Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 110.52658 * 2 1 4 4 C 1.55212 * 110.59460 * 122.81468 * 2 1 3 5 5 C 1.53806 * 101.83436 * 82.33451 * 4 2 1 6 6 C 1.53910 * 110.57568 * 260.42621 * 5 4 2 7 7 C 1.55501 * 100.79294 * 273.70361 * 6 5 4 8 8 C 1.54476 * 102.35588 * 326.93584 * 7 6 5 9 9 H 1.08999 * 109.83363 * 261.85018 * 8 7 6 10 10 C 1.50692 * 109.83604 * 140.85710 * 8 7 6 11 11 H 1.08001 * 119.99901 * 359.97438 * 10 8 7 12 12 C 1.37874 * 120.00155 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99744 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 120.00248 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46995 * 89.99862 * 14 12 10 16 16 H 1.48493 * 109.47127 * 209.99850 * 14 12 10 17 17 H 1.48501 * 109.47158 * 329.99896 * 14 12 10 18 18 O 1.42427 * 111.56231 * 142.04158 * 5 4 2 19 19 C 1.53072 * 105.21160 * 20.34424 * 5 4 2 20 20 C 1.53001 * 109.97250 * 121.56537 * 19 5 4 21 21 C 1.53008 * 109.96742 * 242.83287 * 19 5 4 22 22 O 1.44037 * 106.91737 * 2.19658 * 19 5 4 23 23 H 1.09002 * 109.46557 * 308.60013 * 1 2 3 24 24 H 1.08997 * 109.47329 * 68.60055 * 1 2 3 25 25 H 1.08999 * 109.46840 * 188.60031 * 1 2 3 26 26 H 1.09008 * 109.46548 * 182.81756 * 3 2 1 27 27 H 1.08998 * 109.46964 * 302.81507 * 3 2 1 28 28 H 1.08994 * 109.47006 * 62.82148 * 3 2 1 29 29 H 1.08999 * 110.95812 * 324.20112 * 4 2 1 30 30 H 1.09002 * 110.99182 * 200.48585 * 4 2 1 31 31 H 1.08997 * 111.15550 * 155.81956 * 6 5 4 32 32 H 1.09002 * 111.18794 * 31.59425 * 6 5 4 33 33 H 1.09001 * 110.83036 * 85.15354 * 7 6 5 34 34 H 1.08997 * 110.82437 * 208.72056 * 7 6 5 35 35 H 0.97001 * 119.99602 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.47063 * 59.99665 * 20 19 5 37 37 H 1.09003 * 109.46756 * 179.97438 * 20 19 5 38 38 H 1.08999 * 109.47113 * 299.99812 * 20 19 5 39 39 H 1.08996 * 109.46878 * 52.37660 * 21 19 5 40 40 H 1.08998 * 109.46780 * 172.37302 * 21 19 5 41 41 H 1.08999 * 109.47137 * 292.37145 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 2.0760 -0.7874 1.2211 5 6 1.9990 -2.2395 0.7201 6 6 0.7424 -2.9362 1.2719 7 6 1.2709 -3.4474 2.6421 8 6 2.7517 -3.7577 2.3303 9 1 2.8734 -4.8234 2.1366 10 6 3.6164 -3.3456 3.4936 11 1 3.1667 -2.9055 4.3714 12 6 4.9817 -3.5293 3.4369 13 7 5.5293 -4.0638 2.3673 14 14 6.0537 -3.0177 4.8786 15 1 6.1896 -4.1558 5.8227 16 1 7.3964 -2.6236 4.3817 17 1 5.4271 -1.8669 5.5775 18 8 3.1150 -3.0058 1.1628 19 6 1.9430 -2.1354 -0.8061 20 6 3.1157 -2.8986 -1.4253 21 6 0.6189 -2.7041 -1.3203 22 8 2.0382 -0.7362 -1.1345 23 1 -0.3632 0.6412 0.8032 24 1 -0.3634 0.3749 -0.9568 25 1 -0.3633 -1.0161 0.1537 26 1 3.1553 1.4132 -0.0505 27 1 1.6724 1.9684 -0.8637 28 1 1.7544 1.9377 0.9142 29 1 1.4404 -0.6421 2.0945 30 1 3.1058 -0.5044 1.4395 31 1 0.4397 -3.7656 0.6327 32 1 -0.0746 -2.2271 1.4053 33 1 1.1894 -2.6713 3.4030 34 1 0.7421 -4.3498 2.9491 35 1 6.4898 -4.1934 2.3276 36 1 3.0603 -3.9477 -1.1349 37 1 3.0676 -2.8195 -2.5114 38 1 4.0542 -2.4725 -1.0708 39 1 -0.2090 -2.2327 -0.7909 40 1 0.5281 -2.5044 -2.3880 41 1 0.5945 -3.7802 -1.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381276865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -109.772661 kcal Electronic energy + Delta-G solvation = -21213.574962 eV Core-core repulsion = 18285.763234 eV Total energy + Delta-G solvation = -2927.811728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.06211 -38.84278 -35.17011 -34.59738 -33.35563 -32.37039 -30.39286 -29.01178 -28.17434 -27.49092 -25.23284 -23.03614 -21.99775 -21.24915 -20.08285 -18.56375 -17.41020 -17.12441 -16.53790 -16.12548 -15.57842 -15.27473 -15.15137 -14.61821 -14.34419 -14.10185 -13.83317 -13.69361 -13.45597 -13.25971 -12.96730 -12.94269 -12.83193 -12.76189 -12.65755 -12.41115 -12.33453 -12.13971 -11.94336 -11.72005 -11.45760 -11.21158 -11.08376 -11.00000 -10.66091 -10.56658 -9.68113 -8.11681 -6.31764 1.36895 1.38291 1.48070 2.39607 2.82558 3.04002 3.43732 3.68203 3.79318 3.92644 4.00336 4.05972 4.17441 4.29410 4.33896 4.53640 4.57337 4.63467 4.67748 4.75652 4.80960 4.83346 4.87991 4.89196 4.92539 5.00204 5.02570 5.08696 5.16678 5.23849 5.30079 5.35697 5.38975 5.45121 5.51771 5.65516 5.78581 6.17100 6.22202 6.64413 7.12049 7.44865 8.94685 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.007879 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.978701 B = 3553.041204 C = 3744.571713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 C -0.135 4.135 4 C -0.148 4.148 5 C 0.073 3.927 6 C -0.138 4.138 7 C -0.138 4.138 8 C 0.199 3.801 9 H 0.000 1.000 10 C -0.556 4.556 11 H 0.059 0.941 12 C 0.025 3.975 13 N -0.900 5.900 14 Si 0.952 3.048 15 H -0.270 1.270 16 H -0.287 1.287 17 H -0.266 1.266 18 O -0.366 6.366 19 C 0.104 3.896 20 C -0.118 4.118 21 C -0.160 4.160 22 O -0.380 6.380 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 6.737 -5.084 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.054 3.946 3 C -0.192 4.192 4 C -0.186 4.186 5 C 0.032 3.968 6 C -0.175 4.175 7 C -0.176 4.176 8 C 0.143 3.857 9 H 0.018 0.982 10 C -0.594 4.594 11 H 0.077 0.923 12 C -0.177 4.177 13 N -0.538 5.538 14 Si 0.777 3.223 15 H -0.195 1.195 16 H -0.213 1.213 17 H -0.191 1.191 18 O -0.285 6.285 19 C 0.064 3.936 20 C -0.175 4.175 21 C -0.217 4.217 22 O -0.300 6.300 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.057 6.758 -5.453 14.858 hybrid contribution 1.222 -0.140 1.095 1.646 sum -10.835 6.618 -4.358 13.424 Atomic orbital electron populations 1.22506 0.92668 1.03671 1.03643 1.22642 0.94931 0.92813 0.84193 1.21753 1.00726 0.93190 1.03531 1.23349 1.00839 0.95701 0.98745 1.22799 0.88416 0.92156 0.93448 1.23422 0.96902 1.01020 0.96121 1.23144 0.95733 1.01145 0.97533 1.20237 0.91313 0.90321 0.83834 0.98178 1.21748 0.92980 1.42921 1.01742 0.92326 1.25868 0.99741 0.94208 0.97902 1.70175 1.11098 1.43329 1.29166 0.85680 0.77978 0.78985 0.79699 1.19494 1.21291 1.19060 1.88632 1.33801 1.60265 1.45800 1.21995 0.96597 0.82262 0.92724 1.21483 0.96897 0.99483 0.99659 1.22529 0.95571 1.01399 1.02153 1.88916 1.84921 1.16790 1.39417 0.89891 0.90795 0.90849 0.93817 0.90633 0.89530 0.89732 0.93654 0.89262 0.88035 0.91767 0.90565 0.93275 0.92256 0.91559 0.95170 0.89694 0.91165 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 8.09 71.98 0.58 -3.15 16 2 C 0.09 2.79 1.25 -10.03 -0.01 2.78 16 3 C -0.13 -3.52 9.00 71.98 0.65 -2.87 16 4 C -0.15 -5.52 5.24 31.62 0.17 -5.35 16 5 C 0.07 2.86 0.93 -10.19 -0.01 2.85 16 6 C -0.14 -4.47 4.22 31.76 0.13 -4.34 16 7 C -0.14 -5.41 6.39 31.96 0.20 -5.20 16 8 C 0.20 10.30 3.37 30.35 0.10 10.40 16 9 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 10 C -0.56 -31.50 8.75 25.60 0.22 -31.28 16 11 H 0.06 3.21 7.52 -2.91 -0.02 3.18 16 12 C 0.02 1.43 5.41 84.65 0.46 1.89 16 13 N -0.90 -55.41 12.93 21.45 0.28 -55.14 16 14 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 O -0.37 -18.98 8.27 -148.98 -1.23 -20.22 16 19 C 0.10 3.67 1.15 -10.77 -0.01 3.66 16 20 C -0.12 -4.63 7.97 71.98 0.57 -4.06 16 21 C -0.16 -4.27 7.23 71.98 0.52 -3.75 16 22 O -0.38 -13.51 10.38 -148.98 -1.55 -15.06 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.60 2.87 -2.39 -0.01 1.59 16 26 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 2.87 7.65 -2.39 -0.02 2.85 16 30 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 31 H 0.09 2.65 5.90 -2.39 -0.01 2.64 16 32 H 0.10 2.64 5.91 -2.39 -0.01 2.62 16 33 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.06 2.42 7.92 -2.39 -0.02 2.40 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.37 7.92 -2.39 -0.02 1.35 16 39 H 0.08 1.94 4.30 -2.39 -0.01 1.93 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.84 6.91 -2.39 -0.02 1.82 16 Total: -1.00 -68.10 305.61 4.10 -64.00 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.00 Total: 17.86 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.58 Total: -38.42 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.78 Total: -35.28 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.10 4.10 -64.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381276865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.774 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds