Wall clock time and date at job start Mon Mar 30 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 O 1.42893 * 109.46941 * 120.00472 * 2 1 3 5 5 C 1.42904 * 113.99964 * 150.00154 * 4 2 1 6 6 C 1.50696 * 109.47087 * 179.97438 * 5 4 2 7 7 N 1.29956 * 126.28956 * 89.97491 * 6 5 4 8 8 O 1.21297 * 110.25152 * 179.97438 * 7 6 5 9 9 C 1.33645 * 109.81173 * 359.97438 * 8 7 6 10 10 C 1.50695 * 126.55058 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47521 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47004 * 300.02436 * 10 9 8 13 13 C 1.52996 * 109.47310 * 60.02217 * 10 9 8 14 14 C 1.50702 * 109.47159 * 174.99934 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 N 1.31128 * 106.90006 * 0.22611 * 9 8 7 23 23 H 1.09000 * 109.47066 * 299.99655 * 1 2 3 24 24 H 1.09002 * 109.47209 * 59.99553 * 1 2 3 25 25 H 1.08995 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47066 * 240.00345 * 2 1 3 27 27 H 1.09000 * 109.46898 * 60.00242 * 3 2 1 28 28 H 1.09003 * 109.46985 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47636 * 300.00070 * 3 2 1 30 30 H 1.08993 * 109.47228 * 59.99817 * 5 4 2 31 31 H 1.09001 * 109.46621 * 299.99693 * 5 4 2 32 32 H 1.08999 * 109.46998 * 60.00229 * 12 10 9 33 33 H 1.09004 * 109.46896 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.46930 * 299.99977 * 12 10 9 35 35 H 1.09004 * 109.47066 * 55.00137 * 13 10 9 36 36 H 1.08994 * 109.47405 * 294.99967 * 13 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6699 -1.9980 2.2747 7 7 3.3818 -3.2146 2.6294 8 8 3.8528 -3.4564 3.7207 9 6 4.5062 -2.3848 4.1797 10 6 5.2309 -2.2712 5.4960 11 1 5.6645 -1.2753 5.5875 12 6 4.2454 -2.5056 6.6427 13 6 6.3437 -3.3195 5.5577 14 6 7.1460 -3.1267 6.8187 15 1 6.8879 -2.3359 7.5075 16 6 8.2059 -3.9639 7.0962 17 7 8.5200 -4.9271 6.2576 18 14 9.1956 -3.7298 8.6630 19 1 8.5939 -4.5379 9.7540 20 1 10.5953 -4.1705 8.4349 21 1 9.1846 -2.2951 9.0459 22 7 4.3917 -1.4492 3.2681 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 4.0200 -0.5875 0.7124 31 1 3.1808 -2.0707 0.1985 32 1 3.8119 -3.5015 6.5513 33 1 4.7695 -2.4231 7.5949 34 1 3.4526 -1.7588 6.5987 35 1 6.9960 -3.2083 4.6915 36 1 5.9039 -4.3167 5.5558 37 1 9.2659 -5.5158 6.4527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395445214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:17 Heat of formation + Delta-G solvation = -1.148356 kcal Electronic energy + Delta-G solvation = -18460.306794 eV Core-core repulsion = 15433.665026 eV Total energy + Delta-G solvation = -3026.641768 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.16402 -38.67603 -35.90989 -35.30851 -33.09391 -32.45782 -30.91746 -27.81335 -27.28388 -27.12628 -24.62978 -23.14351 -22.19140 -21.58736 -19.66206 -17.77371 -16.99059 -16.83967 -16.55612 -15.60035 -15.30684 -14.61695 -14.50435 -13.94405 -13.40098 -13.21823 -12.96375 -12.63231 -12.46775 -12.14785 -12.07656 -11.91591 -11.69468 -11.39351 -11.29839 -10.97937 -10.94300 -10.90297 -10.63628 -10.54041 -10.17847 -9.94148 -9.84452 -9.26142 -9.21390 -8.44720 -6.08711 -4.12603 1.54164 2.41773 3.28889 3.31792 3.36018 3.38188 3.47090 4.11001 4.30041 4.41386 4.64749 4.75797 4.90463 5.00308 5.16112 5.27822 5.32839 5.45892 5.53972 5.56944 5.57793 5.75340 5.84462 5.90177 5.96996 5.97467 6.24947 6.32044 6.56735 6.67787 6.83451 6.94855 7.47861 7.56210 7.86794 8.22901 8.55290 8.91727 9.51847 11.02641 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.003661 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.978161 B = 7646.300758 C = 7696.423145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.376 6.376 5 C 0.163 3.837 6 C 0.159 3.841 7 N -0.381 5.381 8 O 0.083 5.917 9 C 0.221 3.779 10 C -0.001 4.001 11 H 0.107 0.893 12 C -0.135 4.135 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.063 0.937 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 N -0.491 5.491 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 8.762 -10.497 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.294 6.294 5 C 0.085 3.915 6 C -0.114 4.114 7 N -0.090 5.090 8 O 0.023 5.977 9 C 0.001 3.999 10 C -0.022 4.022 11 H 0.125 0.875 12 C -0.193 4.193 13 C -0.009 4.009 14 C -0.559 4.559 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.225 5.225 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.663 8.506 -11.078 18.853 hybrid contribution 0.882 0.007 0.626 1.082 sum -11.780 8.514 -10.452 17.903 Atomic orbital electron populations 1.21863 0.93376 1.02856 1.02581 1.22127 0.95167 0.92549 0.87759 1.22314 1.01871 0.96529 1.02669 1.87995 1.35428 1.69944 1.36056 1.20301 0.86930 0.95335 0.88980 1.25201 0.98405 0.89038 0.98769 1.74570 1.18312 1.18350 0.97792 1.85287 1.50050 1.38646 1.23709 1.29631 0.91315 0.80107 0.98811 1.20377 0.95299 1.04794 0.81723 0.87547 1.21788 0.97571 1.01117 0.98871 1.19250 0.90880 0.92513 0.98301 1.21061 1.13746 1.15631 1.05478 0.91918 1.25006 0.97255 0.95085 0.96904 1.69968 1.28790 1.18146 1.36093 0.86537 0.79335 0.78531 0.83284 1.20557 1.21249 1.19720 1.71907 1.19503 1.29408 1.01655 0.91685 0.91101 0.91906 0.91925 0.91581 0.92180 0.91566 0.90118 0.90640 0.92281 0.89613 0.94017 0.95965 0.95216 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.56 37.16 0.36 -0.89 16 2 C 0.08 0.79 3.34 -26.73 -0.09 0.70 16 3 C -0.18 -1.51 9.53 37.16 0.35 -1.16 16 4 O -0.38 -5.22 9.97 -35.23 -0.35 -5.57 16 5 C 0.16 2.24 6.37 36.00 0.23 2.46 16 6 C 0.16 2.89 7.85 -156.36 -1.23 1.66 16 7 N -0.38 -7.39 12.16 30.90 0.38 -7.02 16 8 O 0.08 1.66 11.31 18.10 0.20 1.87 16 9 C 0.22 4.40 7.02 -13.06 -0.09 4.30 16 10 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 11 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 12 C -0.14 -2.36 8.99 37.16 0.33 -2.02 16 13 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 14 C -0.52 -13.63 8.41 -34.44 -0.29 -13.92 16 15 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 N -0.49 -9.67 11.55 -9.86 -0.11 -9.79 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 31 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.50 6.95 -51.93 -0.36 1.14 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -30.25 318.23 -6.01 -36.27 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.74 Total: -4.09 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.90 Total: -7.05 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 1.00 Total: -41.91 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.15 Total: -3.70 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.25 -6.01 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395445214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.117 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds