Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 H 1.08998 * 109.47030 * 305.53215 * 3 2 1 5 5 N 1.46907 * 109.46629 * 65.52945 * 3 2 1 6 6 C 1.46897 * 110.99405 * 207.68334 * 5 3 2 7 7 H 1.09005 * 109.47758 * 326.20480 * 6 5 3 8 8 C 1.53000 * 109.47488 * 86.21158 * 6 5 3 9 9 C 1.53006 * 109.46811 * 206.20990 * 6 5 3 10 10 C 1.50692 * 109.47364 * 65.00161 * 9 6 5 11 11 H 1.08007 * 120.00282 * 359.97438 * 10 9 6 12 12 C 1.37871 * 120.00313 * 180.27918 * 10 9 6 13 13 N 1.31519 * 120.00005 * 359.72134 * 12 10 9 14 14 Si 1.86800 * 120.00366 * 179.72077 * 12 10 9 15 15 H 1.48504 * 109.46938 * 90.00047 * 14 12 10 16 16 H 1.48499 * 109.47257 * 209.99860 * 14 12 10 17 17 H 1.48495 * 109.47057 * 329.99914 * 14 12 10 18 18 C 1.50699 * 109.47109 * 185.52959 * 3 2 1 19 19 N 1.29033 * 124.91363 * 284.69690 * 18 3 2 20 20 C 1.31781 * 117.12250 * 179.81742 * 19 18 3 21 21 C 1.33647 * 114.50033 * 0.47113 * 20 19 18 22 22 S 1.70972 * 124.91949 * 105.00484 * 18 3 2 23 23 H 1.08998 * 109.46932 * 300.08843 * 1 2 3 24 24 H 1.08999 * 109.47138 * 60.09099 * 1 2 3 25 25 H 1.09001 * 109.47454 * 180.08785 * 1 2 3 26 26 H 1.09004 * 109.47263 * 240.00556 * 2 1 3 27 27 H 1.08997 * 109.47755 * 120.00356 * 2 1 3 28 28 H 1.00889 * 110.99881 * 331.63381 * 5 3 2 29 29 H 1.09001 * 109.47218 * 184.08393 * 8 6 5 30 30 H 1.09003 * 109.46812 * 304.07755 * 8 6 5 31 31 H 1.08999 * 109.47242 * 64.07650 * 8 6 5 32 32 H 1.09007 * 109.47012 * 304.99834 * 9 6 5 33 33 H 1.09006 * 109.47145 * 185.00313 * 9 6 5 34 34 H 0.97001 * 120.00324 * 180.02562 * 13 12 10 35 35 H 1.08001 * 122.75087 * 180.22910 * 20 19 18 36 36 H 1.08001 * 126.03432 * 179.71868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9841 -0.8363 5 7 1.6623 2.0953 1.2607 6 6 1.5200 3.5462 1.0800 7 1 2.2406 3.8926 0.3391 8 6 0.1024 3.8639 0.6001 9 6 1.7780 4.2537 2.4119 10 6 3.2120 4.0420 2.8237 11 1 3.8733 3.4606 2.1983 12 6 3.6783 4.5852 4.0020 13 7 2.8730 5.2927 4.7640 14 14 5.4539 4.3162 4.5163 15 1 6.2987 5.4078 3.9684 16 1 5.5453 4.3160 5.9985 17 1 5.9291 3.0112 3.9909 18 6 3.5408 1.4447 -0.1369 19 7 4.3688 1.1445 0.8061 20 6 5.6533 1.1937 0.5159 21 6 5.9242 1.5650 -0.7391 22 16 4.3929 1.8523 -1.5620 23 1 -0.3633 0.5152 0.8892 24 1 -0.3633 0.5124 -0.8908 25 1 -0.3634 -1.0277 0.0016 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.8170 1.6932 1.6370 29 1 0.0183 4.9314 0.3966 30 1 -0.1070 3.3029 -0.3108 31 1 -0.6140 3.5835 1.3722 32 1 1.1164 3.8437 3.1752 33 1 1.5859 5.3208 2.2997 34 1 3.2011 5.6752 5.5928 35 1 6.4241 0.9573 1.2345 36 1 6.9079 1.6708 -1.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411516315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = 35.531050 kcal Electronic energy + Delta-G solvation = -17231.033207 eV Core-core repulsion = 14648.734849 eV Total energy + Delta-G solvation = -2582.298359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38451 -37.33879 -34.11883 -32.11777 -30.40858 -28.83100 -27.18938 -26.31877 -23.70665 -22.90062 -21.30879 -19.75397 -19.00222 -17.68073 -16.13021 -15.40935 -15.25228 -14.84110 -14.28883 -14.03043 -13.69464 -13.36922 -13.25593 -12.69505 -12.57309 -12.07860 -11.73135 -11.51642 -11.41103 -11.31224 -11.22187 -10.82788 -10.79319 -10.46043 -10.34578 -9.99659 -9.26555 -9.04663 -8.99800 -8.83348 -8.52836 -8.14700 -7.58826 -5.77105 -3.72293 1.09464 1.70613 2.07954 3.34342 3.45026 3.50895 3.58756 4.53226 4.67124 4.74038 5.06651 5.12721 5.22780 5.42425 5.60610 5.60877 5.65593 5.74736 5.78102 5.84654 5.92100 5.95133 6.02477 6.18871 6.32309 6.45969 6.54934 6.63538 7.06462 7.56860 7.74798 8.04031 8.13755 8.25930 8.31287 8.72287 9.34504 9.88494 11.35475 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.009309 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.249345 B = 3007.052995 C = 4129.057169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.164 3.836 4 H 0.056 0.944 5 N -0.643 5.643 6 C 0.089 3.911 7 H 0.059 0.941 8 C -0.180 4.180 9 C 0.035 3.965 10 C -0.477 4.477 11 H 0.064 0.936 12 C 0.048 3.952 13 N -0.908 5.908 14 Si 0.884 3.116 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.272 1.272 18 C 0.086 3.914 19 N -0.429 5.429 20 C 0.046 3.954 21 C -0.268 4.268 22 S 0.068 5.932 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.339 0.661 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.015 0.985 34 H 0.255 0.745 35 H 0.170 0.830 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 -9.483 -13.672 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.049 3.951 4 H 0.074 0.926 5 N -0.276 5.276 6 C -0.021 4.021 7 H 0.078 0.922 8 C -0.240 4.240 9 C -0.002 4.002 10 C -0.516 4.516 11 H 0.082 0.918 12 C -0.150 4.150 13 N -0.550 5.550 14 Si 0.713 3.287 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.197 1.197 18 C -0.195 4.195 19 N -0.141 5.141 20 C -0.105 4.105 21 C -0.407 4.407 22 S 0.321 5.679 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.161 0.839 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.187 0.813 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.102 -9.186 -13.741 16.565 hybrid contribution 1.082 -0.036 0.584 1.230 sum -0.020 -9.222 -13.157 16.067 Atomic orbital electron populations 1.21829 0.95346 1.01933 1.02010 1.21678 0.95800 0.95136 1.03264 1.20003 0.85609 0.95530 0.93938 0.92607 1.60295 1.40160 1.03765 1.23375 1.21874 0.92664 0.86673 1.00854 0.92234 1.22580 0.99883 1.01652 0.99844 1.19094 0.97487 0.93969 0.89675 1.21215 0.95706 1.29643 1.05045 0.91809 1.24967 0.97021 0.96045 0.96967 1.69969 1.34969 1.36454 1.13611 0.86695 0.86225 0.78418 0.77337 1.21384 1.21696 1.19713 1.27291 1.00940 1.00686 0.90536 1.66161 1.01326 1.15927 1.30683 1.21939 0.93133 1.00673 0.94789 1.26898 1.01521 1.13247 0.99035 1.83753 0.99513 1.65410 1.19207 0.92072 0.92855 0.92281 0.91705 0.90011 0.83882 0.92463 0.94379 0.92779 0.96481 0.96636 0.93584 0.81345 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.76 37.16 0.36 -1.25 16 2 C -0.12 -1.52 5.48 -26.73 -0.15 -1.66 16 3 C 0.16 2.55 2.31 -68.86 -0.16 2.39 16 4 H 0.06 0.81 7.19 -51.93 -0.37 0.44 16 5 N -0.64 -12.00 5.74 -100.95 -0.58 -12.58 16 6 C 0.09 1.80 2.33 -67.71 -0.16 1.64 16 7 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 8 C -0.18 -2.96 9.15 37.16 0.34 -2.62 16 9 C 0.04 0.91 4.65 -27.88 -0.13 0.78 16 10 C -0.48 -13.85 8.84 -34.45 -0.30 -14.16 16 11 H 0.06 1.87 7.73 -52.48 -0.41 1.46 16 12 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 13 N -0.91 -28.32 13.29 55.43 0.74 -27.58 16 14 Si 0.88 23.15 29.54 -169.99 -5.02 18.13 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 18 C 0.09 1.48 6.05 -13.45 -0.08 1.40 16 19 N -0.43 -8.36 10.49 -11.86 -0.12 -8.48 16 20 C 0.05 0.78 11.35 -19.18 -0.22 0.56 16 21 C -0.27 -3.86 11.37 29.12 0.33 -3.53 16 22 S 0.07 0.98 23.18 -107.50 -2.49 -1.52 16 23 H 0.06 0.68 6.46 -51.93 -0.34 0.34 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.34 5.80 6.22 -39.30 -0.24 5.56 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.53 7.52 -51.93 -0.39 0.14 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.25 7.58 8.31 -40.82 -0.34 7.25 16 35 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 36 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -32.80 312.71 -8.54 -41.34 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.51 Total: 1.07 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.26 Total: -15.09 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.03 Total: -48.65 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.80 -8.54 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411516315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.869 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds