Wall clock time and date at job start Mon Mar 30 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47632 * 2 1 4 4 N 1.46897 * 109.47637 * 180.02562 * 3 2 1 5 5 C 1.46899 * 111.00355 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47043 * 324.99919 * 5 4 3 7 7 C 1.53002 * 109.47394 * 84.99974 * 5 4 3 8 8 C 1.50703 * 109.47107 * 204.99940 * 5 4 3 9 9 N 1.30451 * 122.10140 * 314.70836 * 8 5 4 10 10 C 1.31871 * 115.68716 * 179.81101 * 9 8 5 11 11 C 1.39908 * 125.55172 * 180.19711 * 10 9 8 12 12 H 1.07996 * 120.00571 * 0.30093 * 11 10 9 13 13 C 1.40252 * 119.99788 * 180.29650 * 11 10 9 14 14 N 1.30689 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47308 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47197 * 119.99999 * 15 13 11 18 18 H 1.48500 * 109.47052 * 239.99966 * 15 13 11 19 19 S 1.76071 * 108.89005 * 0.43026 * 10 9 8 20 20 C 1.34856 * 122.10294 * 135.00193 * 8 5 4 21 21 C 1.50704 * 125.38115 * 359.95054 * 20 8 5 22 22 H 1.09008 * 109.47178 * 300.00287 * 1 2 3 23 23 H 1.09006 * 109.47209 * 59.99464 * 1 2 3 24 24 H 1.08995 * 109.47773 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47178 * 239.99713 * 2 1 3 26 26 H 1.08997 * 109.47049 * 120.00408 * 2 1 3 27 27 H 1.09006 * 109.47553 * 59.99846 * 3 2 1 28 28 H 1.09006 * 109.47261 * 300.00504 * 3 2 1 29 29 H 1.00898 * 111.00020 * 56.03964 * 4 3 2 30 30 H 1.09000 * 109.46986 * 300.00133 * 7 5 4 31 31 H 1.09002 * 109.47075 * 59.99404 * 7 5 4 32 32 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 33 33 H 0.97002 * 120.00374 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.46931 * 90.00773 * 21 20 8 35 35 H 1.09002 * 109.46752 * 210.00397 * 21 20 8 36 36 H 1.08999 * 109.47011 * 330.00628 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8138 0.0000 6 1 3.3796 3.4550 -0.5888 7 6 4.1016 3.3342 1.4373 8 6 5.4175 2.8216 -0.6011 9 7 6.3199 1.9374 -0.2759 10 6 7.4848 2.0601 -0.8816 11 6 8.5922 1.2265 -0.6919 12 1 8.5317 0.3964 -0.0036 13 6 9.7810 1.4686 -1.3956 14 7 9.8540 2.4726 -2.2290 15 14 11.2593 0.3551 -1.1428 16 1 10.9204 -0.7013 -0.1557 17 1 11.6303 -0.2762 -2.4348 18 1 12.4024 1.1571 -0.6374 19 16 7.4215 3.4482 -1.9631 20 6 5.8009 3.7464 -1.5045 21 6 4.9377 4.8655 -2.0278 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6768 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.8703 0.9163 -0.7821 30 1 3.1021 3.3285 1.8720 31 1 4.7574 2.6929 2.0261 32 1 4.4918 4.3519 1.4377 33 1 10.6763 2.6404 -2.7155 34 1 5.0566 5.7434 -1.3927 35 1 5.2386 5.1104 -3.0464 36 1 3.8938 4.5519 -2.0226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384113720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:45 Heat of formation + Delta-G solvation = -2.074067 kcal Electronic energy + Delta-G solvation = -16606.751750 eV Core-core repulsion = 14022.822711 eV Total energy + Delta-G solvation = -2583.929039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.35904 -36.14698 -34.27259 -33.02206 -31.05250 -29.10412 -27.89579 -25.24827 -24.13189 -22.20883 -21.08894 -20.94331 -17.91831 -17.11798 -16.05124 -15.38568 -14.96360 -14.73750 -14.03580 -13.88345 -13.37926 -13.00330 -12.80222 -12.16457 -12.12074 -11.92441 -11.79970 -11.75802 -11.70051 -11.53461 -11.20234 -11.08759 -10.86528 -10.66282 -10.57030 -10.39325 -10.22257 -9.58867 -9.14943 -7.84217 -7.63008 -7.60636 -7.09707 -7.05220 -4.67913 2.49987 2.94617 3.01144 3.02746 3.52753 3.70816 4.02754 4.09815 4.66604 5.10554 5.15245 5.20391 5.46105 5.63637 5.71024 5.77649 5.84190 5.91467 6.05044 6.13731 6.23404 6.28215 6.34607 6.36233 6.38661 6.43254 6.46583 6.76208 6.84546 6.92865 7.25047 7.55680 7.74337 7.94468 8.00894 8.34712 8.46764 9.79318 9.87706 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.005730 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.140048 B = 4885.500601 C = 5582.914673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.672 5.672 5 C 0.163 3.837 6 H 0.041 0.959 7 C -0.125 4.125 8 C 0.108 3.892 9 N -0.576 5.576 10 C 0.203 3.797 11 C -0.373 4.373 12 H 0.103 0.897 13 C 0.055 3.945 14 N -0.781 5.781 15 Si 0.940 3.060 16 H -0.256 1.256 17 H -0.270 1.270 18 H -0.270 1.270 19 S 0.104 5.896 20 C -0.437 4.437 21 C -0.035 4.035 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.346 0.654 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.297 0.703 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -0.556 0.612 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.304 5.304 5 C 0.052 3.948 6 H 0.059 0.941 7 C -0.184 4.184 8 C -0.033 4.033 9 N -0.297 5.297 10 C -0.050 4.050 11 C -0.415 4.415 12 H 0.121 0.879 13 C -0.167 4.167 14 N -0.410 5.410 15 Si 0.763 3.237 16 H -0.179 1.179 17 H -0.195 1.195 18 H -0.195 1.195 19 S 0.363 5.637 20 C -0.563 4.563 21 C -0.094 4.094 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.165 0.835 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.555 -0.424 0.799 6.617 hybrid contribution -0.406 -0.007 -0.558 0.690 sum -6.961 -0.430 0.241 6.978 Atomic orbital electron populations 1.21728 0.96070 1.01352 1.01528 1.21490 0.94955 0.96950 1.02612 1.22034 0.89206 0.96315 0.99661 1.60395 1.05133 1.14162 1.50747 1.19932 0.90985 0.88495 0.95424 0.94103 1.21649 1.00466 1.00119 0.96149 1.19469 0.95207 0.92962 0.95706 1.67262 1.00824 1.29623 1.31998 1.23929 0.94050 0.94355 0.92671 1.19031 0.92771 1.10153 1.19549 0.87888 1.26173 1.01303 0.95874 0.93399 1.68804 1.29181 1.24309 1.18706 0.85696 0.78661 0.79832 0.79495 1.17895 1.19463 1.19452 1.84183 1.02876 1.30022 1.46643 1.24745 1.05696 1.09805 1.16026 1.19637 0.96473 0.94784 0.98524 0.92827 0.93069 0.92837 0.92287 0.91136 0.91589 0.96228 0.83540 0.93902 0.91568 0.93280 0.89048 0.94179 0.93878 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.15 0.37 -1.17 16 2 C -0.12 -1.57 6.19 -26.74 -0.17 -1.73 16 3 C 0.06 0.85 5.48 -3.83 -0.02 0.83 16 4 N -0.67 -12.58 6.21 -107.95 -0.67 -13.25 16 5 C 0.16 3.27 2.87 -68.86 -0.20 3.07 16 6 H 0.04 0.79 5.87 -51.93 -0.31 0.48 16 7 C -0.13 -2.34 9.40 37.16 0.35 -1.99 16 8 C 0.11 2.60 5.26 -84.38 -0.44 2.16 16 9 N -0.58 -15.35 10.54 -9.33 -0.10 -15.45 16 10 C 0.20 5.53 7.14 -16.91 -0.12 5.41 16 11 C -0.37 -9.69 9.45 -38.20 -0.36 -10.05 16 12 H 0.10 2.61 7.85 -52.49 -0.41 2.20 16 13 C 0.05 1.29 5.50 -17.28 -0.10 1.19 16 14 N -0.78 -18.82 10.67 55.56 0.59 -18.23 16 15 Si 0.94 17.59 29.56 -169.99 -5.03 12.56 16 16 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 19 S 0.10 2.64 20.15 -107.50 -2.17 0.48 16 20 C -0.44 -10.44 6.38 -35.51 -0.23 -10.67 16 21 C -0.04 -0.70 9.98 36.01 0.36 -0.34 16 22 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.94 7.44 -51.93 -0.39 0.56 16 28 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 29 H 0.35 6.94 8.34 -39.29 -0.33 6.61 16 30 H 0.04 0.68 7.45 -51.93 -0.39 0.30 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.30 6.38 8.29 -40.82 -0.34 6.04 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.78 6.56 -51.93 -0.34 0.44 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -27.41 309.16 -8.78 -36.19 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.52 Total: 6.33 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.55 Total: -13.28 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.18 Total: -46.93 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.17 Total: 0.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.41 -8.78 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384113720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.111 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds