Wall clock time and date at job start Mon Mar 30 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.09002 * 109.46840 * 54.89447 * 3 2 1 5 5 N 1.46897 * 109.47159 * 174.89684 * 3 2 1 6 6 C 1.46901 * 111.00082 * 275.02385 * 5 3 2 7 7 H 1.09006 * 109.47019 * 34.58027 * 6 5 3 8 8 C 1.53001 * 109.46665 * 274.58452 * 6 5 3 9 9 C 1.50701 * 109.47320 * 154.58166 * 6 5 3 10 10 H 1.08002 * 119.99754 * 4.88757 * 9 6 5 11 11 C 1.37881 * 119.99613 * 184.88292 * 9 6 5 12 12 N 1.31504 * 120.00102 * 7.57007 * 11 9 6 13 13 Si 1.86797 * 119.99439 * 187.55887 * 11 9 6 14 14 H 1.48506 * 109.47089 * 94.99227 * 13 11 9 15 15 H 1.48501 * 109.47370 * 214.98880 * 13 11 9 16 16 H 1.48502 * 109.47470 * 334.99324 * 13 11 9 17 17 C 1.50698 * 109.47142 * 294.89611 * 3 2 1 18 18 N 1.29027 * 124.91870 * 285.02514 * 17 3 2 19 19 C 1.31780 * 117.12826 * 179.97438 * 18 17 3 20 20 C 1.33646 * 114.49741 * 0.02562 * 19 18 17 21 21 C 1.50703 * 126.03400 * 180.02562 * 20 19 18 22 22 S 1.70981 * 124.91359 * 104.72048 * 17 3 2 23 23 H 1.09007 * 109.46879 * 176.29157 * 1 2 3 24 24 H 1.08992 * 109.47236 * 56.29212 * 1 2 3 25 25 H 1.09005 * 109.46680 * 296.28851 * 1 2 3 26 26 H 1.08999 * 109.47238 * 120.00160 * 2 1 3 27 27 H 1.09000 * 109.47047 * 240.00334 * 2 1 3 28 28 H 1.00903 * 110.99870 * 38.97726 * 5 3 2 29 29 H 1.09005 * 109.46661 * 184.48074 * 8 6 5 30 30 H 1.09000 * 109.46997 * 304.47211 * 8 6 5 31 31 H 1.08994 * 109.47659 * 64.47808 * 8 6 5 32 32 H 0.97000 * 119.99927 * 179.97438 * 12 11 9 33 33 H 1.07999 * 122.75226 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.47613 * 90.02015 * 21 20 19 35 35 H 1.09004 * 109.46410 * 210.02407 * 21 20 19 36 36 H 1.09002 * 109.46839 * 330.01512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9820 0.8408 5 7 3.5038 1.4444 0.1232 6 6 3.9137 1.3655 1.5316 7 1 3.2061 0.7451 2.0818 8 6 3.9365 2.7711 2.1355 9 6 5.2899 0.7579 1.6211 10 1 5.8405 0.5330 0.7196 11 6 5.8460 0.4893 2.8539 12 7 5.1232 0.6224 3.9444 13 14 7.6260 -0.0642 2.9747 14 1 8.4937 1.1127 3.2346 15 1 7.7672 -1.0383 4.0867 16 1 8.0324 -0.7067 1.6991 17 6 1.6435 2.1155 -1.2888 18 7 2.2006 1.9054 -2.4335 19 6 1.7299 2.5792 -3.4635 20 6 0.7198 3.4041 -3.1713 21 6 -0.0093 4.2929 -4.1458 22 16 0.3855 3.2625 -1.4471 23 1 -0.3633 -1.0256 -0.0665 24 1 -0.3633 0.5703 -0.8548 25 1 -0.3633 0.4552 0.9214 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9129 0.6953 -0.4150 29 1 4.3165 2.7220 3.1560 30 1 4.5833 3.4131 1.5375 31 1 2.9260 3.1797 2.1434 32 1 5.5144 0.4330 4.8116 33 1 2.1283 2.4742 -4.4618 34 1 -0.8563 3.7519 -4.5675 35 1 -0.3677 5.1826 -3.6279 36 1 0.6691 4.5873 -4.9466 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382376717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:42 Heat of formation + Delta-G solvation = 9.148081 kcal Electronic energy + Delta-G solvation = -16762.979479 eV Core-core repulsion = 14179.537069 eV Total energy + Delta-G solvation = -2583.442410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73867 -38.44417 -35.60706 -33.47909 -33.08555 -30.41150 -28.32936 -27.24392 -25.89881 -24.63827 -22.82621 -21.84365 -19.71679 -19.09939 -18.34564 -16.94004 -16.48499 -16.07223 -15.59346 -15.41083 -15.28737 -14.61237 -14.33536 -13.91687 -13.69862 -13.55245 -13.45639 -13.38878 -13.08822 -12.76790 -12.54448 -12.41096 -12.28423 -12.26245 -12.00136 -11.96892 -11.71310 -10.95844 -10.58180 -10.41747 -10.07335 -9.60580 -9.03173 -8.16450 -6.25774 -0.16849 0.44514 0.86013 1.41296 1.43265 1.53311 1.98610 2.42210 3.15295 3.31484 3.63793 3.90940 4.00962 4.12322 4.27750 4.34344 4.45973 4.55956 4.75835 4.77347 4.84216 4.95574 5.02507 5.05096 5.10214 5.12560 5.16865 5.27355 5.40735 5.42250 5.66598 5.81645 6.14768 6.43633 6.73212 6.97023 6.98056 7.43502 8.92166 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.005185 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.823042 B = 5399.059400 C = 5615.672461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.164 3.836 4 H 0.082 0.918 5 N -0.674 5.674 6 C 0.218 3.782 7 H -0.013 1.013 8 C -0.110 4.110 9 C -0.537 4.537 10 H 0.054 0.946 11 C 0.020 3.980 12 N -0.915 5.915 13 Si 0.957 3.043 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.061 3.939 18 N -0.488 5.488 19 C 0.011 3.989 20 C -0.224 4.224 21 C -0.071 4.071 22 S 0.121 5.879 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.337 0.663 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.190 0.810 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 4.799 -12.739 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.049 3.951 4 H 0.100 0.900 5 N -0.305 5.305 6 C 0.110 3.890 7 H 0.004 0.996 8 C -0.168 4.168 9 C -0.575 4.575 10 H 0.072 0.928 11 C -0.180 4.180 12 N -0.554 5.554 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.217 4.217 18 N -0.202 5.202 19 C -0.139 4.139 20 C -0.345 4.345 21 C -0.130 4.130 22 S 0.376 5.624 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.207 0.793 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.848 5.547 -11.901 18.371 hybrid contribution 1.378 -1.378 -0.124 1.953 sum -11.470 4.170 -12.025 17.134 Atomic orbital electron populations 1.21740 0.93588 1.02714 1.02054 1.22112 0.98144 0.95717 1.01861 1.20084 0.90344 0.94577 0.90056 0.90028 1.60528 1.05220 1.52228 1.12496 1.18934 0.94045 0.92621 0.83436 0.99581 1.21519 0.97597 0.97613 1.00077 1.21501 1.02142 1.41356 0.92527 0.92780 1.25635 1.01630 0.95358 0.95385 1.70055 1.37232 1.49800 0.98352 0.85570 0.80424 0.78021 0.77759 1.20278 1.20751 1.19431 1.26892 0.97215 1.00165 0.97448 1.66134 1.28744 1.26427 0.98927 1.22081 0.96512 0.95981 0.99313 1.26409 1.04177 1.06651 0.97263 1.20349 0.99935 0.96861 0.95828 1.83705 1.33979 1.39351 1.05362 0.91192 0.92649 0.92002 0.92394 0.91964 0.84456 0.93655 0.95118 0.95584 0.92774 0.79290 0.89162 0.90395 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.79 71.98 0.70 -3.10 16 2 C -0.14 -4.67 5.36 30.60 0.16 -4.51 16 3 C 0.16 6.11 2.37 44.17 0.10 6.21 16 4 H 0.08 3.11 7.18 -2.39 -0.02 3.09 16 5 N -0.67 -30.21 6.00 -477.15 -2.87 -33.07 16 6 C 0.22 11.20 2.27 44.17 0.10 11.30 16 7 H -0.01 -0.75 7.07 -2.38 -0.02 -0.76 16 8 C -0.11 -5.47 9.26 71.98 0.67 -4.81 16 9 C -0.54 -29.99 8.50 25.60 0.22 -29.77 16 10 H 0.05 3.03 7.67 -2.91 -0.02 3.01 16 11 C 0.02 1.10 5.19 84.66 0.44 1.54 16 12 N -0.92 -52.82 12.03 21.45 0.26 -52.57 16 13 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.06 2.06 5.27 88.52 0.47 2.53 16 18 N -0.49 -16.79 10.50 -191.44 -2.01 -18.80 16 19 C 0.01 0.30 11.25 83.66 0.94 1.24 16 20 C -0.22 -5.10 6.60 24.64 0.16 -4.94 16 21 C -0.07 -0.96 10.42 71.24 0.74 -0.22 16 22 S 0.12 3.18 22.72 -56.49 -1.28 1.90 16 23 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.05 1.41 6.85 -2.39 -0.02 1.39 16 25 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.06 2.20 7.38 -2.39 -0.02 2.18 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.34 15.53 7.99 -89.69 -0.72 14.81 16 29 H 0.04 2.44 6.68 -2.38 -0.02 2.42 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.15 7.51 -2.39 -0.02 1.13 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -62.89 310.09 1.18 -61.70 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.35 Total: 19.26 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.71 Total: -24.53 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.62 Total: -104.44 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.28 Total: 1.90 kcal Total: -62.89 1.18 -61.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382376717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.852 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds