Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 110.52658 * 2 1 4 4 C 1.55212 * 110.59460 * 122.81468 * 2 1 3 5 5 C 1.53806 * 101.83436 * 82.33451 * 4 2 1 6 6 C 1.53910 * 110.57568 * 260.42621 * 5 4 2 7 7 C 1.55501 * 100.79294 * 273.70361 * 6 5 4 8 8 C 1.54476 * 102.35588 * 326.93584 * 7 6 5 9 9 H 1.08999 * 109.83363 * 261.85018 * 8 7 6 10 10 C 1.50692 * 109.83604 * 140.85710 * 8 7 6 11 11 H 1.08001 * 119.99901 * 359.97438 * 10 8 7 12 12 C 1.37874 * 120.00155 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99744 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00248 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46995 * 89.99862 * 14 12 10 16 16 H 1.48493 * 109.47127 * 209.99850 * 14 12 10 17 17 H 1.48501 * 109.47158 * 329.99896 * 14 12 10 18 18 O 1.42427 * 111.56231 * 142.04158 * 5 4 2 19 19 C 1.53072 * 105.21160 * 20.34424 * 5 4 2 20 20 C 1.53001 * 109.97250 * 121.56537 * 19 5 4 21 21 C 1.53008 * 109.96742 * 242.83287 * 19 5 4 22 22 O 1.44037 * 106.91737 * 2.19658 * 19 5 4 23 23 H 1.09002 * 109.46557 * 308.60013 * 1 2 3 24 24 H 1.08997 * 109.47329 * 68.60055 * 1 2 3 25 25 H 1.08999 * 109.46840 * 188.60031 * 1 2 3 26 26 H 1.09008 * 109.46548 * 182.81756 * 3 2 1 27 27 H 1.08998 * 109.46964 * 302.81507 * 3 2 1 28 28 H 1.08994 * 109.47006 * 62.82148 * 3 2 1 29 29 H 1.08999 * 110.95812 * 324.20112 * 4 2 1 30 30 H 1.09002 * 110.99182 * 200.48585 * 4 2 1 31 31 H 1.08997 * 111.15550 * 155.81956 * 6 5 4 32 32 H 1.09002 * 111.18794 * 31.59425 * 6 5 4 33 33 H 1.09001 * 110.83036 * 85.15354 * 7 6 5 34 34 H 1.08997 * 110.82437 * 208.72056 * 7 6 5 35 35 H 0.97001 * 119.99602 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47063 * 59.99665 * 20 19 5 37 37 H 1.09003 * 109.46756 * 179.97438 * 20 19 5 38 38 H 1.08999 * 109.47113 * 299.99812 * 20 19 5 39 39 H 1.08996 * 109.46878 * 52.37660 * 21 19 5 40 40 H 1.08998 * 109.46780 * 172.37302 * 21 19 5 41 41 H 1.08999 * 109.47137 * 292.37145 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 2.0760 -0.7874 1.2211 5 6 1.9990 -2.2395 0.7201 6 6 0.7424 -2.9362 1.2719 7 6 1.2709 -3.4474 2.6421 8 6 2.7517 -3.7577 2.3303 9 1 2.8734 -4.8234 2.1366 10 6 3.6164 -3.3456 3.4936 11 1 3.1667 -2.9055 4.3714 12 6 4.9817 -3.5293 3.4369 13 7 5.5293 -4.0638 2.3673 14 14 6.0537 -3.0177 4.8786 15 1 6.1896 -4.1558 5.8227 16 1 7.3964 -2.6236 4.3817 17 1 5.4271 -1.8669 5.5775 18 8 3.1150 -3.0058 1.1628 19 6 1.9430 -2.1354 -0.8061 20 6 3.1157 -2.8986 -1.4253 21 6 0.6189 -2.7041 -1.3203 22 8 2.0382 -0.7362 -1.1345 23 1 -0.3632 0.6412 0.8032 24 1 -0.3634 0.3749 -0.9568 25 1 -0.3633 -1.0161 0.1537 26 1 3.1553 1.4132 -0.0505 27 1 1.6724 1.9684 -0.8637 28 1 1.7544 1.9377 0.9142 29 1 1.4404 -0.6421 2.0945 30 1 3.1058 -0.5044 1.4395 31 1 0.4397 -3.7656 0.6327 32 1 -0.0746 -2.2271 1.4053 33 1 1.1894 -2.6713 3.4030 34 1 0.7421 -4.3498 2.9491 35 1 6.4898 -4.1934 2.3276 36 1 3.0603 -3.9477 -1.1349 37 1 3.0676 -2.8195 -2.5114 38 1 4.0542 -2.4725 -1.0708 39 1 -0.2090 -2.2327 -0.7909 40 1 0.5281 -2.5044 -2.3880 41 1 0.5945 -3.7802 -1.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381276865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -91.285458 kcal Electronic energy + Delta-G solvation = -21212.773297 eV Core-core repulsion = 18285.763234 eV Total energy + Delta-G solvation = -2927.010063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60406 -37.21078 -33.78109 -32.66462 -31.73916 -30.75344 -28.89491 -27.67575 -26.59685 -26.08676 -23.48096 -21.53558 -20.25333 -19.89434 -18.57770 -16.51753 -15.92243 -15.67184 -14.73759 -14.51717 -14.09281 -13.88026 -13.51889 -13.12495 -12.81171 -12.72408 -12.47911 -12.17641 -11.93978 -11.87618 -11.69147 -11.49046 -11.31954 -11.18505 -10.91089 -10.86601 -10.62397 -10.51499 -10.40125 -10.12295 -10.06102 -9.63998 -9.61249 -9.23966 -9.13739 -8.50947 -7.81814 -5.97363 -4.10655 3.30325 3.37819 3.40194 4.15572 4.43611 4.77762 5.06040 5.12631 5.22863 5.28055 5.36099 5.44030 5.55407 5.62519 5.70613 5.76324 5.82028 5.92532 5.95876 6.01177 6.05830 6.15338 6.20969 6.31286 6.33810 6.37951 6.43719 6.52854 6.60222 6.63966 6.67837 6.71478 6.80395 6.90450 7.07483 7.52684 7.65631 7.89755 8.29548 8.63097 9.05991 9.60619 11.09081 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.007879 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.978701 B = 3553.041204 C = 3744.571713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 C -0.135 4.135 4 C -0.147 4.147 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.145 4.145 8 C 0.205 3.795 9 H 0.038 0.962 10 C -0.542 4.542 11 H 0.057 0.943 12 C 0.080 3.920 13 N -0.861 5.861 14 Si 0.886 3.114 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.333 6.333 19 C 0.105 3.895 20 C -0.122 4.122 21 C -0.166 4.166 22 O -0.363 6.363 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 5.465 -5.119 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.054 3.946 3 C -0.192 4.192 4 C -0.185 4.185 5 C 0.049 3.951 6 C -0.190 4.190 7 C -0.183 4.183 8 C 0.150 3.850 9 H 0.055 0.945 10 C -0.579 4.579 11 H 0.076 0.924 12 C -0.126 4.126 13 N -0.497 5.497 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 O -0.251 6.251 19 C 0.065 3.935 20 C -0.179 4.179 21 C -0.223 4.223 22 O -0.283 6.283 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.391 5.479 -5.496 12.182 hybrid contribution 0.364 0.236 1.137 1.217 sum -9.026 5.715 -4.359 11.538 Atomic orbital electron populations 1.22551 0.95714 1.02942 1.01877 1.22419 0.92738 0.92747 0.86658 1.21711 1.01964 0.93938 1.01608 1.23394 1.02787 0.95560 0.96765 1.22410 0.88676 0.92068 0.91970 1.23430 0.97351 1.00156 0.98082 1.23271 0.98969 1.00210 0.95851 1.20370 0.88240 0.92193 0.84165 0.94473 1.21327 0.92239 1.43573 1.00797 0.92447 1.25030 0.98165 0.94058 0.95319 1.70026 1.11055 1.41635 1.27025 0.86713 0.80091 0.78973 0.82846 1.20628 1.21145 1.19889 1.88703 1.30943 1.59569 1.45934 1.21955 0.95397 0.82055 0.94048 1.21558 0.97878 1.00284 0.98194 1.22580 0.97429 1.01187 1.01133 1.88942 1.84117 1.16688 1.38524 0.92053 0.92268 0.90971 0.91741 0.92499 0.91551 0.90865 0.89548 0.90755 0.91400 0.91729 0.92357 0.93031 0.91046 0.93873 0.91202 0.91634 0.92565 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.09 37.16 0.30 -2.02 16 2 C 0.09 1.51 1.25 -89.44 -0.11 1.39 16 3 C -0.13 -1.89 9.00 37.16 0.33 -1.55 16 4 C -0.15 -2.77 5.24 -25.14 -0.13 -2.91 16 5 C 0.09 1.80 0.93 -89.69 -0.08 1.72 16 6 C -0.15 -2.68 4.22 -24.93 -0.11 -2.78 16 7 C -0.15 -2.93 6.39 -24.63 -0.16 -3.09 16 8 C 0.21 5.17 3.37 -27.11 -0.09 5.08 16 9 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.54 -14.95 8.75 -34.45 -0.30 -15.25 16 11 H 0.06 1.55 7.52 -52.49 -0.39 1.16 16 12 C 0.08 2.25 5.41 -17.82 -0.10 2.16 16 13 N -0.86 -25.38 12.93 55.43 0.72 -24.66 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 O -0.33 -8.31 8.27 -35.23 -0.29 -8.60 16 19 C 0.10 1.91 1.15 -90.58 -0.10 1.81 16 20 C -0.12 -2.34 7.97 37.16 0.30 -2.04 16 21 C -0.17 -2.49 7.23 37.16 0.27 -2.22 16 22 O -0.36 -6.69 10.38 -35.23 -0.37 -7.05 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.97 2.87 -51.93 -0.15 0.82 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.30 7.65 -51.93 -0.40 0.90 16 30 H 0.09 1.85 8.03 -51.93 -0.42 1.44 16 31 H 0.07 1.22 5.90 -51.93 -0.31 0.91 16 32 H 0.07 1.04 5.91 -51.93 -0.31 0.73 16 33 H 0.06 1.31 7.65 -51.93 -0.40 0.91 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.52 7.92 -51.93 -0.41 1.10 16 39 H 0.06 0.90 4.30 -51.93 -0.22 0.68 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.95 6.91 -51.93 -0.36 0.59 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -29.94 305.61 -7.05 -36.99 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.71 Total: 2.04 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 0.02 Total: -19.70 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.72 Total: -24.66 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.66 Total: -15.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.94 -7.05 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381276865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.298 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds