Wall clock time and date at job start Mon Mar 30 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 C 1.52996 * 109.87201 * 55.25558 * 3 2 1 5 5 H 1.09004 * 110.98729 * 295.10189 * 4 3 2 6 6 C 1.55304 * 111.12772 * 59.29396 * 4 3 2 7 7 C 1.54381 * 102.25221 * 152.05252 * 6 4 3 8 8 O 1.43236 * 107.59216 * 338.64908 * 7 6 4 9 9 C 1.43650 * 109.96955 * 358.28265 * 8 7 6 10 10 C 1.54104 * 109.88008 * 294.24569 * 3 2 1 11 11 C 1.54812 * 104.18650 * 242.60706 * 10 3 2 12 12 C 1.54995 * 102.09481 * 20.88176 * 11 10 3 13 13 C 1.53002 * 110.61747 * 81.47418 * 12 11 10 14 14 C 1.50699 * 110.61649 * 204.31940 * 12 11 10 15 15 H 1.07996 * 119.99986 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99614 * 180.02562 * 14 12 11 17 17 N 1.31509 * 120.00209 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99716 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47032 * 120.00070 * 18 16 14 21 21 H 1.48494 * 109.47324 * 239.99779 * 18 16 14 22 22 O 1.43742 * 109.87781 * 176.26203 * 3 2 1 23 23 H 1.09007 * 109.46578 * 293.45028 * 1 2 3 24 24 H 1.08994 * 109.47367 * 53.44301 * 1 2 3 25 25 H 1.08998 * 109.47507 * 173.45265 * 1 2 3 26 26 H 1.09004 * 109.46591 * 240.00022 * 2 1 3 27 27 H 1.08994 * 109.47209 * 120.00130 * 2 1 3 28 28 H 1.08998 * 110.84797 * 270.24608 * 6 4 3 29 29 H 1.09000 * 110.84512 * 33.66039 * 6 4 3 30 30 H 1.09005 * 109.82621 * 98.16284 * 7 6 4 31 31 H 1.08997 * 109.83384 * 219.03909 * 7 6 4 32 32 H 1.08994 * 110.31044 * 265.51692 * 9 8 7 33 33 H 1.08999 * 110.30719 * 143.34561 * 9 8 7 34 34 H 1.08998 * 110.48908 * 1.28379 * 10 3 2 35 35 H 1.09000 * 110.48797 * 123.79452 * 10 3 2 36 36 H 1.09005 * 110.90315 * 139.08131 * 11 10 3 37 37 H 1.08994 * 110.90391 * 262.68207 * 11 10 3 38 38 H 1.08994 * 109.47013 * 75.40892 * 13 12 11 39 39 H 1.08999 * 109.46693 * 195.40129 * 13 12 11 40 40 H 1.08997 * 109.47374 * 315.40630 * 13 12 11 41 41 H 0.97005 * 120.00332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4402 2.2061 1.1823 5 1 0.3590 2.2985 1.0794 6 6 1.8187 1.5363 2.5314 7 6 1.7943 2.7311 3.5087 8 8 1.9468 3.9267 2.7347 9 6 2.1072 3.5951 1.3462 10 6 1.6536 2.1349 -1.3214 11 6 3.0114 2.4805 -1.9798 12 6 3.9766 1.4982 -1.2686 13 6 3.9079 0.1129 -1.9146 14 6 5.3877 2.0263 -1.2978 15 1 5.6007 2.9719 -1.7740 16 6 6.4071 1.3015 -0.7175 17 7 6.1479 0.1498 -0.1381 18 14 8.1564 1.9558 -0.7543 19 1 8.1815 3.2622 -1.4598 20 1 8.6472 2.1349 0.6358 21 1 9.0310 0.9906 -1.4675 22 8 3.4747 1.4536 0.0881 23 1 -0.3633 0.4090 0.9429 24 1 -0.3634 0.6121 -0.8254 25 1 -0.3634 -1.0209 -0.1172 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.0781 0.7884 2.8144 29 1 2.8136 1.0941 2.4792 30 1 0.8433 2.7540 4.0410 31 1 2.6145 2.6430 4.2211 32 1 3.1652 3.5392 1.0904 33 1 1.6043 4.3325 0.7206 34 1 1.0839 1.4558 -1.9556 35 1 1.0813 3.0413 -1.1240 36 1 2.9831 2.2898 -3.0527 37 1 3.2899 3.5146 -1.7772 38 1 4.4408 0.1286 -2.8653 39 1 4.3684 -0.6201 -1.2522 40 1 2.8659 -0.1566 -2.0865 41 1 6.8650 -0.3599 0.2705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380964637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:54 Heat of formation + Delta-G solvation = -117.023146 kcal Electronic energy + Delta-G solvation = -21108.336928 eV Core-core repulsion = 18180.210795 eV Total energy + Delta-G solvation = -2928.126133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38935 -39.43744 -35.86204 -34.15248 -32.87798 -31.99738 -30.98627 -29.45239 -27.54233 -26.20718 -23.98819 -23.23052 -22.55372 -21.18484 -19.86293 -18.51645 -17.46732 -17.23975 -16.58985 -16.20246 -15.78419 -15.43786 -15.16393 -14.98334 -14.51966 -14.23920 -13.95579 -13.67037 -13.44337 -13.15152 -12.85565 -12.80969 -12.49182 -12.43060 -12.34313 -12.27554 -12.14254 -11.99048 -11.88231 -11.61938 -11.52733 -11.05740 -10.87372 -10.71666 -10.49843 -10.43624 -9.74033 -8.05219 -6.25379 1.37389 1.40867 1.50476 2.41942 2.98427 3.09885 3.50530 3.72154 3.89738 4.02425 4.11917 4.18271 4.31277 4.36536 4.47110 4.48891 4.52789 4.60168 4.75120 4.81558 4.86058 4.91809 4.95211 5.03456 5.05389 5.09066 5.10115 5.15079 5.24456 5.31983 5.33097 5.47058 5.49534 5.52786 5.66600 5.74179 6.07964 6.15373 6.38264 6.70278 7.12660 7.48232 8.96139 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.008887 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.844434 B = 3150.015596 C = 3740.001266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.102 3.898 4 C -0.100 4.100 5 H 0.113 0.887 6 C -0.141 4.141 7 C 0.050 3.950 8 O -0.409 6.409 9 C 0.059 3.941 10 C -0.136 4.136 11 C -0.140 4.140 12 C 0.220 3.780 13 C -0.135 4.135 14 C -0.540 4.540 15 H 0.053 0.947 16 C 0.035 3.965 17 N -0.887 5.887 18 Si 0.944 3.056 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.277 1.277 22 O -0.369 6.369 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 1.035 1.379 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.062 3.938 4 C -0.119 4.119 5 H 0.131 0.869 6 C -0.179 4.179 7 C -0.026 4.026 8 O -0.330 6.330 9 C -0.017 4.017 10 C -0.174 4.174 11 C -0.178 4.178 12 C 0.182 3.818 13 C -0.192 4.192 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.524 5.524 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.203 1.203 22 O -0.289 6.289 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.407 1.083 1.746 12.576 hybrid contribution 1.520 -0.118 -0.188 1.536 sum -10.887 0.965 1.558 11.041 Atomic orbital electron populations 1.21797 0.93418 1.02228 1.02579 1.22148 0.97298 0.96246 1.01700 1.21891 0.84330 0.94004 0.93591 1.22941 1.00521 0.93968 0.94446 0.86883 1.23027 1.02366 0.98254 0.94225 1.23219 1.01812 0.83553 0.94026 1.88285 1.94453 1.31159 1.19062 1.23333 1.00079 0.96441 0.81839 1.22975 0.97185 1.00993 0.96221 1.23071 0.95382 0.99595 0.99715 1.20054 0.91430 0.90943 0.79354 1.22111 0.97999 1.00017 0.99106 1.21316 0.92405 1.06181 1.37833 0.92884 1.25669 1.02146 0.94878 0.94041 1.70116 1.32663 1.13538 1.36062 0.85742 0.80976 0.78781 0.77513 1.19241 1.21224 1.20279 1.89254 1.15955 1.94316 1.29422 0.91721 0.91667 0.92052 0.92222 0.93471 0.88273 0.92922 0.88956 0.92356 0.93987 0.89095 0.89931 0.90018 0.91412 0.92955 0.95384 0.92771 0.93710 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.14 71.98 0.66 -2.61 16 2 C -0.14 -4.41 4.54 30.59 0.14 -4.27 16 3 C 0.10 3.63 0.29 -10.42 0.00 3.63 16 4 C -0.10 -3.10 1.63 -9.34 -0.02 -3.12 16 5 H 0.11 2.81 6.93 -2.39 -0.02 2.80 16 6 C -0.14 -4.36 5.41 31.85 0.17 -4.18 16 7 C 0.05 1.47 7.79 72.45 0.56 2.03 16 8 O -0.41 -14.46 11.36 -148.98 -1.69 -16.15 16 9 C 0.06 2.08 6.70 72.65 0.49 2.57 16 10 C -0.14 -4.35 4.93 31.59 0.16 -4.20 16 11 C -0.14 -5.55 6.03 31.90 0.19 -5.35 16 12 C 0.22 10.64 0.75 -10.86 -0.01 10.63 16 13 C -0.13 -6.36 7.47 71.98 0.54 -5.82 16 14 C -0.54 -29.86 8.32 25.60 0.21 -29.65 16 15 H 0.05 2.93 7.77 -2.91 -0.02 2.90 16 16 C 0.04 1.96 5.29 84.66 0.45 2.41 16 17 N -0.89 -51.27 11.21 21.45 0.24 -51.03 16 18 Si 0.94 44.31 29.54 68.60 2.03 46.34 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 O -0.37 -17.78 8.34 -148.98 -1.24 -19.03 16 23 H 0.06 1.31 6.87 -2.38 -0.02 1.30 16 24 H 0.06 1.35 6.68 -2.39 -0.02 1.33 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 2.11 4.95 -2.39 -0.01 2.09 16 27 H 0.05 1.66 7.49 -2.39 -0.02 1.65 16 28 H 0.10 2.46 8.11 -2.39 -0.02 2.44 16 29 H 0.05 2.05 7.52 -2.39 -0.02 2.04 16 30 H 0.09 2.11 8.14 -2.38 -0.02 2.10 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.84 7.03 -2.39 -0.02 1.83 16 33 H 0.09 2.80 7.91 -2.39 -0.02 2.78 16 34 H 0.08 2.33 6.74 -2.39 -0.02 2.31 16 35 H 0.08 2.24 7.26 -2.39 -0.02 2.22 16 36 H 0.07 2.50 8.05 -2.38 -0.02 2.48 16 37 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 38 H 0.03 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.05 2.88 6.44 -2.39 -0.02 2.86 16 40 H 0.04 1.81 5.13 -2.39 -0.01 1.80 16 41 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -63.14 303.82 3.87 -59.27 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.00 Total: 18.53 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 3.54 Total: -37.93 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.24 Total: -51.03 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -2.93 Total: -35.18 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.14 3.87 -59.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380964637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.757 kcal (2) G-P(sol) polarization free energy of solvation -63.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds