Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 H 1.09003 * 109.47112 * 307.95508 * 3 2 1 5 5 C 1.50700 * 109.46930 * 187.95909 * 3 2 1 6 6 H 1.08000 * 119.99984 * 243.97993 * 5 3 2 7 7 C 1.37882 * 120.00152 * 63.98182 * 5 3 2 8 8 N 1.31516 * 119.99852 * 203.16072 * 7 5 3 9 9 Si 1.86795 * 119.99922 * 23.16082 * 7 5 3 10 10 H 1.48506 * 109.47273 * 95.90463 * 9 7 5 11 11 H 1.48501 * 109.47348 * 215.90810 * 9 7 5 12 12 H 1.48506 * 109.47280 * 335.90743 * 9 7 5 13 13 N 1.46891 * 109.47560 * 67.96151 * 3 2 1 14 14 C 1.46906 * 111.00360 * 45.19662 * 13 3 2 15 15 C 1.46910 * 110.99852 * 281.24799 * 13 3 2 16 16 C 1.50697 * 109.46950 * 199.16269 * 15 13 3 17 17 C 1.35137 * 127.24870 * 89.70931 * 16 15 13 18 18 C 1.37812 * 114.76168 * 179.85829 * 17 16 15 19 19 C 1.50698 * 121.55641 * 180.20531 * 18 17 16 20 20 N 1.30075 * 116.87912 * 0.45074 * 18 17 16 21 21 S 1.69602 * 107.15434 * 359.75746 * 20 18 17 22 22 H 1.08999 * 109.46746 * 36.41005 * 1 2 3 23 23 H 1.08994 * 109.47250 * 276.41268 * 1 2 3 24 24 H 1.08996 * 109.47028 * 156.40710 * 1 2 3 25 25 H 1.09000 * 109.46919 * 119.99562 * 2 1 3 26 26 H 1.08999 * 109.47163 * 239.99753 * 2 1 3 27 27 H 0.96998 * 119.99611 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46154 * 60.00420 * 14 13 3 29 29 H 1.08994 * 109.47274 * 180.02562 * 14 13 3 30 30 H 1.09002 * 109.47091 * 300.00948 * 14 13 3 31 31 H 1.08996 * 109.46782 * 319.16611 * 15 13 3 32 32 H 1.09002 * 109.46769 * 79.16459 * 15 13 3 33 33 H 1.08000 * 122.61839 * 0.04215 * 17 16 15 34 34 H 1.08994 * 109.47397 * 270.22911 * 19 18 17 35 35 H 1.08999 * 109.47331 * 30.23424 * 19 18 17 36 36 H 1.09007 * 109.46900 * 150.23232 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5652 1.9957 -0.8103 5 6 3.5341 1.4470 -0.1967 6 1 4.1805 1.8197 0.5841 7 6 4.0760 0.9754 -1.3736 8 7 5.3200 0.5497 -1.4006 9 14 3.0431 0.9411 -2.9296 10 1 3.3136 2.1621 -3.7305 11 1 3.3906 -0.2618 -3.7281 12 1 1.6036 0.8957 -2.5674 13 7 1.7133 2.0774 1.2837 14 6 2.0289 1.1857 2.4076 15 6 0.3050 2.4940 1.3217 16 6 0.1158 3.5273 2.4021 17 6 0.2302 4.8683 2.2804 18 6 -0.0019 5.5751 3.4405 19 6 0.0802 7.0794 3.4774 20 7 -0.2902 4.8827 4.5032 21 16 -0.2840 3.2478 4.0520 22 1 -0.3633 0.8271 -0.6100 23 1 -0.3633 0.1148 1.0212 24 1 -0.3633 -0.9417 -0.4113 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 5.7011 0.2176 -2.2285 28 1 3.0928 0.9488 2.3956 29 1 1.7770 1.6802 3.3457 30 1 1.4509 0.2662 2.3153 31 1 0.0262 2.9204 0.3581 32 1 -0.3241 1.6290 1.5320 33 1 0.4807 5.3489 1.3462 34 1 1.0992 7.3819 3.7186 35 1 -0.1975 7.4824 2.5035 36 1 -0.6018 7.4620 4.2368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404428903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = 49.559117 kcal Electronic energy + Delta-G solvation = -17037.926299 eV Core-core repulsion = 14456.236243 eV Total energy + Delta-G solvation = -2581.690056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07571 -37.94716 -33.29472 -31.97469 -30.80372 -29.54046 -28.03278 -26.93778 -24.19033 -22.59345 -21.16556 -19.36098 -19.21933 -17.71171 -16.77798 -15.77282 -14.93052 -14.56141 -14.44486 -14.22635 -13.77087 -13.17774 -12.86798 -12.74120 -12.40946 -12.21869 -12.18858 -12.02426 -11.76652 -11.49363 -11.22450 -10.87083 -10.81375 -10.67168 -10.35911 -10.18035 -9.86088 -9.71105 -9.40662 -9.21151 -8.40210 -8.31839 -7.39675 -6.16600 -4.03714 0.91247 1.70254 2.04803 2.62278 3.24390 3.34547 3.37046 4.38941 4.59442 4.86422 5.09752 5.18611 5.27725 5.35360 5.45170 5.49267 5.71863 5.75732 5.82188 5.85759 5.92774 6.05955 6.08616 6.18160 6.21811 6.44680 6.49532 6.66925 6.73863 6.83776 6.89778 7.17925 7.58556 7.84326 7.98874 8.59733 9.01643 9.52631 10.96289 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005937 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.768893 B = 4715.305910 C = 5000.018397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C 0.194 3.806 4 H 0.035 0.965 5 C -0.511 4.511 6 H 0.079 0.921 7 C 0.080 3.920 8 N -0.882 5.882 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.259 1.259 13 N -0.514 5.514 14 C 0.024 3.976 15 C 0.109 3.891 16 C -0.130 4.130 17 C -0.200 4.200 18 C 0.118 3.882 19 C -0.082 4.082 20 N -0.476 5.476 21 S 0.230 5.770 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.026 0.974 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 5.869 6.202 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.197 4.197 3 C 0.087 3.913 4 H 0.053 0.947 5 C -0.549 4.549 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.519 5.519 9 Si 0.682 3.318 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.183 1.183 13 N -0.238 5.238 14 C -0.124 4.124 15 C -0.021 4.021 16 C -0.260 4.260 17 C -0.235 4.235 18 C -0.059 4.059 19 C -0.144 4.144 20 N -0.298 5.298 21 S 0.384 5.616 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.173 0.827 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.316 5.303 8.105 15.669 hybrid contribution -0.391 0.063 -2.698 2.727 sum -12.707 5.366 5.407 14.816 Atomic orbital electron populations 1.22191 0.98576 1.00719 1.00250 1.22609 0.92745 1.02110 1.02251 1.19824 0.97422 0.88187 0.85909 0.94691 1.20773 0.89003 1.42231 1.02867 0.90263 1.24818 0.94761 0.93970 0.98724 1.70053 1.15297 1.39380 1.27131 0.87204 0.82234 0.77773 0.84637 1.20576 1.21388 1.18339 1.62180 1.14712 1.42153 1.04712 1.22463 1.02842 0.94301 0.92806 1.20947 0.92739 0.93885 0.94536 1.25608 1.00761 0.98732 1.00899 1.21094 1.08566 0.92864 1.00948 1.21463 0.96682 0.98776 0.89019 1.20524 1.03428 0.86959 1.03463 1.76622 1.26437 1.00202 1.26565 1.83909 1.64961 1.11404 1.01349 0.93236 0.93324 0.93899 0.91624 0.92309 0.92666 0.90116 0.93462 0.95523 0.89295 0.92526 0.82678 0.90015 0.90188 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.43 37.16 0.31 -2.33 16 2 C -0.16 -3.21 4.36 -26.73 -0.12 -3.32 16 3 C 0.19 4.29 1.43 -68.87 -0.10 4.19 16 4 H 0.04 0.80 5.77 -51.93 -0.30 0.50 16 5 C -0.51 -13.71 8.53 -34.44 -0.29 -14.01 16 6 H 0.08 2.36 7.80 -52.49 -0.41 1.96 16 7 C 0.08 2.22 5.18 -17.82 -0.09 2.13 16 8 N -0.88 -25.98 13.96 55.43 0.77 -25.20 16 9 Si 0.86 20.35 26.00 -169.99 -4.42 15.93 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.26 -5.78 5.99 56.52 0.34 -5.44 16 13 N -0.51 -10.09 4.56 -237.73 -1.08 -11.18 16 14 C 0.02 0.45 8.43 60.07 0.51 0.95 16 15 C 0.11 1.77 4.23 -4.97 -0.02 1.75 16 16 C -0.13 -1.99 5.62 -35.41 -0.20 -2.19 16 17 C -0.20 -2.88 9.91 -40.84 -0.40 -3.29 16 18 C 0.12 1.63 6.72 -83.49 -0.56 1.07 16 19 C -0.08 -0.80 10.26 36.00 0.37 -0.43 16 20 N -0.48 -7.32 12.05 32.02 0.39 -6.94 16 21 S 0.23 3.38 22.52 -107.50 -2.42 0.96 16 22 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 23 H 0.05 0.73 5.52 -51.93 -0.29 0.44 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.33 5.82 -51.93 -0.30 1.03 16 26 H 0.06 1.29 5.76 -51.93 -0.30 0.99 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.08 1.65 7.42 -51.93 -0.39 1.27 16 29 H 0.05 0.79 6.43 -51.93 -0.33 0.46 16 30 H 0.03 0.46 5.50 -51.93 -0.29 0.17 16 31 H 0.09 1.40 7.53 -51.93 -0.39 1.01 16 32 H 0.06 0.86 4.98 -51.93 -0.26 0.60 16 33 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -29.43 291.12 -7.92 -37.35 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.94 Total: 0.18 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.60 Total: -15.48 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.08 Total: -43.32 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.42 Total: 15.93 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.42 Total: 0.96 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.43 -7.92 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404428903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.909 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds