Wall clock time and date at job start Mon Mar 30 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 111.00057 * 2 1 4 4 C 1.52999 * 109.47316 * 66.04199 * 3 2 1 5 5 C 1.53001 * 109.46975 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46975 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47245 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00238 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00004 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00212 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47303 * 59.99538 * 11 9 7 13 13 H 1.48496 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47212 * 299.99657 * 11 9 7 15 15 C 1.46896 * 111.00509 * 236.04225 * 2 1 3 16 16 C 1.50706 * 109.47020 * 293.95887 * 15 2 1 17 17 C 1.33635 * 122.75319 * 94.72961 * 16 15 2 18 18 S 1.76192 * 107.92524 * 179.97438 * 17 16 15 19 19 C 1.70976 * 90.28427 * 0.27803 * 18 17 16 20 20 N 1.29027 * 110.16712 * 359.83656 * 19 18 17 21 21 H 1.08993 * 109.47040 * 183.95299 * 1 2 3 22 22 H 1.09001 * 109.47545 * 303.96193 * 1 2 3 23 23 H 1.09008 * 109.47013 * 63.95937 * 1 2 3 24 24 H 1.08999 * 109.46849 * 186.04498 * 3 2 1 25 25 H 1.09002 * 109.46598 * 306.04244 * 3 2 1 26 26 H 1.09003 * 109.46535 * 300.00151 * 4 3 2 27 27 H 1.08994 * 109.47271 * 60.00125 * 4 3 2 28 28 H 1.09007 * 109.46636 * 299.99627 * 5 4 3 29 29 H 1.08994 * 109.47360 * 59.99762 * 5 4 3 30 30 H 1.09001 * 109.47213 * 300.00045 * 6 5 4 31 31 H 1.09007 * 109.47006 * 59.99617 * 6 5 4 32 32 H 0.96998 * 120.00098 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47401 * 173.95607 * 15 2 1 34 34 H 1.09002 * 109.46966 * 53.95348 * 15 2 1 35 35 H 1.08001 * 126.03202 * 0.03585 * 17 16 15 36 36 H 1.08001 * 124.91761 * 179.84059 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0576 1.3182 5 6 2.1792 3.4861 1.3178 6 6 1.8146 4.1724 2.6358 7 6 2.3547 5.5793 2.6358 8 1 2.9035 5.9470 1.7813 9 6 2.1491 6.3967 3.7269 10 7 1.4813 5.9488 4.7675 11 14 2.8179 8.1408 3.7266 12 1 2.2258 8.8979 2.5945 13 1 2.4642 8.8069 5.0058 14 1 4.2952 8.1045 3.5789 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2205 -0.9727 17 6 0.5524 -2.7656 -1.5317 18 16 0.5136 -4.4708 -1.0901 19 6 1.9552 -4.2795 -0.1909 20 7 2.3638 -3.0576 -0.2602 21 1 -0.3633 -1.0252 0.0708 22 1 -0.3634 0.5741 0.8523 23 1 -0.3633 0.4512 -0.9234 24 1 3.0797 1.3444 -0.1082 25 1 1.5611 1.9273 -0.8310 26 1 0.5471 2.0845 1.4263 27 1 2.0657 1.5017 2.1491 28 1 3.2635 3.4594 1.2095 29 1 1.7446 4.0417 0.4869 30 1 0.7303 4.1991 2.7437 31 1 2.2489 3.6169 3.4670 32 1 1.3363 6.5239 5.5350 33 1 3.0798 -0.6611 -1.1754 34 1 1.5612 -0.3873 -2.0627 35 1 -0.1718 -2.2517 -2.1465 36 1 2.4519 -5.0673 0.3559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385293401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:44 Heat of formation + Delta-G solvation = 34.141734 kcal Electronic energy + Delta-G solvation = -15861.882443 eV Core-core repulsion = 13279.523839 eV Total energy + Delta-G solvation = -2582.358604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15678 -37.52568 -34.38053 -32.37202 -30.97750 -28.50811 -27.85277 -25.68610 -24.79718 -22.94878 -20.72237 -20.03172 -19.68435 -18.18356 -16.20314 -16.07459 -15.81916 -15.28941 -14.60769 -14.37493 -14.23691 -13.92313 -13.52896 -13.06263 -12.50403 -12.44865 -12.11082 -11.72662 -11.62575 -11.46286 -11.17790 -10.92142 -10.48745 -10.45349 -10.31294 -9.84713 -9.68143 -9.55958 -9.25191 -9.12591 -8.96238 -8.29602 -8.26656 -5.94323 -3.96542 0.48176 1.15809 1.48542 2.56378 3.36430 3.40525 3.43140 3.96356 4.11902 4.50486 4.77722 4.94556 5.04275 5.20404 5.30653 5.39610 5.41017 5.48754 5.60627 5.74623 5.88239 5.91692 5.98897 6.19785 6.28040 6.56362 6.86250 7.01025 7.07597 7.11204 7.28111 7.56127 7.74776 7.91429 8.07100 8.49781 9.10893 9.67044 11.17051 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.064288 B = 0.002883 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.435928 B = 9708.837306 C = 9762.966871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.126 3.874 16 C 0.083 3.917 17 C -0.253 4.253 18 S 0.104 5.896 19 C 0.024 3.976 20 N -0.451 5.451 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.175 0.825 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -21.168 -14.075 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.069 4.069 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.005 4.005 16 C -0.050 4.050 17 C -0.393 4.393 18 S 0.356 5.644 19 C -0.275 4.275 20 N -0.164 5.164 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.042 0.958 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.192 0.808 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.774 -22.053 -13.377 25.941 hybrid contribution 0.203 2.140 -0.674 2.253 sum -2.571 -19.913 -14.051 24.506 Atomic orbital electron populations 1.22489 0.87591 1.01772 1.01037 1.61924 1.07905 1.14636 1.41434 1.22265 0.99909 0.86152 0.98571 1.21674 1.00819 0.96844 0.95786 1.21599 0.99399 0.92878 1.00834 1.19080 0.96649 0.94606 0.91200 1.21260 1.34770 0.98060 1.01782 0.92826 1.25033 0.95384 0.98457 0.95655 1.69959 1.41022 1.36512 1.06107 0.86672 0.79443 0.84810 0.77146 1.20306 1.21313 1.20252 1.20597 1.01434 0.86053 0.92385 1.20229 0.91749 0.97233 0.95795 1.26890 1.04599 0.96941 1.10824 1.84001 1.26210 1.08589 1.45620 1.28461 0.98008 0.97558 1.03491 1.66117 1.31762 1.01443 1.17125 0.91982 0.90411 0.95781 0.90805 0.94976 0.92570 0.91625 0.93420 0.93709 0.96781 0.96607 0.93006 0.88967 0.93214 0.80779 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.06 60.06 0.54 0.78 16 2 N -0.54 -7.35 4.75 -244.37 -1.16 -8.52 16 3 C 0.06 0.85 4.96 -3.82 -0.02 0.83 16 4 C -0.11 -2.02 5.15 -26.73 -0.14 -2.15 16 5 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 6 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.13 1.47 5.41 -4.98 -0.03 1.45 16 16 C 0.08 0.95 5.58 -84.22 -0.47 0.48 16 17 C -0.25 -2.33 9.86 29.12 0.29 -2.04 16 18 S 0.10 0.79 23.22 -107.50 -2.50 -1.70 16 19 C 0.02 0.21 12.23 51.58 0.63 0.84 16 20 N -0.45 -5.59 10.53 -11.89 -0.13 -5.72 16 21 H 0.06 0.72 6.45 -51.93 -0.34 0.38 16 22 H 0.08 1.04 6.30 -51.93 -0.33 0.71 16 23 H 0.02 0.27 8.14 -51.92 -0.42 -0.16 16 24 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 25 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.09 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -32.46 311.89 -8.83 -41.30 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -5.59 Total: -4.49 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 0.12 Total: -15.74 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.55 Total: -41.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.46 -8.83 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385293401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.440 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds