Wall clock time and date at job start Mon Mar 30 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 H 1.09003 * 109.47112 * 307.95508 * 3 2 1 5 5 C 1.50700 * 109.46930 * 187.95909 * 3 2 1 6 6 H 1.08000 * 119.99984 * 243.97993 * 5 3 2 7 7 C 1.37882 * 120.00152 * 63.98182 * 5 3 2 8 8 N 1.31516 * 119.99852 * 203.16072 * 7 5 3 9 9 Si 1.86795 * 119.99922 * 23.16082 * 7 5 3 10 10 H 1.48506 * 109.47273 * 95.90463 * 9 7 5 11 11 H 1.48501 * 109.47348 * 215.90810 * 9 7 5 12 12 H 1.48506 * 109.47280 * 335.90743 * 9 7 5 13 13 N 1.46891 * 109.47560 * 67.96151 * 3 2 1 14 14 C 1.46906 * 111.00360 * 45.19662 * 13 3 2 15 15 C 1.46910 * 110.99852 * 281.24799 * 13 3 2 16 16 C 1.50697 * 109.46950 * 199.16269 * 15 13 3 17 17 C 1.35137 * 127.24870 * 89.70931 * 16 15 13 18 18 C 1.37812 * 114.76168 * 179.85829 * 17 16 15 19 19 C 1.50698 * 121.55641 * 180.20531 * 18 17 16 20 20 N 1.30075 * 116.87912 * 0.45074 * 18 17 16 21 21 S 1.69602 * 107.15434 * 359.75746 * 20 18 17 22 22 H 1.08999 * 109.46746 * 36.41005 * 1 2 3 23 23 H 1.08994 * 109.47250 * 276.41268 * 1 2 3 24 24 H 1.08996 * 109.47028 * 156.40710 * 1 2 3 25 25 H 1.09000 * 109.46919 * 119.99562 * 2 1 3 26 26 H 1.08999 * 109.47163 * 239.99753 * 2 1 3 27 27 H 0.96998 * 119.99611 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46154 * 60.00420 * 14 13 3 29 29 H 1.08994 * 109.47274 * 180.02562 * 14 13 3 30 30 H 1.09002 * 109.47091 * 300.00948 * 14 13 3 31 31 H 1.08996 * 109.46782 * 319.16611 * 15 13 3 32 32 H 1.09002 * 109.46769 * 79.16459 * 15 13 3 33 33 H 1.08000 * 122.61839 * 0.04215 * 17 16 15 34 34 H 1.08994 * 109.47397 * 270.22911 * 19 18 17 35 35 H 1.08999 * 109.47331 * 30.23424 * 19 18 17 36 36 H 1.09007 * 109.46900 * 150.23232 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5652 1.9957 -0.8103 5 6 3.5341 1.4470 -0.1967 6 1 4.1805 1.8197 0.5841 7 6 4.0760 0.9754 -1.3736 8 7 5.3200 0.5497 -1.4006 9 14 3.0431 0.9411 -2.9296 10 1 3.3136 2.1621 -3.7305 11 1 3.3906 -0.2618 -3.7281 12 1 1.6036 0.8957 -2.5674 13 7 1.7133 2.0774 1.2837 14 6 2.0289 1.1857 2.4076 15 6 0.3050 2.4940 1.3217 16 6 0.1158 3.5273 2.4021 17 6 0.2302 4.8683 2.2804 18 6 -0.0019 5.5751 3.4405 19 6 0.0802 7.0794 3.4774 20 7 -0.2902 4.8827 4.5032 21 16 -0.2840 3.2478 4.0520 22 1 -0.3633 0.8271 -0.6100 23 1 -0.3633 0.1148 1.0212 24 1 -0.3633 -0.9417 -0.4113 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 5.7011 0.2176 -2.2285 28 1 3.0928 0.9488 2.3956 29 1 1.7770 1.6802 3.3457 30 1 1.4509 0.2662 2.3153 31 1 0.0262 2.9204 0.3581 32 1 -0.3241 1.6290 1.5320 33 1 0.4807 5.3489 1.3462 34 1 1.0992 7.3819 3.7186 35 1 -0.1975 7.4824 2.5035 36 1 -0.6018 7.4620 4.2368 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404428903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:13 Heat of formation + Delta-G solvation = 29.940713 kcal Electronic energy + Delta-G solvation = -17038.777017 eV Core-core repulsion = 14456.236243 eV Total energy + Delta-G solvation = -2582.540774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26837 -39.39421 -34.99838 -33.66929 -32.15435 -30.44025 -29.71763 -28.33970 -25.81387 -24.11256 -22.37622 -21.01861 -20.34544 -18.99355 -18.60420 -17.35029 -16.37641 -15.94598 -15.88228 -15.55745 -15.14824 -14.66755 -14.24108 -14.02884 -13.74504 -13.54630 -13.41526 -13.18664 -13.06524 -12.91925 -12.80371 -12.61169 -12.30314 -12.18123 -11.77648 -11.55128 -11.42126 -11.33642 -11.29740 -10.48061 -10.36060 -9.49822 -8.91543 -8.28876 -6.19649 -0.22802 0.57395 0.95127 1.35899 1.41529 1.49578 1.54173 2.38682 3.03779 3.29629 3.59582 4.06803 4.14615 4.31757 4.37009 4.39246 4.41439 4.50794 4.53670 4.63347 4.68181 4.77972 4.88685 4.95627 5.01817 5.09439 5.16189 5.21585 5.28681 5.30285 5.58311 5.67456 5.78586 6.05660 6.37754 6.69655 6.83041 7.40220 8.88240 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029350 B = 0.005937 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.768893 B = 4715.305910 C = 5000.018397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.157 4.157 3 C 0.200 3.800 4 H 0.039 0.961 5 C -0.513 4.513 6 H 0.031 0.969 7 C 0.025 3.975 8 N -0.935 5.935 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.230 1.230 13 N -0.533 5.533 14 C 0.032 3.968 15 C 0.114 3.886 16 C -0.145 4.145 17 C -0.201 4.201 18 C 0.117 3.883 19 C -0.082 4.082 20 N -0.498 5.498 21 S 0.228 5.772 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 6.639 5.665 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C 0.092 3.908 4 H 0.057 0.943 5 C -0.551 4.551 6 H 0.049 0.951 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.153 1.153 13 N -0.256 5.256 14 C -0.116 4.116 15 C -0.015 4.015 16 C -0.275 4.275 17 C -0.236 4.236 18 C -0.060 4.060 19 C -0.143 4.143 20 N -0.321 5.321 21 S 0.383 5.617 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.108 6.079 7.592 17.968 hybrid contribution 0.535 -0.098 -2.407 2.467 sum -14.574 5.980 5.185 16.584 Atomic orbital electron populations 1.22107 0.94982 1.02126 1.01785 1.22471 0.95897 1.00111 1.01130 1.19612 0.94092 0.89747 0.87377 0.94314 1.21022 0.91482 1.41088 1.01533 0.95103 1.25640 0.95928 0.93708 1.02117 1.70191 1.17708 1.41515 1.28001 0.86140 0.81984 0.77464 0.79866 1.20445 1.21555 1.15254 1.61985 1.17690 1.42205 1.03720 1.22345 1.00947 0.95077 0.93274 1.20926 0.90503 0.94665 0.95441 1.25579 1.01911 0.99044 1.01012 1.21387 1.07693 0.92739 1.01781 1.21996 0.95201 1.00563 0.88266 1.20686 1.04182 0.84254 1.05183 1.76652 1.27478 1.00486 1.27435 1.83827 1.65243 1.11631 1.01039 0.92374 0.91634 0.92125 0.92335 0.94071 0.92675 0.93466 0.91921 0.94102 0.88440 0.90950 0.81326 0.89201 0.87868 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.43 71.98 0.61 -3.85 16 2 C -0.16 -6.09 4.36 30.60 0.13 -5.96 16 3 C 0.20 8.65 1.43 44.17 0.06 8.71 16 4 H 0.04 1.67 5.77 -2.39 -0.01 1.65 16 5 C -0.51 -28.27 8.53 25.60 0.22 -28.05 16 6 H 0.03 1.94 7.80 -2.91 -0.02 1.92 16 7 C 0.02 1.39 5.18 84.66 0.44 1.83 16 8 N -0.93 -57.05 13.96 21.45 0.30 -56.75 16 9 Si 0.92 41.81 26.00 68.60 1.78 43.60 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.23 -9.25 5.99 99.48 0.60 -8.66 16 13 N -0.53 -20.38 4.56 -906.03 -4.13 -24.51 16 14 C 0.03 1.17 8.43 127.69 1.08 2.24 16 15 C 0.11 3.40 4.23 85.55 0.36 3.76 16 16 C -0.15 -4.15 5.62 24.97 0.14 -4.01 16 17 C -0.20 -5.32 9.91 21.45 0.21 -5.11 16 18 C 0.12 2.97 6.72 42.72 0.29 3.26 16 19 C -0.08 -1.37 10.26 71.24 0.73 -0.64 16 20 N -0.50 -14.50 12.05 -52.60 -0.63 -15.13 16 21 S 0.23 6.34 22.52 -56.49 -1.27 5.07 16 22 H 0.06 1.61 7.31 -2.39 -0.02 1.59 16 23 H 0.06 1.69 5.52 -2.39 -0.01 1.67 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.32 5.82 -2.39 -0.01 2.31 16 26 H 0.04 1.73 5.76 -2.39 -0.01 1.71 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.05 2.01 7.42 -2.39 -0.02 1.99 16 29 H 0.06 2.06 6.43 -2.39 -0.02 2.05 16 30 H 0.04 1.36 5.50 -2.39 -0.01 1.34 16 31 H 0.10 2.75 7.53 -2.39 -0.02 2.73 16 32 H 0.07 1.94 4.98 -2.39 -0.01 1.92 16 33 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -65.15 291.12 1.28 -63.86 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.97 Total: 11.67 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.27 Total: -27.82 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.47 Total: -96.39 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.78 Total: 43.60 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.27 Total: 5.07 kcal Total: -65.15 1.28 -63.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404428903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.804 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds