Wall clock time and date at job start Mon Mar 30 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 O 1.42893 * 109.46941 * 120.00472 * 2 1 3 5 5 C 1.42904 * 113.99964 * 150.00154 * 4 2 1 6 6 C 1.50696 * 109.47087 * 179.97438 * 5 4 2 7 7 N 1.29956 * 126.28956 * 89.97491 * 6 5 4 8 8 O 1.21297 * 110.25152 * 179.97438 * 7 6 5 9 9 C 1.33645 * 109.81173 * 359.97438 * 8 7 6 10 10 C 1.50695 * 126.55058 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47521 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.47004 * 300.02436 * 10 9 8 13 13 C 1.52996 * 109.47310 * 60.02217 * 10 9 8 14 14 C 1.50702 * 109.47159 * 174.99934 * 13 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 N 1.31128 * 106.90006 * 0.22611 * 9 8 7 23 23 H 1.09000 * 109.47066 * 299.99655 * 1 2 3 24 24 H 1.09002 * 109.47209 * 59.99553 * 1 2 3 25 25 H 1.08995 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47066 * 240.00345 * 2 1 3 27 27 H 1.09000 * 109.46898 * 60.00242 * 3 2 1 28 28 H 1.09003 * 109.46985 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47636 * 300.00070 * 3 2 1 30 30 H 1.08993 * 109.47228 * 59.99817 * 5 4 2 31 31 H 1.09001 * 109.46621 * 299.99693 * 5 4 2 32 32 H 1.08999 * 109.46998 * 60.00229 * 12 10 9 33 33 H 1.09004 * 109.46896 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.46930 * 299.99977 * 12 10 9 35 35 H 1.09004 * 109.47066 * 55.00137 * 13 10 9 36 36 H 1.08994 * 109.47405 * 294.99967 * 13 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6699 -1.9980 2.2747 7 7 3.3818 -3.2146 2.6294 8 8 3.8528 -3.4564 3.7207 9 6 4.5062 -2.3848 4.1797 10 6 5.2309 -2.2712 5.4960 11 1 5.6645 -1.2753 5.5875 12 6 4.2454 -2.5056 6.6427 13 6 6.3437 -3.3195 5.5577 14 6 7.1460 -3.1267 6.8187 15 1 6.8879 -2.3359 7.5075 16 6 8.2059 -3.9639 7.0962 17 7 8.5200 -4.9271 6.2576 18 14 9.1956 -3.7298 8.6630 19 1 8.5939 -4.5379 9.7540 20 1 10.5953 -4.1705 8.4349 21 1 9.1846 -2.2951 9.0459 22 7 4.3917 -1.4492 3.2681 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 4.0200 -0.5875 0.7124 31 1 3.1808 -2.0707 0.1985 32 1 3.8119 -3.5015 6.5513 33 1 4.7695 -2.4231 7.5949 34 1 3.4526 -1.7588 6.5987 35 1 6.9960 -3.2083 4.6915 36 1 5.9039 -4.3167 5.5558 37 1 9.2659 -5.5158 6.4527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395445214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:16 Heat of formation + Delta-G solvation = -20.917512 kcal Electronic energy + Delta-G solvation = -18461.164049 eV Core-core repulsion = 15433.665026 eV Total energy + Delta-G solvation = -3027.499023 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.67223 -39.60562 -37.56675 -36.79181 -34.61763 -33.76386 -32.45632 -29.02139 -28.85519 -28.03660 -26.30468 -24.74915 -23.84600 -22.33414 -21.22362 -19.22771 -18.64423 -18.35035 -17.83559 -16.67385 -16.49357 -16.41219 -16.00181 -15.17095 -14.70200 -14.42635 -14.19920 -13.90834 -13.73033 -13.49581 -13.07720 -13.07288 -12.87826 -12.77044 -12.71392 -12.64196 -12.42738 -12.26465 -12.20987 -11.93477 -11.73965 -11.59118 -11.24805 -10.87997 -10.74304 -10.53633 -8.16945 -6.27435 0.01977 0.98437 1.48047 1.48453 1.59329 1.78883 2.27475 2.46243 2.83491 3.11220 3.18695 3.77621 3.95027 4.04711 4.08661 4.14574 4.25080 4.27952 4.36675 4.50753 4.73669 4.74747 4.79785 4.80534 4.88918 4.91688 5.04097 5.07689 5.25828 5.31906 5.36511 5.41986 5.58736 5.80938 6.08891 6.17400 6.86537 7.02594 7.41816 8.95660 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.003661 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.978161 B = 7646.300758 C = 7696.423145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.402 6.402 5 C 0.162 3.838 6 C 0.163 3.837 7 N -0.394 5.394 8 O 0.066 5.934 9 C 0.215 3.785 10 C 0.008 3.992 11 H 0.114 0.886 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.079 0.921 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.258 1.258 22 N -0.501 5.501 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.066 0.934 35 H -0.011 1.011 36 H 0.006 0.994 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 10.292 -10.570 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.321 6.321 5 C 0.085 3.915 6 C -0.111 4.111 7 N -0.106 5.106 8 O 0.010 5.990 9 C -0.005 4.005 10 C -0.012 4.012 11 H 0.132 0.868 12 C -0.187 4.187 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.097 0.903 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.182 1.182 22 N -0.235 5.235 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.008 0.992 36 H 0.024 0.976 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.354 10.044 -11.133 20.079 hybrid contribution 1.035 -0.434 0.540 1.246 sum -12.319 9.610 -10.593 18.876 Atomic orbital electron populations 1.21893 0.92490 1.02728 1.03395 1.22460 0.95893 0.92956 0.87153 1.22303 1.01626 0.95920 1.03264 1.87960 1.35218 1.70458 1.38452 1.20525 0.87706 0.96233 0.87072 1.26035 0.96897 0.88615 0.99526 1.74563 1.19143 1.19219 0.97704 1.85269 1.50487 1.38923 1.24280 1.29596 0.91567 0.80362 0.98926 1.20189 0.94631 1.03413 0.82961 0.86783 1.21748 0.97556 1.01858 0.97561 1.19041 0.91637 0.92835 0.96635 1.21506 1.13560 1.15572 1.05968 0.90306 1.25951 0.98659 0.94806 1.00280 1.70116 1.29640 1.19424 1.38356 0.85426 0.77265 0.79150 0.79099 1.19783 1.21580 1.18208 1.71920 1.19945 1.29629 1.02033 0.92719 0.88429 0.92507 0.89940 0.92823 0.92539 0.89129 0.88457 0.88455 0.92535 0.89480 0.91481 0.99228 0.97581 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.56 71.98 0.69 -1.49 16 2 C 0.07 1.24 3.34 30.60 0.10 1.35 16 3 C -0.17 -2.61 9.53 71.98 0.69 -1.93 16 4 O -0.40 -10.56 9.97 -148.98 -1.49 -12.05 16 5 C 0.16 4.20 6.37 71.23 0.45 4.66 16 6 C 0.16 5.80 7.85 138.46 1.09 6.89 16 7 N -0.39 -15.27 12.16 -60.29 -0.73 -16.01 16 8 O 0.07 2.70 11.31 74.82 0.85 3.54 16 9 C 0.21 8.59 7.02 88.38 0.62 9.21 16 10 C 0.01 0.33 2.81 -11.54 -0.03 0.30 16 11 H 0.11 4.34 8.14 -2.39 -0.02 4.32 16 12 C -0.13 -4.35 8.99 71.98 0.65 -3.70 16 13 C 0.04 1.83 4.43 29.85 0.13 1.96 16 14 C -0.53 -27.60 8.41 25.60 0.22 -27.39 16 15 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.94 -55.36 13.29 21.45 0.28 -55.08 16 18 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 N -0.50 -19.51 11.55 -303.17 -3.50 -23.01 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.10 2.16 7.87 -2.39 -0.02 2.14 16 31 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.90 6.95 -2.38 -0.02 2.89 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -65.31 318.23 3.54 -61.77 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.04 Total: 6.24 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.06 Total: -9.63 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.95 Total: -94.10 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.64 Total: -8.51 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -65.31 3.54 -61.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395445214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.852 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds