Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53611 * 1 3 3 C 1.53632 * 109.12532 * 2 1 4 4 C 1.54837 * 110.14899 * 239.17402 * 2 1 3 5 5 C 1.54480 * 102.72755 * 258.34295 * 4 2 1 6 6 C 1.52736 * 109.90819 * 90.18230 * 5 4 2 7 7 C 1.55287 * 103.16493 * 132.47396 * 6 5 4 8 8 C 1.55165 * 101.05610 * 330.67352 * 7 6 5 9 9 H 1.09081 * 110.39573 * 279.52736 * 8 7 6 10 10 C 1.50720 * 110.50763 * 157.11792 * 8 7 6 11 11 H 1.07996 * 119.99672 * 359.97438 * 10 8 7 12 12 C 1.37873 * 119.99760 * 180.02562 * 10 8 7 13 13 N 1.31512 * 120.00236 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99730 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47159 * 60.00042 * 14 12 10 16 16 H 1.48498 * 109.46766 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46949 * 299.99703 * 14 12 10 18 18 O 1.42753 * 110.67623 * 210.33987 * 5 4 2 19 19 C 1.53026 * 102.28160 * 328.79924 * 5 4 2 20 20 C 1.52519 * 112.20560 * 155.45322 * 19 5 4 21 21 C 1.53597 * 109.38325 * 276.57076 * 19 5 4 22 22 O 1.43553 * 105.62783 * 34.37086 * 19 5 4 23 23 H 1.08992 * 109.47030 * 300.37952 * 1 2 3 24 24 H 1.08997 * 109.46665 * 60.38244 * 1 2 3 25 25 H 1.08997 * 109.47133 * 180.37801 * 1 2 3 26 26 H 1.09003 * 109.47403 * 179.56323 * 3 2 1 27 27 H 1.08996 * 109.47384 * 299.56835 * 3 2 1 28 28 H 1.09000 * 109.47175 * 59.56672 * 3 2 1 29 29 H 1.09025 * 111.19854 * 139.88422 * 4 2 1 30 30 H 1.09103 * 111.02167 * 16.50054 * 4 2 1 31 31 H 1.10030 * 109.69230 * 16.54552 * 6 5 4 32 32 H 1.07854 * 114.27550 * 253.96695 * 6 5 4 33 33 H 1.08709 * 111.15373 * 88.69979 * 7 6 5 34 34 H 1.08890 * 110.83844 * 213.02033 * 7 6 5 35 35 H 0.96997 * 120.00193 * 180.02562 * 13 12 10 36 36 H 1.09007 * 109.46752 * 59.99703 * 20 19 5 37 37 H 1.08995 * 109.46790 * 179.97438 * 20 19 5 38 38 H 1.08995 * 109.46819 * 300.00272 * 20 19 5 39 39 H 1.09003 * 109.47314 * 59.99724 * 21 19 5 40 40 H 1.08999 * 109.47527 * 179.97438 * 21 19 5 41 41 H 1.09001 * 109.47222 * 300.00319 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5361 0.0000 0.0000 3 6 2.0395 1.4515 0.0000 4 6 2.0695 -0.7449 -1.2483 5 6 2.4725 -2.1221 -0.6763 6 6 1.2892 -3.0846 -0.7553 7 6 1.9164 -4.3668 -1.3668 8 6 3.0610 -3.7600 -2.2207 9 1 2.6711 -3.3860 -3.1683 10 6 4.1386 -4.7853 -2.4643 11 1 4.0383 -5.7810 -2.0581 12 6 5.2528 -4.4517 -3.2047 13 7 5.3756 -3.2388 -3.6980 14 14 6.5887 -5.7223 -3.5059 15 1 6.0125 -6.8845 -4.2286 16 1 7.6713 -5.1178 -4.3230 17 1 7.1444 -6.1741 -2.2051 18 8 3.5635 -2.6742 -1.4132 19 6 2.8934 -1.7708 0.7524 20 6 2.7672 -2.9598 1.6993 21 6 4.3506 -1.2854 0.7497 22 8 2.0306 -0.6971 1.1567 23 1 -0.3633 0.5197 0.8865 24 1 -0.3632 0.5079 -0.8934 25 1 -0.3633 -1.0276 0.0068 26 1 3.1294 1.4582 0.0078 27 1 1.6794 1.9610 -0.8938 28 1 1.6667 1.9654 0.8861 29 1 2.9350 -0.2349 -1.6718 30 1 1.2876 -0.8571 -2.0008 31 1 0.5354 -2.6890 -1.4524 32 1 0.8164 -3.2848 0.1932 33 1 2.3092 -5.0196 -0.5913 34 1 1.1963 -4.8884 -1.9953 35 1 6.1593 -3.0043 -4.2192 36 1 3.4039 -3.7723 1.3490 37 1 3.0776 -2.6612 2.7006 38 1 1.7306 -3.2955 1.7247 39 1 4.4383 -0.4023 0.1167 40 1 4.6518 -1.0342 1.7667 41 1 4.9958 -2.0745 0.3637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381276875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = -102.959576 kcal Electronic energy + Delta-G solvation = -21049.404975 eV Core-core repulsion = 18121.888685 eV Total energy + Delta-G solvation = -2927.516290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42578 -37.19591 -33.87944 -32.72069 -31.31335 -31.04909 -29.07315 -27.38020 -26.71160 -26.03018 -23.47231 -21.52744 -20.47538 -19.93871 -18.71496 -16.60647 -15.58647 -15.25067 -14.75826 -14.59526 -14.46407 -14.03674 -13.55608 -13.09399 -12.66325 -12.49157 -12.36360 -12.32635 -11.87518 -11.79629 -11.65713 -11.51772 -11.37390 -11.29930 -11.10505 -10.91630 -10.75642 -10.61149 -10.45325 -10.29156 -10.16767 -9.81994 -9.50480 -9.13622 -9.02687 -8.59987 -7.95141 -6.04937 -4.17749 3.30162 3.35139 3.37308 4.06045 4.39425 4.83424 4.96867 5.13867 5.16216 5.33386 5.36485 5.41294 5.55801 5.63125 5.75975 5.77768 5.85400 5.92632 6.00098 6.08123 6.12042 6.15460 6.21171 6.26694 6.32142 6.40997 6.46089 6.48392 6.54962 6.61328 6.66834 6.76840 6.79666 6.85777 6.99426 7.50016 7.61698 7.85601 8.21797 8.58085 8.95838 9.53224 11.02566 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.007006 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.891892 B = 3995.393385 C = 4061.618213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 C -0.151 4.151 4 C -0.157 4.157 5 C 0.089 3.911 6 C -0.141 4.141 7 C -0.147 4.147 8 C 0.209 3.791 9 H 0.028 0.972 10 C -0.531 4.531 11 H 0.063 0.937 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 O -0.333 6.333 19 C 0.111 3.889 20 C -0.136 4.136 21 C -0.149 4.149 22 O -0.368 6.368 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 5.103 6.813 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 C -0.209 4.209 4 C -0.194 4.194 5 C 0.047 3.953 6 C -0.179 4.179 7 C -0.185 4.185 8 C 0.154 3.846 9 H 0.046 0.954 10 C -0.568 4.568 11 H 0.081 0.919 12 C -0.127 4.127 13 N -0.500 5.500 14 Si 0.718 3.282 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 O -0.252 6.252 19 C 0.072 3.928 20 C -0.193 4.193 21 C -0.207 4.207 22 O -0.289 6.289 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.267 5.358 6.898 11.362 hybrid contribution 0.569 -0.595 -0.482 0.954 sum -6.698 4.763 6.416 10.426 Atomic orbital electron populations 1.22152 0.94546 1.02348 1.01578 1.22291 0.93372 0.92036 0.85993 1.22213 1.01760 0.95374 1.01523 1.23617 1.01695 0.97377 0.96749 1.22279 0.89205 0.92510 0.91351 1.22750 0.97093 0.96942 1.01107 1.23321 0.99027 0.96324 0.99844 1.20712 0.90808 0.84196 0.88876 0.95425 1.20985 1.05565 0.96444 1.33789 0.91918 1.25067 0.98028 0.95090 0.94564 1.70011 1.28469 1.18321 1.33151 0.86689 0.81476 0.81615 0.78379 1.20104 1.21187 1.20047 1.89036 1.27921 1.50379 1.57849 1.21848 0.90468 0.87084 0.93410 1.21738 1.02269 0.96910 0.98431 1.22162 0.95893 1.02339 1.00257 1.88459 1.64900 1.45605 1.29912 0.92446 0.91928 0.92141 0.92181 0.91941 0.92500 0.89891 0.90813 0.92327 0.91002 0.91586 0.92114 0.92834 0.90517 0.92644 0.92361 0.92921 0.93605 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.78 37.47 0.33 -1.64 16 2 C 0.10 1.60 1.30 -89.01 -0.12 1.48 16 3 C -0.15 -2.08 8.79 37.49 0.33 -1.75 16 4 C -0.16 -2.82 4.92 -24.99 -0.12 -2.94 16 5 C 0.09 1.75 0.71 -89.97 -0.06 1.68 16 6 C -0.14 -2.55 4.91 -25.65 -0.13 -2.68 16 7 C -0.15 -3.01 6.58 -24.37 -0.16 -3.17 16 8 C 0.21 5.26 3.15 -26.73 -0.08 5.18 16 9 H 0.03 0.76 8.15 -51.88 -0.42 0.34 16 10 C -0.53 -14.57 8.83 -34.43 -0.30 -14.87 16 11 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 12 C 0.08 2.18 5.44 -17.82 -0.10 2.09 16 13 N -0.86 -25.14 13.10 55.43 0.73 -24.41 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 O -0.33 -8.22 8.86 -35.23 -0.31 -8.54 16 19 C 0.11 2.04 1.01 -90.54 -0.09 1.94 16 20 C -0.14 -2.27 8.42 36.91 0.31 -1.96 16 21 C -0.15 -2.81 8.27 37.47 0.31 -2.50 16 22 O -0.37 -6.46 10.10 -35.23 -0.36 -6.81 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.82 7.43 -51.93 -0.39 0.43 16 26 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.62 7.69 -51.91 -0.40 1.22 16 30 H 0.07 1.26 7.08 -51.87 -0.37 0.89 16 31 H 0.06 0.99 7.31 -51.34 -0.38 0.62 16 32 H 0.07 1.18 6.05 -52.57 -0.32 0.86 16 33 H 0.07 1.34 8.05 -52.09 -0.42 0.92 16 34 H 0.06 1.14 8.13 -51.99 -0.42 0.72 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.91 6.28 -51.93 -0.33 0.58 16 39 H 0.05 1.00 7.21 -51.93 -0.37 0.63 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.70 7.39 -51.93 -0.38 1.32 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -29.17 315.56 -7.19 -36.36 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.10 Total: 1.71 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 0.11 Total: -19.14 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.73 Total: -24.41 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.67 Total: -15.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.17 -7.19 -36.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381276875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.601 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds