Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53611 * 1 3 3 C 1.53632 * 109.12532 * 2 1 4 4 C 1.54837 * 110.14899 * 239.17402 * 2 1 3 5 5 C 1.54480 * 102.72755 * 258.34295 * 4 2 1 6 6 C 1.52736 * 109.90819 * 90.18230 * 5 4 2 7 7 C 1.55287 * 103.16493 * 132.47396 * 6 5 4 8 8 C 1.55165 * 101.05610 * 330.67352 * 7 6 5 9 9 H 1.09081 * 110.39573 * 279.52736 * 8 7 6 10 10 C 1.50720 * 110.50763 * 157.11792 * 8 7 6 11 11 H 1.07996 * 119.99672 * 359.97438 * 10 8 7 12 12 C 1.37873 * 119.99760 * 180.02562 * 10 8 7 13 13 N 1.31512 * 120.00236 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 119.99730 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47159 * 60.00042 * 14 12 10 16 16 H 1.48498 * 109.46766 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46949 * 299.99703 * 14 12 10 18 18 O 1.42753 * 110.67623 * 210.33987 * 5 4 2 19 19 C 1.53026 * 102.28160 * 328.79924 * 5 4 2 20 20 C 1.52519 * 112.20560 * 155.45322 * 19 5 4 21 21 C 1.53597 * 109.38325 * 276.57076 * 19 5 4 22 22 O 1.43553 * 105.62783 * 34.37086 * 19 5 4 23 23 H 1.08992 * 109.47030 * 300.37952 * 1 2 3 24 24 H 1.08997 * 109.46665 * 60.38244 * 1 2 3 25 25 H 1.08997 * 109.47133 * 180.37801 * 1 2 3 26 26 H 1.09003 * 109.47403 * 179.56323 * 3 2 1 27 27 H 1.08996 * 109.47384 * 299.56835 * 3 2 1 28 28 H 1.09000 * 109.47175 * 59.56672 * 3 2 1 29 29 H 1.09025 * 111.19854 * 139.88422 * 4 2 1 30 30 H 1.09103 * 111.02167 * 16.50054 * 4 2 1 31 31 H 1.10030 * 109.69230 * 16.54552 * 6 5 4 32 32 H 1.07854 * 114.27550 * 253.96695 * 6 5 4 33 33 H 1.08709 * 111.15373 * 88.69979 * 7 6 5 34 34 H 1.08890 * 110.83844 * 213.02033 * 7 6 5 35 35 H 0.96997 * 120.00193 * 180.02562 * 13 12 10 36 36 H 1.09007 * 109.46752 * 59.99703 * 20 19 5 37 37 H 1.08995 * 109.46790 * 179.97438 * 20 19 5 38 38 H 1.08995 * 109.46819 * 300.00272 * 20 19 5 39 39 H 1.09003 * 109.47314 * 59.99724 * 21 19 5 40 40 H 1.08999 * 109.47527 * 179.97438 * 21 19 5 41 41 H 1.09001 * 109.47222 * 300.00319 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5361 0.0000 0.0000 3 6 2.0395 1.4515 0.0000 4 6 2.0695 -0.7449 -1.2483 5 6 2.4725 -2.1221 -0.6763 6 6 1.2892 -3.0846 -0.7553 7 6 1.9164 -4.3668 -1.3668 8 6 3.0610 -3.7600 -2.2207 9 1 2.6711 -3.3860 -3.1683 10 6 4.1386 -4.7853 -2.4643 11 1 4.0383 -5.7810 -2.0581 12 6 5.2528 -4.4517 -3.2047 13 7 5.3756 -3.2388 -3.6980 14 14 6.5887 -5.7223 -3.5059 15 1 6.0125 -6.8845 -4.2286 16 1 7.6713 -5.1178 -4.3230 17 1 7.1444 -6.1741 -2.2051 18 8 3.5635 -2.6742 -1.4132 19 6 2.8934 -1.7708 0.7524 20 6 2.7672 -2.9598 1.6993 21 6 4.3506 -1.2854 0.7497 22 8 2.0306 -0.6971 1.1567 23 1 -0.3633 0.5197 0.8865 24 1 -0.3632 0.5079 -0.8934 25 1 -0.3633 -1.0276 0.0068 26 1 3.1294 1.4582 0.0078 27 1 1.6794 1.9610 -0.8938 28 1 1.6667 1.9654 0.8861 29 1 2.9350 -0.2349 -1.6718 30 1 1.2876 -0.8571 -2.0008 31 1 0.5354 -2.6890 -1.4524 32 1 0.8164 -3.2848 0.1932 33 1 2.3092 -5.0196 -0.5913 34 1 1.1963 -4.8884 -1.9953 35 1 6.1593 -3.0043 -4.2192 36 1 3.4039 -3.7723 1.3490 37 1 3.0776 -2.6612 2.7006 38 1 1.7306 -3.2955 1.7247 39 1 4.4383 -0.4023 0.1167 40 1 4.6518 -1.0342 1.7667 41 1 4.9958 -2.0745 0.3637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381276875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = -120.060290 kcal Electronic energy + Delta-G solvation = -21050.146518 eV Core-core repulsion = 18121.888685 eV Total energy + Delta-G solvation = -2928.257833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90022 -38.81911 -35.23070 -34.69254 -32.92339 -32.66702 -30.57838 -28.76204 -28.10458 -27.60334 -25.20261 -23.04114 -22.18003 -21.36646 -20.18267 -18.63989 -17.13609 -16.84978 -16.49603 -16.07399 -15.98248 -15.58628 -14.84834 -14.69188 -14.23143 -13.98114 -13.80051 -13.69159 -13.52600 -13.21329 -12.97874 -12.87521 -12.81789 -12.70365 -12.68235 -12.60031 -12.38457 -12.16951 -12.13452 -11.99390 -11.63166 -11.28345 -11.12423 -11.00205 -10.68128 -10.42837 -9.76892 -8.16070 -6.35912 1.40445 1.42889 1.50262 2.40102 2.70888 3.03902 3.46759 3.59398 3.78262 3.89762 3.97261 4.02740 4.17173 4.22477 4.32606 4.50687 4.56460 4.64932 4.65412 4.77551 4.79483 4.82234 4.89717 4.92148 4.95385 4.96683 4.97799 5.08845 5.15459 5.18870 5.23807 5.28821 5.39362 5.42647 5.44009 5.58577 5.75012 6.18074 6.22442 6.62096 7.00547 7.39733 8.91704 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.007006 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.891892 B = 3995.393385 C = 4061.618213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 C -0.150 4.150 4 C -0.156 4.156 5 C 0.073 3.927 6 C -0.130 4.130 7 C -0.138 4.138 8 C 0.202 3.798 9 H -0.008 1.008 10 C -0.550 4.550 11 H 0.065 0.935 12 C 0.025 3.975 13 N -0.902 5.902 14 Si 0.958 3.042 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.271 1.271 18 O -0.362 6.362 19 C 0.113 3.887 20 C -0.133 4.133 21 C -0.144 4.144 22 O -0.370 6.370 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 4.991 8.181 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.061 3.939 3 C -0.207 4.207 4 C -0.194 4.194 5 C 0.032 3.968 6 C -0.167 4.167 7 C -0.176 4.176 8 C 0.147 3.853 9 H 0.010 0.990 10 C -0.587 4.587 11 H 0.084 0.916 12 C -0.177 4.177 13 N -0.539 5.539 14 Si 0.782 3.218 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.196 1.196 18 O -0.282 6.282 19 C 0.073 3.927 20 C -0.190 4.190 21 C -0.202 4.202 22 O -0.291 6.291 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.735 5.241 8.274 13.124 hybrid contribution 1.003 -0.491 -0.912 1.441 sum -7.732 4.751 7.363 11.686 Atomic orbital electron populations 1.22140 0.92022 1.02828 1.03210 1.22490 0.95185 0.92284 0.83923 1.22213 1.00815 0.94507 1.03158 1.23581 1.00953 0.96680 0.98150 1.22602 0.88777 0.93449 0.91953 1.22705 0.96493 0.94958 1.02524 1.23185 0.97719 0.97329 0.99327 1.20553 0.91796 0.84315 0.88630 0.99026 1.21414 1.06332 0.97263 1.33711 0.91642 1.25914 1.00421 0.96996 0.94372 1.70154 1.29159 1.20349 1.34244 0.85634 0.78494 0.79270 0.78371 1.18827 1.20999 1.19562 1.88957 1.30317 1.50625 1.58294 1.21790 0.89964 0.87978 0.92941 1.21705 1.02943 0.95614 0.98736 1.22091 0.96383 1.00712 1.00975 1.88448 1.64653 1.45380 1.30574 0.90972 0.90199 0.92258 0.93779 0.90304 0.90860 0.92534 0.90178 0.91040 0.88550 0.91502 0.90611 0.93009 0.92055 0.90894 0.90853 0.94115 0.91513 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.78 72.19 0.63 -2.69 16 2 C 0.10 2.93 1.30 -9.75 -0.01 2.91 16 3 C -0.15 -3.84 8.79 72.19 0.63 -3.20 16 4 C -0.16 -5.57 4.92 31.72 0.16 -5.41 16 5 C 0.07 2.88 0.71 -10.37 -0.01 2.87 16 6 C -0.13 -4.45 4.91 31.29 0.15 -4.29 16 7 C -0.14 -5.53 6.58 32.12 0.21 -5.31 16 8 C 0.20 10.46 3.15 30.60 0.10 10.56 16 9 H -0.01 -0.45 8.15 -2.34 -0.02 -0.47 16 10 C -0.55 -30.85 8.83 25.61 0.23 -30.62 16 11 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 12 C 0.03 1.43 5.44 84.65 0.46 1.89 16 13 N -0.90 -54.38 13.10 21.45 0.28 -54.10 16 14 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 15 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 O -0.36 -18.49 8.86 -148.98 -1.32 -19.81 16 19 C 0.11 4.02 1.01 -10.74 -0.01 4.01 16 20 C -0.13 -4.18 8.42 71.82 0.60 -3.57 16 21 C -0.14 -5.49 8.27 72.18 0.60 -4.89 16 22 O -0.37 -12.15 10.10 -148.98 -1.51 -13.66 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.38 7.43 -2.39 -0.02 1.36 16 26 H 0.04 1.26 7.68 -2.39 -0.02 1.24 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 2.29 7.69 -2.37 -0.02 2.27 16 30 H 0.08 2.69 7.08 -2.33 -0.02 2.68 16 31 H 0.07 2.26 7.31 -1.84 -0.01 2.25 16 32 H 0.10 2.84 6.05 -2.99 -0.02 2.82 16 33 H 0.07 2.65 8.05 -2.54 -0.02 2.63 16 34 H 0.08 2.76 8.13 -2.45 -0.02 2.74 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.06 6.28 -2.39 -0.01 2.04 16 39 H 0.04 1.60 7.21 -2.39 -0.02 1.58 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.23 7.39 -2.39 -0.02 2.21 16 Total: -1.00 -64.27 315.56 4.21 -60.07 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.98 Total: 19.30 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 3.74 Total: -37.77 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.28 Total: -54.10 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -2.83 Total: -33.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.27 4.21 -60.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381276875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.994 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds