.16 0.28 -3.16 16 14 C -0.52 -13.95 8.32 -34.44 -0.29 -14.24 16 15 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 16 C 0.08 2.20 5.29 -17.82 -0.09 2.10 16 17 N -0.86 -24.02 11.21 55.43 0.62 -23.40 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 O -0.34 -7.97 8.34 -35.23 -0.29 -8.26 16 23 H 0.05 0.64 6.87 -51.92 -0.36 0.28 16 24 H 0.05 0.68 6.68 -51.93 -0.35 0.33 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.40 4.95 -51.93 -0.26 1.14 16 27 H 0.06 1.16 7.49 -51.93 -0.39 0.77 16 28 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.09 1.78 7.52 -51.93 -0.39 1.39 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.83 7.03 -51.93 -0.37 1.47 16 33 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 34 H 0.06 1.01 6.74 -51.93 -0.35 0.66 16 35 H 0.06 0.91 7.26 -51.93 -0.38 0.54 16 36 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 38 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 2.19 6.44 -51.93 -0.33 1.86 16 40 H 0.02 0.36 5.13 -51.93 -0.27 0.09 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -28.20 303.82 -7.19 -35.39 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.69 Total: 2.96 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 0.02 Total: -19.66 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.62 Total: -23.40 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.69 Total: -15.89 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.20 -7.19 -35.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380964637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.964 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds