Wall clock time and date at job start Mon Mar 30 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47415 * 2 1 4 4 H 1.09004 * 109.47047 * 305.36492 * 3 2 1 5 5 N 1.46904 * 109.47583 * 185.36336 * 3 2 1 6 6 C 1.46890 * 110.99972 * 85.70358 * 5 3 2 7 7 H 1.09004 * 109.47500 * 324.55188 * 6 5 3 8 8 C 1.52998 * 109.47290 * 84.55408 * 6 5 3 9 9 C 1.50698 * 109.47071 * 204.55393 * 6 5 3 10 10 H 1.07996 * 119.99998 * 359.97438 * 9 6 5 11 11 C 1.37881 * 119.99965 * 180.02562 * 9 6 5 12 12 N 1.31510 * 120.00232 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99834 * 179.97438 * 11 9 6 14 14 H 1.48510 * 109.47299 * 89.99616 * 13 11 9 15 15 H 1.48496 * 109.47238 * 209.99522 * 13 11 9 16 16 H 1.48498 * 109.47370 * 329.99551 * 13 11 9 17 17 C 1.50700 * 109.47240 * 65.36256 * 3 2 1 18 18 N 1.29024 * 124.91711 * 74.69513 * 17 3 2 19 19 C 1.31788 * 117.12465 * 179.81480 * 18 17 3 20 20 C 1.33642 * 114.49912 * 0.47718 * 19 18 17 21 21 C 1.50698 * 126.03600 * 179.78816 * 20 19 18 22 22 S 1.70987 * 124.91648 * 255.00501 * 17 3 2 23 23 H 1.08996 * 109.47144 * 303.72767 * 1 2 3 24 24 H 1.09007 * 109.46640 * 63.72688 * 1 2 3 25 25 H 1.08996 * 109.47074 * 183.71982 * 1 2 3 26 26 H 1.08998 * 109.47417 * 239.99711 * 2 1 3 27 27 H 1.09006 * 109.47053 * 119.99898 * 2 1 3 28 28 H 1.00899 * 110.99605 * 321.75103 * 5 3 2 29 29 H 1.08995 * 109.47476 * 59.99887 * 8 6 5 30 30 H 1.09002 * 109.47579 * 180.02562 * 8 6 5 31 31 H 1.08999 * 109.47179 * 299.99707 * 8 6 5 32 32 H 0.96998 * 120.00467 * 180.02562 * 12 11 9 33 33 H 1.08003 * 122.74745 * 180.22357 * 19 18 17 34 34 H 1.08999 * 109.47496 * 269.95468 * 21 20 19 35 35 H 1.09003 * 109.46914 * 29.95740 * 21 20 19 36 36 H 1.08999 * 109.46984 * 149.95501 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6004 1.9833 -0.8381 5 7 3.5034 1.4445 -0.1295 6 6 3.9071 1.3852 -1.5405 7 1 3.2052 0.7608 -2.0934 8 6 3.9081 2.7968 -2.1306 9 6 5.2908 0.7970 -1.6428 10 1 5.8177 0.4977 -0.7490 11 6 5.8845 0.6420 -2.8776 12 7 5.2430 1.0070 -3.9661 13 14 7.5999 -0.0864 -3.0043 14 1 7.5023 -1.5618 -3.1424 15 1 8.2905 0.4773 -4.1920 16 1 8.3707 0.2462 -1.7794 17 6 1.6491 2.1135 1.2915 18 7 2.2077 1.8979 2.4344 19 6 1.7448 2.5740 3.4665 20 6 0.7331 3.3990 3.1799 21 6 0.0091 4.2872 4.1586 22 16 0.3962 3.2654 1.4557 23 1 -0.3633 0.5706 0.8547 24 1 -0.3633 0.4549 -0.9216 25 1 -0.3633 -1.0255 0.0667 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9139 0.6874 0.3962 29 1 4.6100 3.4212 -1.5778 30 1 4.2072 2.7528 -3.1778 31 1 2.9073 3.2222 -2.0566 32 1 5.6605 0.8977 -4.8348 33 1 2.1472 2.4671 4.4630 34 1 -0.8360 3.7461 4.5841 35 1 0.6914 4.5809 4.9563 36 1 -0.3518 5.1773 3.6432 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382376721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:51 Heat of formation + Delta-G solvation = 29.000900 kcal Electronic energy + Delta-G solvation = -16766.184684 eV Core-core repulsion = 14183.603156 eV Total energy + Delta-G solvation = -2582.581527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.53660 -36.87821 -33.86206 -32.22522 -31.52482 -28.75491 -26.93943 -25.31954 -24.58246 -23.41081 -21.51700 -19.96817 -18.36747 -17.87779 -16.51246 -15.26706 -14.92916 -14.76800 -14.13606 -14.03033 -13.82756 -13.36910 -13.07491 -12.73823 -12.58953 -12.23556 -12.06729 -11.89732 -11.29010 -11.09557 -10.94512 -10.88341 -10.70696 -10.55367 -10.35764 -10.12361 -9.98266 -9.25024 -8.95430 -8.84983 -8.51488 -8.44873 -7.28287 -6.02757 -4.08583 0.97193 1.55811 1.99860 3.14790 3.30575 3.37301 3.42093 4.41115 4.51266 4.99547 5.12288 5.15668 5.27452 5.29294 5.34832 5.38764 5.49425 5.70558 5.76370 5.82122 5.96514 6.03290 6.21380 6.37357 6.41842 6.62025 6.84917 7.12609 7.19783 7.46991 7.78609 7.87679 8.10137 8.26022 8.39004 8.64891 9.01627 9.57300 11.03678 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.005173 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.765548 B = 5411.097698 C = 5594.586031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.161 3.839 4 H 0.090 0.910 5 N -0.671 5.671 6 C 0.212 3.788 7 H 0.005 0.995 8 C -0.126 4.126 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.063 3.937 12 N -0.890 5.890 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.098 3.902 18 N -0.464 5.464 19 C 0.038 3.962 20 C -0.245 4.245 21 C -0.069 4.069 22 S 0.092 5.908 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.342 0.658 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.002 0.998 32 H 0.261 0.739 33 H 0.168 0.832 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 3.239 11.150 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.046 3.954 4 H 0.108 0.892 5 N -0.303 5.303 6 C 0.105 3.895 7 H 0.023 0.977 8 C -0.185 4.185 9 C -0.555 4.555 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.181 4.181 18 N -0.176 5.176 19 C -0.113 4.113 20 C -0.366 4.366 21 C -0.128 4.128 22 S 0.347 5.653 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.032 4.023 10.311 16.349 hybrid contribution 1.137 -1.296 0.536 1.805 sum -10.895 2.727 10.848 15.614 Atomic orbital electron populations 1.21805 0.96115 1.01472 1.01553 1.22245 0.95974 0.97034 1.03298 1.20161 0.92755 0.93459 0.89022 0.89222 1.60607 1.02582 1.51896 1.15175 1.19162 0.95198 0.93507 0.81633 0.97737 1.21755 0.96291 0.97219 1.03189 1.21228 1.00709 1.40741 0.92789 0.92125 1.24897 0.97884 0.95439 0.95686 1.69887 1.37676 1.47508 0.97845 0.86520 0.84293 0.79098 0.77636 1.20753 1.21240 1.19835 1.27351 0.94845 0.97803 0.98150 1.66182 1.27754 1.25555 0.98144 1.21715 0.95409 0.95180 0.98977 1.25823 1.05410 1.07924 0.97483 1.20134 0.99346 0.97131 0.96186 1.83885 1.36139 1.41120 1.04125 0.93206 0.92572 0.92775 0.90212 0.91370 0.83911 0.94915 0.89926 0.97863 0.92929 0.81497 0.91110 0.90620 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.79 37.16 0.36 -1.69 16 2 C -0.14 -2.38 5.35 -26.73 -0.14 -2.52 16 3 C 0.16 2.96 2.36 -68.87 -0.16 2.80 16 4 H 0.09 1.68 7.08 -51.93 -0.37 1.32 16 5 N -0.67 -14.69 6.01 -102.18 -0.61 -15.30 16 6 C 0.21 5.32 2.40 -68.87 -0.17 5.15 16 7 H 0.01 0.13 7.15 -51.93 -0.37 -0.24 16 8 C -0.13 -3.15 9.17 37.16 0.34 -2.81 16 9 C -0.52 -14.12 8.59 -34.44 -0.30 -14.42 16 10 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 11 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 12 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 C 0.10 1.68 5.27 -13.46 -0.07 1.61 16 18 N -0.46 -8.14 10.51 -11.86 -0.12 -8.26 16 19 C 0.04 0.56 11.25 -19.18 -0.22 0.34 16 20 C -0.25 -3.16 6.60 -35.92 -0.24 -3.40 16 21 C -0.07 -0.61 10.42 36.00 0.38 -0.24 16 22 S 0.09 1.30 22.74 -107.50 -2.44 -1.14 16 23 H 0.05 0.66 6.88 -51.93 -0.36 0.31 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.41 7.42 -51.93 -0.39 1.03 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.34 7.57 7.97 -39.29 -0.31 7.25 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 31 H 0.00 0.05 7.40 -51.93 -0.38 -0.33 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.17 1.97 8.06 -52.48 -0.42 1.54 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 308.90 15.07 4.65 4.65 Total: -1.00 -29.11 308.90 -8.64 -37.75 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.41 Total: 4.12 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.31 Total: -13.54 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.11 Total: -48.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.44 Total: -1.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.11 -8.64 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382376721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.751 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds