Wall clock time and date at job start Mon Mar 30 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.09002 * 109.46840 * 54.89447 * 3 2 1 5 5 N 1.46897 * 109.47159 * 174.89684 * 3 2 1 6 6 C 1.46901 * 111.00082 * 275.02385 * 5 3 2 7 7 H 1.09006 * 109.47019 * 34.58027 * 6 5 3 8 8 C 1.53001 * 109.46665 * 274.58452 * 6 5 3 9 9 C 1.50701 * 109.47320 * 154.58166 * 6 5 3 10 10 H 1.08002 * 119.99754 * 4.88757 * 9 6 5 11 11 C 1.37881 * 119.99613 * 184.88292 * 9 6 5 12 12 N 1.31504 * 120.00102 * 7.57007 * 11 9 6 13 13 Si 1.86797 * 119.99439 * 187.55887 * 11 9 6 14 14 H 1.48506 * 109.47089 * 94.99227 * 13 11 9 15 15 H 1.48501 * 109.47370 * 214.98880 * 13 11 9 16 16 H 1.48502 * 109.47470 * 334.99324 * 13 11 9 17 17 C 1.50698 * 109.47142 * 294.89611 * 3 2 1 18 18 N 1.29027 * 124.91870 * 285.02514 * 17 3 2 19 19 C 1.31780 * 117.12826 * 179.97438 * 18 17 3 20 20 C 1.33646 * 114.49741 * 0.02562 * 19 18 17 21 21 C 1.50703 * 126.03400 * 180.02562 * 20 19 18 22 22 S 1.70981 * 124.91359 * 104.72048 * 17 3 2 23 23 H 1.09007 * 109.46879 * 176.29157 * 1 2 3 24 24 H 1.08992 * 109.47236 * 56.29212 * 1 2 3 25 25 H 1.09005 * 109.46680 * 296.28851 * 1 2 3 26 26 H 1.08999 * 109.47238 * 120.00160 * 2 1 3 27 27 H 1.09000 * 109.47047 * 240.00334 * 2 1 3 28 28 H 1.00903 * 110.99870 * 38.97726 * 5 3 2 29 29 H 1.09005 * 109.46661 * 184.48074 * 8 6 5 30 30 H 1.09000 * 109.46997 * 304.47211 * 8 6 5 31 31 H 1.08994 * 109.47659 * 64.47808 * 8 6 5 32 32 H 0.97000 * 119.99927 * 179.97438 * 12 11 9 33 33 H 1.07999 * 122.75226 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47613 * 90.02015 * 21 20 19 35 35 H 1.09004 * 109.46410 * 210.02407 * 21 20 19 36 36 H 1.09002 * 109.46839 * 330.01512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9820 0.8408 5 7 3.5038 1.4444 0.1232 6 6 3.9137 1.3655 1.5316 7 1 3.2061 0.7451 2.0818 8 6 3.9365 2.7711 2.1355 9 6 5.2899 0.7579 1.6211 10 1 5.8405 0.5330 0.7196 11 6 5.8460 0.4893 2.8539 12 7 5.1232 0.6224 3.9444 13 14 7.6260 -0.0642 2.9747 14 1 8.4937 1.1127 3.2346 15 1 7.7672 -1.0383 4.0867 16 1 8.0324 -0.7067 1.6991 17 6 1.6435 2.1155 -1.2888 18 7 2.2006 1.9054 -2.4335 19 6 1.7299 2.5792 -3.4635 20 6 0.7198 3.4041 -3.1713 21 6 -0.0093 4.2929 -4.1458 22 16 0.3855 3.2625 -1.4471 23 1 -0.3633 -1.0256 -0.0665 24 1 -0.3633 0.5703 -0.8548 25 1 -0.3633 0.4552 0.9214 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9129 0.6953 -0.4150 29 1 4.3165 2.7220 3.1560 30 1 4.5833 3.4131 1.5375 31 1 2.9260 3.1797 2.1434 32 1 5.5144 0.4330 4.8116 33 1 2.1283 2.4742 -4.4618 34 1 -0.8563 3.7519 -4.5675 35 1 -0.3677 5.1826 -3.6279 36 1 0.6691 4.5873 -4.9466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382376717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:42 Heat of formation + Delta-G solvation = 27.579951 kcal Electronic energy + Delta-G solvation = -16762.180213 eV Core-core repulsion = 14179.537069 eV Total energy + Delta-G solvation = -2582.643144 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53968 -36.87178 -33.83630 -32.22314 -31.53074 -28.81151 -26.97044 -25.29651 -24.57955 -23.40880 -21.51078 -20.00137 -18.37117 -17.87850 -16.50830 -15.26761 -14.92600 -14.76483 -14.13067 -14.03107 -13.80267 -13.36953 -13.07531 -12.73838 -12.58465 -12.21260 -12.07808 -11.88139 -11.38725 -11.10679 -10.93989 -10.88573 -10.66430 -10.57094 -10.41521 -10.21336 -9.95324 -9.25341 -8.95862 -8.88464 -8.49192 -8.45314 -7.28209 -6.05626 -4.08106 0.96798 1.55396 1.99471 3.14544 3.31128 3.38094 3.41967 4.41704 4.51079 4.99223 5.12299 5.16012 5.27637 5.30479 5.34701 5.38495 5.50113 5.70276 5.76886 5.82102 5.96613 6.04135 6.23037 6.38095 6.43317 6.62926 6.80494 7.09472 7.15092 7.38383 7.78993 7.84070 8.09377 8.16751 8.36263 8.65724 9.02784 9.57164 11.03319 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.005185 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.823042 B = 5399.059400 C = 5615.672461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.161 3.839 4 H 0.089 0.911 5 N -0.672 5.672 6 C 0.211 3.789 7 H 0.012 0.988 8 C -0.121 4.121 9 C -0.518 4.518 10 H 0.061 0.939 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.098 3.902 18 N -0.464 5.464 19 C 0.038 3.962 20 C -0.245 4.245 21 C -0.069 4.069 22 S 0.092 5.908 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.343 0.657 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.006 0.994 32 H 0.261 0.739 33 H 0.168 0.832 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 3.996 -11.181 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.047 3.953 4 H 0.107 0.893 5 N -0.303 5.303 6 C 0.103 3.897 7 H 0.030 0.970 8 C -0.180 4.180 9 C -0.557 4.557 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.182 4.182 18 N -0.176 5.176 19 C -0.113 4.113 20 C -0.366 4.366 21 C -0.128 4.128 22 S 0.347 5.653 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.899 4.744 -10.334 16.458 hybrid contribution 1.183 -1.196 -0.514 1.759 sum -10.716 3.547 -10.848 15.655 Atomic orbital electron populations 1.21808 0.96148 1.01473 1.01516 1.22248 0.95933 0.97014 1.03372 1.20161 0.92713 0.93456 0.89017 0.89257 1.60607 1.02511 1.52527 1.14698 1.19170 0.95504 0.93161 0.81846 0.97009 1.21689 0.96751 0.97810 1.01719 1.21220 1.00986 1.40909 0.92564 0.92081 1.24897 0.97862 0.95279 0.95730 1.69954 1.35694 1.49158 0.97956 0.86551 0.85218 0.78365 0.77683 1.20678 1.21360 1.19829 1.27355 0.94778 0.97892 0.98140 1.66180 1.27838 1.25465 0.98149 1.21715 0.95385 0.95175 0.99001 1.25828 1.05450 1.07894 0.97467 1.20135 0.99296 0.97126 0.96242 1.83884 1.35930 1.41199 1.04273 0.92774 0.93240 0.92580 0.90103 0.91393 0.83791 0.91416 0.94710 0.97473 0.92933 0.81496 0.91110 0.91468 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.79 37.16 0.36 -1.71 16 2 C -0.14 -2.40 5.36 -26.73 -0.14 -2.55 16 3 C 0.16 2.96 2.37 -68.87 -0.16 2.80 16 4 H 0.09 1.67 7.18 -51.93 -0.37 1.30 16 5 N -0.67 -14.64 6.00 -102.17 -0.61 -15.25 16 6 C 0.21 5.25 2.27 -68.86 -0.16 5.09 16 7 H 0.01 0.33 7.07 -51.93 -0.37 -0.04 16 8 C -0.12 -2.97 9.26 37.16 0.34 -2.63 16 9 C -0.52 -14.15 8.50 -34.44 -0.29 -14.44 16 10 H 0.06 1.67 7.67 -52.49 -0.40 1.27 16 11 C 0.06 1.77 5.19 -17.82 -0.09 1.68 16 12 N -0.89 -25.23 12.03 55.43 0.67 -24.56 16 13 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.10 1.67 5.27 -13.46 -0.07 1.60 16 18 N -0.46 -8.11 10.50 -11.86 -0.12 -8.23 16 19 C 0.04 0.55 11.25 -19.18 -0.22 0.34 16 20 C -0.25 -3.14 6.60 -35.92 -0.24 -3.38 16 21 C -0.07 -0.61 10.42 36.01 0.38 -0.23 16 22 S 0.09 1.29 22.72 -107.50 -2.44 -1.15 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.66 6.85 -51.93 -0.36 0.31 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.46 7.38 -51.93 -0.38 1.08 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.34 7.60 7.99 -39.29 -0.31 7.29 16 29 H 0.07 1.79 6.68 -51.93 -0.35 1.44 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.01 0.14 7.51 -51.93 -0.39 -0.25 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -29.08 310.09 -8.60 -37.68 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.45 Total: 3.97 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.29 Total: -13.43 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.07 Total: -48.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.44 Total: -1.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.08 -8.60 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382376717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.262 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds