Wall clock time and date at job start Mon Mar 30 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 N 1.46900 * 109.46936 * 240.00470 * 2 1 3 5 5 C 1.46895 * 111.00083 * 85.00069 * 4 2 1 6 6 C 1.53001 * 109.47109 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47056 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47331 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99507 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47216 * 89.99792 * 13 11 9 15 15 H 1.48502 * 109.47421 * 210.00261 * 13 11 9 16 16 H 1.48508 * 109.46881 * 329.99990 * 13 11 9 17 17 C 1.50698 * 109.47406 * 120.00471 * 2 1 3 18 18 N 1.29024 * 124.91848 * 255.00564 * 17 2 1 19 19 C 1.31777 * 117.13032 * 180.02562 * 18 17 2 20 20 C 1.33647 * 114.49749 * 359.97438 * 19 18 17 21 21 S 1.70986 * 124.91681 * 75.31038 * 17 2 1 22 22 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46869 * 299.99393 * 1 2 3 24 24 H 1.08997 * 109.46886 * 59.99921 * 1 2 3 25 25 H 1.00900 * 111.00065 * 321.04004 * 4 2 1 26 26 H 1.09001 * 109.47237 * 299.99651 * 5 4 2 27 27 H 1.08996 * 109.47529 * 60.00002 * 5 4 2 28 28 H 1.09003 * 109.47102 * 299.99218 * 6 5 4 29 29 H 1.08997 * 109.47770 * 60.00063 * 6 5 4 30 30 H 1.08996 * 109.46848 * 299.99497 * 7 6 5 31 31 H 1.08993 * 109.47081 * 60.00141 * 7 6 5 32 32 H 1.09001 * 109.46737 * 299.99898 * 8 7 6 33 33 H 1.09004 * 109.47234 * 59.99701 * 8 7 6 34 34 H 0.97003 * 119.99700 * 180.02562 * 12 11 9 35 35 H 1.07995 * 122.75800 * 179.97438 * 19 18 17 36 36 H 1.08002 * 126.03488 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3468 6 6 2.5950 -0.5330 -3.5745 7 6 2.6598 0.4201 -4.7698 8 6 3.1729 -0.3354 -5.9973 9 6 3.2362 0.6030 -7.1746 10 1 2.9396 1.6351 -7.0590 11 6 3.6726 0.1442 -8.3994 12 7 4.0333 -1.1127 -8.5402 13 14 3.7503 1.3073 -9.8589 14 1 5.0854 1.9557 -9.9046 15 1 3.5276 0.5437 -11.1129 16 1 2.6994 2.3474 -9.7195 17 6 2.0324 -0.7105 1.2304 18 7 2.5367 -0.1281 2.2654 19 6 2.9289 -0.9007 3.2582 20 6 2.7447 -2.2079 3.0492 21 16 2.0235 -2.4057 1.4539 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.4496 -1.4979 -1.4101 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 3.5904 -0.9270 -3.3692 29 1 1.9183 -1.3563 -3.8032 30 1 1.6643 0.8137 -4.9749 31 1 3.3363 1.2436 -4.5415 32 1 4.1685 -0.7288 -5.7918 33 1 2.4968 -1.1594 -6.2257 34 1 4.3407 -1.4354 -9.4017 35 1 3.3635 -0.5099 4.1663 36 1 2.9980 -3.0028 3.7351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385213437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:06 Heat of formation + Delta-G solvation = 21.241948 kcal Electronic energy + Delta-G solvation = -15704.036637 eV Core-core repulsion = 13121.118657 eV Total energy + Delta-G solvation = -2582.917981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85080 -37.47351 -34.67171 -32.65421 -30.93338 -29.48478 -27.57695 -25.74127 -24.28881 -22.22897 -21.58117 -20.15931 -19.91156 -18.03866 -16.27829 -15.99131 -15.52820 -15.17164 -14.82671 -14.44720 -14.32961 -13.91291 -13.39122 -13.01661 -12.60420 -12.46463 -12.20487 -11.73030 -11.67983 -11.48950 -11.40976 -11.00358 -10.59000 -10.49908 -10.43094 -9.79161 -9.62689 -9.55028 -9.26819 -9.06164 -8.97068 -8.57259 -8.31520 -5.96760 -3.98928 0.56969 1.24232 1.65943 2.67428 3.33715 3.39728 3.43053 3.66206 4.33383 4.48964 4.75406 4.82782 4.98626 5.02668 5.30412 5.30891 5.38916 5.44701 5.47655 5.57160 5.77459 5.89576 5.93761 6.13866 6.21308 6.49358 6.81000 6.87065 6.98208 7.20276 7.24355 7.59218 7.72188 7.87929 8.04380 8.47126 9.08650 9.64934 11.14610 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.049927 B = 0.003011 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.689459 B = 9296.930415 C = 9493.894016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.155 3.845 3 H 0.108 0.892 4 N -0.685 5.685 5 C 0.062 3.938 6 C -0.116 4.116 7 C -0.109 4.109 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.073 3.927 18 N -0.482 5.482 19 C 0.039 3.961 20 C -0.274 4.274 21 S 0.142 5.858 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.343 0.657 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.173 0.827 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -2.108 22.778 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.041 3.959 3 H 0.126 0.874 4 N -0.317 5.317 5 C -0.066 4.066 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.205 4.205 18 N -0.197 5.197 19 C -0.112 4.112 20 C -0.414 4.414 21 S 0.396 5.604 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.190 0.810 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.116 -2.424 22.199 23.154 hybrid contribution -0.335 0.914 -0.142 0.984 sum -6.451 -1.510 22.057 23.031 Atomic orbital electron populations 1.22519 0.94963 1.02882 1.03444 1.19994 0.92936 0.97792 0.85207 0.87369 1.60497 1.57056 1.10308 1.03795 1.22132 0.99689 0.95298 0.89502 1.21650 1.01505 0.98804 0.93437 1.21589 1.00192 0.97838 0.95071 1.19089 0.96268 0.95369 0.90874 1.21290 1.43438 0.96473 0.94659 0.92768 1.25033 0.95525 0.95079 0.98903 1.69969 1.44744 1.14392 1.24457 0.86612 0.78384 0.80923 0.82187 1.20678 1.21248 1.19913 1.27103 1.00764 0.94361 0.98284 1.66228 1.13407 1.39135 1.00886 1.21762 1.01667 0.89035 0.98784 1.27117 1.11483 1.01492 1.01277 1.84016 1.56310 1.08806 1.11235 0.91965 0.91414 0.90889 0.83837 0.94889 0.90848 0.91547 0.92609 0.93598 0.93381 0.96606 0.96725 0.93052 0.80961 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.14 37.16 0.34 -1.23 16 2 C 0.15 1.68 3.10 -68.86 -0.21 1.47 16 3 H 0.11 1.25 7.80 -51.93 -0.40 0.85 16 4 N -0.69 -8.20 6.03 -107.96 -0.65 -8.85 16 5 C 0.06 0.83 5.48 -3.83 -0.02 0.81 16 6 C -0.12 -1.92 5.47 -26.73 -0.15 -2.07 16 7 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 8 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 9 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 10 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 17 C 0.07 0.85 6.32 -13.46 -0.09 0.77 16 18 N -0.48 -6.05 10.54 -11.86 -0.13 -6.18 16 19 C 0.04 0.40 11.35 -19.18 -0.22 0.18 16 20 C -0.27 -2.44 11.37 29.12 0.33 -2.11 16 21 S 0.14 1.40 22.96 -107.50 -2.47 -1.07 16 22 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 25 H 0.34 3.74 8.47 -39.29 -0.33 3.41 16 26 H 0.03 0.41 7.44 -51.93 -0.39 0.03 16 27 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -31.59 317.11 -9.15 -40.74 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.70 Total: -1.84 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.70 Total: -17.87 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.04 Total: -41.59 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.59 -9.15 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385213437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.984 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds