Wall clock time and date at job start Mon Mar 30 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47415 * 2 1 4 4 H 1.09004 * 109.47047 * 305.36492 * 3 2 1 5 5 N 1.46904 * 109.47583 * 185.36336 * 3 2 1 6 6 C 1.46890 * 110.99972 * 85.70358 * 5 3 2 7 7 H 1.09004 * 109.47500 * 324.55188 * 6 5 3 8 8 C 1.52998 * 109.47290 * 84.55408 * 6 5 3 9 9 C 1.50698 * 109.47071 * 204.55393 * 6 5 3 10 10 H 1.07996 * 119.99998 * 359.97438 * 9 6 5 11 11 C 1.37881 * 119.99965 * 180.02562 * 9 6 5 12 12 N 1.31510 * 120.00232 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99834 * 179.97438 * 11 9 6 14 14 H 1.48510 * 109.47299 * 89.99616 * 13 11 9 15 15 H 1.48496 * 109.47238 * 209.99522 * 13 11 9 16 16 H 1.48498 * 109.47370 * 329.99551 * 13 11 9 17 17 C 1.50700 * 109.47240 * 65.36256 * 3 2 1 18 18 N 1.29024 * 124.91711 * 74.69513 * 17 3 2 19 19 C 1.31788 * 117.12465 * 179.81480 * 18 17 3 20 20 C 1.33642 * 114.49912 * 0.47718 * 19 18 17 21 21 C 1.50698 * 126.03600 * 179.78816 * 20 19 18 22 22 S 1.70987 * 124.91648 * 255.00501 * 17 3 2 23 23 H 1.08996 * 109.47144 * 303.72767 * 1 2 3 24 24 H 1.09007 * 109.46640 * 63.72688 * 1 2 3 25 25 H 1.08996 * 109.47074 * 183.71982 * 1 2 3 26 26 H 1.08998 * 109.47417 * 239.99711 * 2 1 3 27 27 H 1.09006 * 109.47053 * 119.99898 * 2 1 3 28 28 H 1.00899 * 110.99605 * 321.75103 * 5 3 2 29 29 H 1.08995 * 109.47476 * 59.99887 * 8 6 5 30 30 H 1.09002 * 109.47579 * 180.02562 * 8 6 5 31 31 H 1.08999 * 109.47179 * 299.99707 * 8 6 5 32 32 H 0.96998 * 120.00467 * 180.02562 * 12 11 9 33 33 H 1.08003 * 122.74745 * 180.22357 * 19 18 17 34 34 H 1.08999 * 109.47496 * 269.95468 * 21 20 19 35 35 H 1.09003 * 109.46914 * 29.95740 * 21 20 19 36 36 H 1.08999 * 109.46984 * 149.95501 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6004 1.9833 -0.8381 5 7 3.5034 1.4445 -0.1295 6 6 3.9071 1.3852 -1.5405 7 1 3.2052 0.7608 -2.0934 8 6 3.9081 2.7968 -2.1306 9 6 5.2908 0.7970 -1.6428 10 1 5.8177 0.4977 -0.7490 11 6 5.8845 0.6420 -2.8776 12 7 5.2430 1.0070 -3.9661 13 14 7.5999 -0.0864 -3.0043 14 1 7.5023 -1.5618 -3.1424 15 1 8.2905 0.4773 -4.1920 16 1 8.3707 0.2462 -1.7794 17 6 1.6491 2.1135 1.2915 18 7 2.2077 1.8979 2.4344 19 6 1.7448 2.5740 3.4665 20 6 0.7331 3.3990 3.1799 21 6 0.0091 4.2872 4.1586 22 16 0.3962 3.2654 1.4557 23 1 -0.3633 0.5706 0.8547 24 1 -0.3633 0.4549 -0.9216 25 1 -0.3633 -1.0255 0.0667 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9139 0.6874 0.3962 29 1 4.6100 3.4212 -1.5778 30 1 4.2072 2.7528 -3.1778 31 1 2.9073 3.2222 -2.0566 32 1 5.6605 0.8977 -4.8348 33 1 2.1472 2.4671 4.4630 34 1 -0.8360 3.7461 4.5841 35 1 0.6914 4.5809 4.9563 36 1 -0.3518 5.1773 3.6432 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382376721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:50 Heat of formation + Delta-G solvation = 10.581084 kcal Electronic energy + Delta-G solvation = -16766.983427 eV Core-core repulsion = 14183.603156 eV Total energy + Delta-G solvation = -2583.380270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74030 -38.45376 -35.63727 -33.46680 -33.08244 -30.35542 -28.32175 -27.27787 -25.89912 -24.63863 -22.82632 -21.82293 -19.71711 -19.10459 -18.34879 -16.94581 -16.48777 -16.07729 -15.62050 -15.41140 -15.28588 -14.62188 -14.35338 -13.92409 -13.64151 -13.55293 -13.47451 -13.39766 -13.00737 -12.79089 -12.53547 -12.39683 -12.25651 -12.20776 -12.00466 -11.97312 -11.73680 -10.93907 -10.58025 -10.43031 -10.07578 -9.60819 -9.03572 -8.13127 -6.26229 -0.17014 0.44348 0.85808 1.41899 1.43312 1.53935 1.98307 2.42231 3.15617 3.31313 3.64371 3.90762 4.00449 4.12081 4.27536 4.34083 4.45699 4.56029 4.76437 4.77113 4.85127 4.95359 5.02269 5.05937 5.10211 5.12950 5.19285 5.27177 5.41927 5.46458 5.67073 5.84296 6.21242 6.45641 6.72151 6.96466 6.97546 7.43629 8.92588 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.005173 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.765548 B = 5411.097698 C = 5594.586031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.163 3.837 4 H 0.081 0.919 5 N -0.675 5.675 6 C 0.220 3.780 7 H -0.018 1.018 8 C -0.114 4.114 9 C -0.536 4.536 10 H 0.054 0.946 11 C 0.017 3.983 12 N -0.915 5.915 13 Si 0.960 3.040 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.061 3.939 18 N -0.488 5.488 19 C 0.011 3.989 20 C -0.224 4.224 21 C -0.071 4.071 22 S 0.120 5.880 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.337 0.663 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.190 0.810 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.827 3.837 12.674 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.049 3.951 4 H 0.099 0.901 5 N -0.305 5.305 6 C 0.111 3.889 7 H 0.000 1.000 8 C -0.173 4.173 9 C -0.575 4.575 10 H 0.072 0.928 11 C -0.182 4.182 12 N -0.554 5.554 13 Si 0.786 3.214 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.217 4.217 18 N -0.202 5.202 19 C -0.139 4.139 20 C -0.345 4.345 21 C -0.130 4.130 22 S 0.375 5.625 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.207 0.793 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.003 4.619 11.844 18.185 hybrid contribution 1.341 -1.407 0.154 1.950 sum -11.662 3.212 11.998 17.038 Atomic orbital electron populations 1.21739 0.93585 1.02737 1.02049 1.22114 0.98157 0.95616 1.01936 1.20088 0.90350 0.94687 0.89998 0.90072 1.60517 1.05343 1.51685 1.12971 1.18926 0.93870 0.92811 0.83264 1.00048 1.21579 0.96990 0.97173 1.01524 1.21516 1.01863 1.41272 0.92826 0.92761 1.25655 1.01493 0.95724 0.95335 1.69999 1.39112 1.48084 0.98218 0.85527 0.79804 0.78531 0.77563 1.20007 1.20721 1.19679 1.26904 0.97265 1.00049 0.97484 1.66137 1.28632 1.26529 0.98920 1.22084 0.96539 0.95982 0.99292 1.26404 1.04137 1.06688 0.97271 1.20348 1.00008 0.96863 0.95751 1.83710 1.34247 1.39304 1.05250 0.92697 0.92011 0.91123 0.92266 0.91886 0.84479 0.95843 0.92040 0.95994 0.92769 0.79277 0.89138 0.88751 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.79 71.98 0.70 -3.06 16 2 C -0.14 -4.61 5.35 30.59 0.16 -4.45 16 3 C 0.16 6.09 2.36 44.17 0.10 6.20 16 4 H 0.08 3.11 7.08 -2.38 -0.02 3.09 16 5 N -0.67 -30.36 6.01 -477.18 -2.87 -33.23 16 6 C 0.22 11.34 2.40 44.17 0.11 11.44 16 7 H -0.02 -1.00 7.15 -2.38 -0.02 -1.01 16 8 C -0.11 -5.82 9.17 71.98 0.66 -5.16 16 9 C -0.54 -30.02 8.59 25.60 0.22 -29.80 16 10 H 0.05 3.03 7.62 -2.91 -0.02 3.01 16 11 C 0.02 0.97 5.30 84.66 0.45 1.42 16 12 N -0.91 -52.57 11.32 21.45 0.24 -52.33 16 13 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 C 0.06 2.08 5.27 88.52 0.47 2.55 16 18 N -0.49 -16.86 10.51 -191.43 -2.01 -18.87 16 19 C 0.01 0.30 11.25 83.66 0.94 1.24 16 20 C -0.22 -5.15 6.60 24.64 0.16 -4.98 16 21 C -0.07 -0.97 10.42 71.24 0.74 -0.23 16 22 S 0.12 3.18 22.74 -56.49 -1.28 1.90 16 23 H 0.05 1.39 6.88 -2.39 -0.02 1.37 16 24 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.19 7.42 -2.39 -0.02 2.17 16 27 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.34 15.48 7.97 -89.70 -0.72 14.76 16 29 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 31 H 0.02 0.98 7.40 -2.39 -0.02 0.96 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.19 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -62.90 308.90 1.18 -61.72 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.35 Total: 19.58 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.72 Total: -24.84 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.63 Total: -104.43 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.28 Total: 1.90 kcal Total: -62.90 1.18 -61.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382376721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.305 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds