Wall clock time and date at job start Mon Mar 30 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47632 * 2 1 4 4 N 1.46897 * 109.47637 * 180.02562 * 3 2 1 5 5 C 1.46899 * 111.00355 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47043 * 324.99919 * 5 4 3 7 7 C 1.53002 * 109.47394 * 84.99974 * 5 4 3 8 8 C 1.50703 * 109.47107 * 204.99940 * 5 4 3 9 9 N 1.30451 * 122.10140 * 314.70836 * 8 5 4 10 10 C 1.31871 * 115.68716 * 179.81101 * 9 8 5 11 11 C 1.39908 * 125.55172 * 180.19711 * 10 9 8 12 12 H 1.07996 * 120.00571 * 0.30093 * 11 10 9 13 13 C 1.40252 * 119.99788 * 180.29650 * 11 10 9 14 14 N 1.30689 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47308 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47197 * 119.99999 * 15 13 11 18 18 H 1.48500 * 109.47052 * 239.99966 * 15 13 11 19 19 S 1.76071 * 108.89005 * 0.43026 * 10 9 8 20 20 C 1.34856 * 122.10294 * 135.00193 * 8 5 4 21 21 C 1.50704 * 125.38115 * 359.95054 * 20 8 5 22 22 H 1.09008 * 109.47178 * 300.00287 * 1 2 3 23 23 H 1.09006 * 109.47209 * 59.99464 * 1 2 3 24 24 H 1.08995 * 109.47773 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47178 * 239.99713 * 2 1 3 26 26 H 1.08997 * 109.47049 * 120.00408 * 2 1 3 27 27 H 1.09006 * 109.47553 * 59.99846 * 3 2 1 28 28 H 1.09006 * 109.47261 * 300.00504 * 3 2 1 29 29 H 1.00898 * 111.00020 * 56.03964 * 4 3 2 30 30 H 1.09000 * 109.46986 * 300.00133 * 7 5 4 31 31 H 1.09002 * 109.47075 * 59.99404 * 7 5 4 32 32 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 33 33 H 0.97002 * 120.00374 * 179.97438 * 14 13 11 34 34 H 1.09005 * 109.46931 * 90.00773 * 21 20 8 35 35 H 1.09002 * 109.46752 * 210.00397 * 21 20 8 36 36 H 1.08999 * 109.47011 * 330.00628 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0355 2.8138 0.0000 6 1 3.3796 3.4550 -0.5888 7 6 4.1016 3.3342 1.4373 8 6 5.4175 2.8216 -0.6011 9 7 6.3199 1.9374 -0.2759 10 6 7.4848 2.0601 -0.8816 11 6 8.5922 1.2265 -0.6919 12 1 8.5317 0.3964 -0.0036 13 6 9.7810 1.4686 -1.3956 14 7 9.8540 2.4726 -2.2290 15 14 11.2593 0.3551 -1.1428 16 1 10.9204 -0.7013 -0.1557 17 1 11.6303 -0.2762 -2.4348 18 1 12.4024 1.1571 -0.6374 19 16 7.4215 3.4482 -1.9631 20 6 5.8009 3.7464 -1.5045 21 6 4.9377 4.8655 -2.0278 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6768 1.9564 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.8703 0.9163 -0.7821 30 1 3.1021 3.3285 1.8720 31 1 4.7574 2.6929 2.0261 32 1 4.4918 4.3519 1.4377 33 1 10.6763 2.6404 -2.7155 34 1 5.0566 5.7434 -1.3927 35 1 5.2386 5.1104 -3.0464 36 1 3.8938 4.5519 -2.0226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384113720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:45 Heat of formation + Delta-G solvation = -19.051285 kcal Electronic energy + Delta-G solvation = -16607.487937 eV Core-core repulsion = 14022.822711 eV Total energy + Delta-G solvation = -2584.665226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12181 -37.60847 -36.04338 -34.38054 -32.71136 -30.50075 -29.74864 -26.65140 -25.67626 -23.93341 -22.69283 -22.15574 -19.69310 -19.00536 -17.77530 -16.78246 -16.64435 -16.12159 -15.57903 -15.30741 -14.94422 -14.36691 -14.15085 -13.91369 -13.57315 -13.50483 -13.35994 -13.23248 -13.08469 -13.02153 -12.71228 -12.40345 -12.36403 -12.09903 -11.96714 -11.80904 -11.56533 -11.30115 -10.95254 -9.60931 -9.55022 -9.25422 -9.04816 -8.85186 -6.62296 0.65519 1.39854 1.48152 1.57263 1.59602 2.05180 2.21326 2.30489 3.16502 3.34615 3.92754 4.11423 4.15128 4.24309 4.47001 4.59343 4.66319 4.68221 4.70160 4.73884 4.85137 4.88442 4.92522 4.95484 4.99830 5.16035 5.19244 5.29233 5.38694 5.40187 5.48259 5.80773 5.96834 6.27259 6.44658 6.46273 6.55697 7.92170 8.05374 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.005730 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.140048 B = 4885.500601 C = 5582.914673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.059 3.941 4 N -0.683 5.683 5 C 0.166 3.834 6 H 0.054 0.946 7 C -0.117 4.117 8 C 0.094 3.906 9 N -0.602 5.602 10 C 0.171 3.829 11 C -0.402 4.402 12 H 0.098 0.902 13 C 0.021 3.979 14 N -0.801 5.801 15 Si 1.016 2.984 16 H -0.257 1.257 17 H -0.257 1.257 18 H -0.258 1.258 19 S 0.078 5.922 20 C -0.447 4.447 21 C -0.031 4.031 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.334 0.666 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.309 0.691 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -0.618 0.611 8.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.070 4.070 4 N -0.314 5.314 5 C 0.054 3.946 6 H 0.072 0.928 7 C -0.176 4.176 8 C -0.046 4.046 9 N -0.324 5.324 10 C -0.082 4.082 11 C -0.445 4.445 12 H 0.116 0.884 13 C -0.199 4.199 14 N -0.430 5.430 15 Si 0.834 3.166 16 H -0.180 1.180 17 H -0.182 1.182 18 H -0.182 1.182 19 S 0.337 5.663 20 C -0.573 4.573 21 C -0.090 4.090 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.205 -0.455 0.795 7.263 hybrid contribution -0.238 0.034 -0.574 0.622 sum -7.443 -0.422 0.221 7.458 Atomic orbital electron populations 1.21684 0.93792 1.02398 1.02207 1.21459 0.96838 0.95450 1.01898 1.22140 0.86742 0.97825 1.00310 1.60424 1.07533 1.13227 1.50242 1.19978 0.88988 0.89617 0.95992 0.92791 1.21570 1.01606 0.99326 0.95056 1.20051 0.96548 0.92298 0.95676 1.67302 1.01302 1.30951 1.32893 1.24373 0.94855 0.95372 0.93554 1.19331 0.93989 1.10467 1.20704 0.88444 1.27148 1.03377 0.97109 0.92255 1.68843 1.30569 1.25028 1.18515 0.84616 0.74580 0.77632 0.79764 1.17991 1.18169 1.18216 1.84005 1.04965 1.30161 1.47212 1.25203 1.05169 1.10952 1.15962 1.19684 0.96636 0.93732 0.98907 0.92008 0.92505 0.91676 0.92937 0.91992 0.90623 0.95597 0.84886 0.90887 0.94183 0.93220 0.87745 0.92934 0.93188 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.88 6.19 30.59 0.19 -2.69 16 3 C 0.06 1.64 5.48 86.30 0.47 2.12 16 4 N -0.68 -25.26 6.21 -495.44 -3.08 -28.33 16 5 C 0.17 6.52 2.87 44.17 0.13 6.65 16 6 H 0.05 1.97 5.87 -2.39 -0.01 1.95 16 7 C -0.12 -4.26 9.40 71.98 0.68 -3.58 16 8 C 0.09 4.59 5.26 41.99 0.22 4.81 16 9 N -0.60 -33.07 10.54 -183.44 -1.93 -35.01 16 10 C 0.17 9.62 7.14 85.09 0.61 10.23 16 11 C -0.40 -21.52 9.45 23.16 0.22 -21.30 16 12 H 0.10 5.13 7.85 -2.91 -0.02 5.11 16 13 C 0.02 0.99 5.50 85.35 0.47 1.46 16 14 N -0.80 -38.71 10.67 21.88 0.23 -38.48 16 15 Si 1.02 35.38 29.56 68.60 2.03 37.41 16 16 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 17 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 18 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 19 S 0.08 4.07 20.15 -56.49 -1.14 2.93 16 20 C -0.45 -21.42 6.38 24.91 0.16 -21.27 16 21 C -0.03 -1.17 9.98 71.24 0.71 -0.46 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.97 7.44 -2.38 -0.02 1.96 16 28 H 0.03 0.70 8.06 -2.38 -0.02 0.68 16 29 H 0.33 13.58 8.34 -89.70 -0.75 12.83 16 30 H 0.07 2.17 7.45 -2.39 -0.02 2.15 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.31 13.13 8.29 -92.71 -0.77 12.36 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.09 6.56 -2.39 -0.02 2.08 16 Total: -1.00 -60.10 309.16 1.00 -59.10 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.32 Total: 28.31 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.57 Total: -25.93 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -4.78 Total: -101.82 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.14 Total: 2.93 kcal Total: -60.10 1.00 -59.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384113720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.050 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds