Wall clock time and date at job start Mon Mar 30 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 N 1.46900 * 109.46936 * 240.00470 * 2 1 3 5 5 C 1.46895 * 111.00083 * 85.00069 * 4 2 1 6 6 C 1.53001 * 109.47109 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47056 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47331 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99507 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00411 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99626 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47216 * 89.99792 * 13 11 9 15 15 H 1.48502 * 109.47421 * 210.00261 * 13 11 9 16 16 H 1.48508 * 109.46881 * 329.99990 * 13 11 9 17 17 C 1.50698 * 109.47406 * 120.00471 * 2 1 3 18 18 N 1.29024 * 124.91848 * 255.00564 * 17 2 1 19 19 C 1.31777 * 117.13032 * 180.02562 * 18 17 2 20 20 C 1.33647 * 114.49749 * 359.97438 * 19 18 17 21 21 S 1.70986 * 124.91681 * 75.31038 * 17 2 1 22 22 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46869 * 299.99393 * 1 2 3 24 24 H 1.08997 * 109.46886 * 59.99921 * 1 2 3 25 25 H 1.00900 * 111.00065 * 321.04004 * 4 2 1 26 26 H 1.09001 * 109.47237 * 299.99651 * 5 4 2 27 27 H 1.08996 * 109.47529 * 60.00002 * 5 4 2 28 28 H 1.09003 * 109.47102 * 299.99218 * 6 5 4 29 29 H 1.08997 * 109.47770 * 60.00063 * 6 5 4 30 30 H 1.08996 * 109.46848 * 299.99497 * 7 6 5 31 31 H 1.08993 * 109.47081 * 60.00141 * 7 6 5 32 32 H 1.09001 * 109.46737 * 299.99898 * 8 7 6 33 33 H 1.09004 * 109.47234 * 59.99701 * 8 7 6 34 34 H 0.97003 * 119.99700 * 180.02562 * 12 11 9 35 35 H 1.07995 * 122.75800 * 179.97438 * 19 18 17 36 36 H 1.08002 * 126.03488 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3468 6 6 2.5950 -0.5330 -3.5745 7 6 2.6598 0.4201 -4.7698 8 6 3.1729 -0.3354 -5.9973 9 6 3.2362 0.6030 -7.1746 10 1 2.9396 1.6351 -7.0590 11 6 3.6726 0.1442 -8.3994 12 7 4.0333 -1.1127 -8.5402 13 14 3.7503 1.3073 -9.8589 14 1 5.0854 1.9557 -9.9046 15 1 3.5276 0.5437 -11.1129 16 1 2.6994 2.3474 -9.7195 17 6 2.0324 -0.7105 1.2304 18 7 2.5367 -0.1281 2.2654 19 6 2.9289 -0.9007 3.2582 20 6 2.7447 -2.2079 3.0492 21 16 2.0235 -2.4057 1.4539 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.4496 -1.4979 -1.4101 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0463 -2.1182 28 1 3.5904 -0.9270 -3.3692 29 1 1.9183 -1.3563 -3.8032 30 1 1.6643 0.8137 -4.9749 31 1 3.3363 1.2436 -4.5415 32 1 4.1685 -0.7288 -5.7918 33 1 2.4968 -1.1594 -6.2257 34 1 4.3407 -1.4354 -9.4017 35 1 3.3635 -0.5099 4.1663 36 1 2.9980 -3.0028 3.7351 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385213437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:05 Heat of formation + Delta-G solvation = 0.784047 kcal Electronic energy + Delta-G solvation = -15704.923759 eV Core-core repulsion = 13121.118657 eV Total energy + Delta-G solvation = -2583.805102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64075 -38.47250 -36.31309 -34.47477 -32.24390 -30.43364 -29.04376 -26.67121 -25.88579 -23.36717 -22.76090 -21.76504 -20.82890 -18.86587 -18.38809 -16.98260 -16.55179 -16.51004 -16.04129 -15.81238 -15.20570 -15.04699 -14.45640 -14.30282 -13.90041 -13.78514 -13.48320 -13.17841 -12.92226 -12.80085 -12.47475 -12.30348 -12.28340 -12.17267 -12.09234 -11.35871 -11.28937 -11.01034 -10.60080 -10.54154 -10.32241 -9.79500 -9.49843 -8.18897 -6.30124 -0.19382 0.49897 0.90119 1.40308 1.41869 1.52920 1.89364 2.41692 2.80924 3.13973 3.48181 3.97307 4.05187 4.16033 4.26178 4.28194 4.42651 4.53090 4.59723 4.62347 4.73928 4.81005 4.88333 4.95014 5.12185 5.22710 5.26559 5.30210 5.38372 5.57135 5.80534 5.88052 5.93081 6.27216 6.33760 6.82202 6.87857 7.39199 8.92992 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.049927 B = 0.003011 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.689459 B = 9296.930415 C = 9493.894016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.157 3.843 3 H 0.098 0.902 4 N -0.691 5.691 5 C 0.075 3.925 6 C -0.106 4.106 7 C -0.097 4.097 8 C 0.023 3.977 9 C -0.545 4.545 10 H 0.060 0.940 11 C -0.003 4.003 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.051 3.949 18 N -0.510 5.510 19 C 0.019 3.981 20 C -0.264 4.264 21 S 0.153 5.847 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.349 0.651 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.049 0.951 32 H -0.013 1.013 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.195 0.805 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -1.580 23.505 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.044 3.956 3 H 0.116 0.884 4 N -0.323 5.323 5 C -0.054 4.054 6 C -0.144 4.144 7 C -0.135 4.135 8 C -0.015 4.015 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.227 4.227 18 N -0.225 5.225 19 C -0.132 4.132 20 C -0.403 4.403 21 S 0.406 5.594 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.169 0.831 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.006 0.994 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.211 0.789 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.793 -1.889 22.946 24.005 hybrid contribution -0.096 0.672 -0.308 0.745 sum -6.889 -1.217 22.638 23.694 Atomic orbital electron populations 1.22454 0.93322 1.03532 1.03780 1.19951 0.94167 0.97007 0.84493 0.88397 1.60383 1.57897 1.10418 1.03638 1.21878 1.00166 0.94799 0.88535 1.21462 1.01131 0.98288 0.93483 1.21393 1.00163 0.97868 0.94085 1.19023 0.94383 0.94953 0.93095 1.21762 1.43511 0.97145 0.95836 0.92173 1.26013 0.94925 0.96847 1.02267 1.70105 1.45516 1.16444 1.25438 0.85447 0.78875 0.78717 0.78011 1.19840 1.20694 1.18626 1.27181 1.01621 0.95426 0.98475 1.66232 1.14056 1.40518 1.01723 1.22164 1.02258 0.89540 0.99232 1.27506 1.09906 1.01900 1.00974 1.83937 1.56096 1.07418 1.11939 0.91156 0.91131 0.90432 0.83100 0.93434 0.91126 0.92878 0.92334 0.92751 0.93235 0.99424 0.99042 0.92800 0.78861 0.77863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.14 71.98 0.66 -2.09 16 2 C 0.16 3.28 3.10 44.17 0.14 3.41 16 3 H 0.10 2.22 7.80 -2.39 -0.02 2.20 16 4 N -0.69 -15.81 6.03 -495.46 -2.99 -18.80 16 5 C 0.07 1.91 5.48 86.30 0.47 2.38 16 6 C -0.11 -3.46 5.47 30.60 0.17 -3.29 16 7 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 8 C 0.02 1.21 4.97 29.85 0.15 1.36 16 9 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 11 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 12 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 13 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.05 1.14 6.32 88.52 0.56 1.70 16 18 N -0.51 -12.40 10.54 -191.44 -2.02 -14.42 16 19 C 0.02 0.35 11.35 83.66 0.95 1.30 16 20 C -0.26 -4.14 11.37 66.78 0.76 -3.38 16 21 S 0.15 2.77 22.96 -56.49 -1.30 1.48 16 22 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.17 7.45 -2.39 -0.02 1.16 16 25 H 0.35 7.16 8.47 -89.69 -0.76 6.40 16 26 H 0.05 1.09 7.44 -2.39 -0.02 1.07 16 27 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.20 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -68.04 317.11 1.00 -67.04 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.29 Total: 8.92 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 4.70 Total: -33.43 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -4.72 Total: -90.76 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.30 Total: 1.48 kcal Total: -68.04 1.00 -67.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385213437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.823 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds