Wall clock time and date at job start Mon Mar 30 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.53071 * 2 1 4 4 C 1.55218 * 110.59629 * 237.01185 * 2 1 3 5 5 C 1.53798 * 101.83630 * 277.67451 * 4 2 1 6 6 C 1.53923 * 110.56569 * 99.53402 * 5 4 2 7 7 C 1.55484 * 100.79609 * 86.30715 * 6 5 4 8 8 C 1.54476 * 102.36022 * 33.05813 * 7 6 5 9 9 H 1.08993 * 109.83370 * 98.15272 * 8 7 6 10 10 C 1.50700 * 109.83660 * 219.15233 * 8 7 6 11 11 H 1.07992 * 119.99969 * 359.55173 * 10 8 7 12 12 C 1.37878 * 119.99365 * 179.55080 * 10 8 7 13 13 N 1.31508 * 120.00467 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 119.99735 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46949 * 59.99896 * 14 12 10 16 16 H 1.48487 * 109.47371 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47084 * 300.00510 * 14 12 10 18 18 O 1.42427 * 111.57396 * 217.91577 * 5 4 2 19 19 C 1.53080 * 105.21172 * 339.63629 * 5 4 2 20 20 C 1.53001 * 109.97301 * 117.19520 * 19 5 4 21 21 C 1.53007 * 109.96881 * 238.42510 * 19 5 4 22 22 O 1.44040 * 106.91516 * 357.82637 * 19 5 4 23 23 H 1.09000 * 109.47326 * 288.25092 * 1 2 3 24 24 H 1.08999 * 109.47214 * 48.24840 * 1 2 3 25 25 H 1.09006 * 109.47464 * 168.25271 * 1 2 3 26 26 H 1.09006 * 109.47248 * 181.36519 * 3 2 1 27 27 H 1.09006 * 109.47027 * 301.35473 * 3 2 1 28 28 H 1.08998 * 109.47389 * 61.36288 * 3 2 1 29 29 H 1.08997 * 110.95924 * 159.53672 * 4 2 1 30 30 H 1.09004 * 110.94961 * 35.80957 * 4 2 1 31 31 H 1.09000 * 111.14963 * 204.18718 * 6 5 4 32 32 H 1.09000 * 111.15596 * 328.37265 * 6 5 4 33 33 H 1.08995 * 110.83188 * 151.28160 * 7 6 5 34 34 H 1.09008 * 110.82380 * 274.64683 * 7 6 5 35 35 H 0.97005 * 119.99939 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.47222 * 67.30924 * 20 19 5 37 37 H 1.08997 * 109.46900 * 187.31279 * 20 19 5 38 38 H 1.08996 * 109.46760 * 307.30984 * 20 19 5 39 39 H 1.09000 * 109.46577 * 60.00006 * 21 19 5 40 40 H 1.08998 * 109.46673 * 180.02562 * 21 19 5 41 41 H 1.08999 * 109.46785 * 300.00038 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0665 1.4328 0.0000 4 6 2.0760 -0.7911 -1.2187 5 6 1.9988 -2.2417 -0.7135 6 6 0.7415 -2.9393 -1.2627 7 6 1.2689 -3.4549 -2.6315 8 6 2.7498 -3.7650 -2.3196 9 1 2.8711 -4.8302 -2.1229 10 6 3.6141 -3.3565 -3.4846 11 1 3.1634 -2.9258 -4.3664 12 6 4.9803 -3.5327 -3.4244 13 7 5.5291 -4.0567 -2.3503 14 14 6.0517 -3.0270 -4.8687 15 1 5.8882 -1.5728 -5.1210 16 1 7.4737 -3.3189 -4.5563 17 1 5.6446 -3.7879 -6.0773 18 8 3.1141 -3.0099 -1.1545 19 6 1.9432 -2.1331 0.8124 20 6 0.6194 -2.7006 1.3288 21 6 3.1157 -2.8949 1.4336 22 8 2.0381 -0.7329 1.1367 23 1 -0.3634 0.3218 0.9760 24 1 -0.3633 0.6843 -0.7667 25 1 -0.3634 -1.0062 -0.2092 26 1 3.1561 1.4127 -0.0245 27 1 1.6931 1.9606 -0.8776 28 1 1.7327 1.9458 0.9019 29 1 3.1058 -0.5087 -1.4372 30 1 1.4403 -0.6483 -2.0926 31 1 0.4387 -3.7667 -0.6210 32 1 -0.0751 -2.2299 -1.3970 33 1 0.7396 -4.3579 -2.9357 34 1 1.1842 -2.6820 -3.3955 35 1 6.4902 -4.1810 -2.3082 36 1 0.5928 -3.7763 1.1552 37 1 0.5314 -2.5027 2.3971 38 1 -0.2090 -2.2269 0.8021 39 1 4.0543 -2.4702 1.0775 40 1 3.0679 -2.8127 2.5194 41 1 3.0598 -3.9449 1.1462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381276856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:45 Heat of formation + Delta-G solvation = -109.984551 kcal Electronic energy + Delta-G solvation = -21215.746837 eV Core-core repulsion = 18287.925921 eV Total energy + Delta-G solvation = -2927.820916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06042 -38.84091 -35.17156 -34.59618 -33.35463 -32.36877 -30.39167 -29.00012 -28.17395 -27.49825 -25.23282 -23.03596 -21.99855 -21.25211 -20.08163 -18.55958 -17.40588 -17.11920 -16.53734 -16.12632 -15.57883 -15.27905 -15.14156 -14.60525 -14.35366 -14.09608 -13.84643 -13.69294 -13.45536 -13.25021 -12.97471 -12.92662 -12.80939 -12.76205 -12.66658 -12.41605 -12.34496 -12.13746 -11.95013 -11.73656 -11.45660 -11.20564 -11.09090 -11.00059 -10.65323 -10.56723 -9.68192 -8.11223 -6.31463 1.37405 1.39392 1.46781 2.39845 2.82818 3.04284 3.43704 3.68072 3.79211 3.92440 4.00078 4.05740 4.17882 4.29423 4.34071 4.54047 4.57144 4.62830 4.67449 4.75650 4.81179 4.83185 4.87951 4.89768 4.92477 5.00440 5.03196 5.08755 5.16650 5.23413 5.29922 5.35688 5.39089 5.45303 5.50755 5.65582 5.78548 6.17106 6.22266 6.64232 7.12158 7.45109 8.94906 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.007885 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.527579 B = 3550.011853 C = 3740.943106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 C -0.135 4.135 4 C -0.148 4.148 5 C 0.073 3.927 6 C -0.138 4.138 7 C -0.138 4.138 8 C 0.199 3.801 9 H 0.000 1.000 10 C -0.558 4.558 11 H 0.059 0.941 12 C 0.025 3.975 13 N -0.899 5.899 14 Si 0.951 3.049 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.264 1.264 18 O -0.365 6.365 19 C 0.104 3.896 20 C -0.159 4.159 21 C -0.118 4.118 22 O -0.380 6.380 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.258 0.742 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 6.731 5.070 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.192 4.192 4 C -0.186 4.186 5 C 0.032 3.968 6 C -0.175 4.175 7 C -0.176 4.176 8 C 0.143 3.857 9 H 0.018 0.982 10 C -0.595 4.595 11 H 0.077 0.923 12 C -0.177 4.177 13 N -0.537 5.537 14 Si 0.776 3.224 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.189 1.189 18 O -0.284 6.284 19 C 0.064 3.936 20 C -0.216 4.216 21 C -0.175 4.175 22 O -0.301 6.301 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.041 6.747 5.440 14.836 hybrid contribution 1.212 -0.128 -1.100 1.641 sum -10.829 6.619 4.340 13.413 Atomic orbital electron populations 1.22496 0.92653 1.03639 1.03647 1.22644 0.94939 0.92824 0.84165 1.21755 1.00692 0.93213 1.03542 1.23347 1.00804 0.95713 0.98752 1.22801 0.88430 0.92135 0.93450 1.23432 0.96898 1.01003 0.96156 1.23137 0.95738 1.01146 0.97529 1.20232 0.91287 0.90275 0.83875 0.98185 1.21723 0.92911 1.43425 1.01479 0.92311 1.25862 0.99725 0.94173 0.97915 1.70165 1.11049 1.43463 1.29034 0.85746 0.77657 0.78940 0.80058 1.19787 1.21096 1.18902 1.88634 1.33791 1.60028 1.45995 1.21995 0.96602 0.82242 0.92745 1.22508 0.95569 1.01396 1.02125 1.21484 0.96900 0.99490 0.99647 1.88919 1.84939 1.16819 1.39386 0.90804 0.89839 0.90924 0.93876 0.89392 0.90719 0.93697 0.89727 0.89256 0.88013 0.90593 0.91759 0.93267 0.91041 0.91178 0.89766 0.95172 0.91561 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 8.03 71.98 0.58 -3.14 16 2 C 0.09 2.80 1.25 -10.04 -0.01 2.79 16 3 C -0.13 -3.53 8.99 71.98 0.65 -2.88 16 4 C -0.15 -5.53 5.25 31.62 0.17 -5.36 16 5 C 0.07 2.87 0.93 -10.19 -0.01 2.86 16 6 C -0.14 -4.48 4.23 31.76 0.13 -4.35 16 7 C -0.14 -5.41 6.39 31.95 0.20 -5.20 16 8 C 0.20 10.32 3.38 30.35 0.10 10.42 16 9 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 10 C -0.56 -31.59 8.75 25.60 0.22 -31.37 16 11 H 0.06 3.21 7.52 -2.91 -0.02 3.18 16 12 C 0.03 1.46 5.41 84.66 0.46 1.92 16 13 N -0.90 -55.39 12.91 21.45 0.28 -55.12 16 14 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 18 O -0.37 -18.97 8.25 -148.98 -1.23 -20.20 16 19 C 0.10 3.67 1.15 -10.76 -0.01 3.66 16 20 C -0.16 -4.26 7.23 71.98 0.52 -3.74 16 21 C -0.12 -4.63 7.97 71.98 0.57 -4.06 16 22 O -0.38 -13.53 10.38 -148.98 -1.55 -15.08 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 25 H 0.07 1.58 2.94 -2.38 -0.01 1.57 16 26 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 30 H 0.08 2.87 7.65 -2.39 -0.02 2.86 16 31 H 0.09 2.65 5.89 -2.39 -0.01 2.64 16 32 H 0.10 2.64 5.82 -2.39 -0.01 2.63 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 2.50 7.67 -2.38 -0.02 2.48 16 35 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 36 H 0.07 1.84 6.89 -2.39 -0.02 1.83 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.93 4.37 -2.39 -0.01 1.92 16 39 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.42 7.92 -2.39 -0.02 2.40 16 Total: -1.00 -68.06 305.53 4.10 -63.96 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.00 Total: 17.94 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.57 Total: -38.46 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.28 Total: -55.12 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.78 Total: -35.28 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.06 4.10 -63.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381276856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.021 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds