Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39896 * 109.50433 * 2 1 4 4 C 1.53120 * 109.50067 * 239.91722 * 2 1 3 5 5 C 1.53121 * 109.15963 * 182.40588 * 4 2 1 6 6 C 1.53035 * 109.27790 * 57.65497 * 5 4 2 7 7 N 1.46846 * 109.52448 * 300.81797 * 6 5 4 8 8 C 1.46904 * 111.00038 * 185.83806 * 7 6 5 9 9 C 1.52996 * 109.46858 * 66.04740 * 8 7 6 10 10 H 1.09000 * 109.47753 * 305.00128 * 9 8 7 11 11 C 1.47204 * 109.47042 * 64.99895 * 9 8 7 12 12 N 5.45212 * 145.73245 * 61.16928 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99851 * 9 8 7 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46847 * 111.19512 * 61.74830 * 7 6 5 23 23 H 1.09000 * 109.46967 * 180.08202 * 1 2 3 24 24 H 1.09006 * 109.46758 * 300.08142 * 1 2 3 25 25 H 1.08997 * 109.47431 * 60.07788 * 1 2 3 26 26 H 1.09003 * 109.51921 * 62.50431 * 4 2 1 27 27 H 1.08991 * 109.57619 * 302.34285 * 4 2 1 28 28 H 1.09003 * 109.50241 * 297.71566 * 5 4 2 29 29 H 1.09001 * 109.50279 * 177.59937 * 5 4 2 30 30 H 1.09008 * 109.45907 * 180.80709 * 6 5 4 31 31 H 1.08999 * 109.45460 * 60.83560 * 6 5 4 32 32 H 1.08997 * 109.46933 * 306.04900 * 8 7 6 33 33 H 1.08996 * 109.47325 * 186.05042 * 8 7 6 34 34 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 35 35 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.46996 * 58.27027 * 22 7 6 38 38 H 1.09003 * 109.46358 * 178.24359 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9971 1.3187 0.0000 4 6 2.0411 -0.7235 -1.2490 5 6 3.5711 -0.7717 -1.2110 6 6 4.0229 -1.4731 0.0719 7 7 3.5093 -0.7425 1.2376 8 6 4.0373 -1.3067 2.4870 9 6 5.5487 -1.0781 2.5511 10 1 6.0167 -1.4892 1.6567 11 6 5.8236 0.3659 2.6291 12 7 6.0357 1.4804 2.6893 13 6 6.1175 -1.7731 3.7897 14 6 7.6197 -1.6526 3.7880 15 1 8.1188 -1.1320 2.9840 16 6 8.3566 -2.2017 4.8160 17 7 7.7488 -2.8353 5.7951 18 14 10.2180 -2.0456 4.8177 19 1 10.6101 -0.8041 5.5319 20 1 10.8126 -3.2204 5.5044 21 1 10.7114 -1.9883 3.4182 22 6 2.0410 -0.7239 1.2479 23 1 -0.3633 -1.0277 0.0015 24 1 -0.3633 0.5151 0.8893 25 1 -0.3634 0.5126 -0.8906 26 1 1.7156 -0.1864 -2.1398 27 1 1.6452 -1.7387 -1.2706 28 1 3.9678 0.2435 -1.2297 29 1 3.9394 -1.3229 -2.0762 30 1 5.1121 -1.4963 0.1089 31 1 3.6373 -2.4926 0.0834 32 1 3.8299 -2.3763 2.5188 33 1 3.5596 -0.8186 3.3365 34 1 5.8375 -2.8265 3.7761 35 1 5.7164 -1.3022 4.6871 36 1 8.2673 -3.2219 6.5181 37 1 1.6647 -1.7468 1.2539 38 1 1.6906 -0.2029 2.1389 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451114287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = -60.006454 kcal Electronic energy + Delta-G solvation = -19113.806407 eV Core-core repulsion = 16096.985149 eV Total energy + Delta-G solvation = -3016.821257 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.47997 -39.98924 -37.87219 -35.77330 -34.86730 -33.04052 -32.67477 -28.81429 -27.60416 -25.93273 -23.76247 -23.64799 -22.35705 -20.58241 -18.54631 -18.18071 -17.18367 -16.80027 -16.42932 -16.28387 -15.80672 -15.54072 -15.34021 -14.71603 -14.61398 -14.31344 -13.91313 -13.75270 -13.43257 -13.34124 -13.21958 -13.02728 -12.95411 -12.90195 -12.68283 -12.50563 -12.42627 -12.23402 -11.89514 -11.78019 -11.42956 -11.36113 -11.06845 -10.92445 -10.55396 -9.19534 -8.19655 -6.27695 1.39808 1.42419 1.51340 2.05491 2.13919 2.41448 2.84340 3.15915 3.34055 3.53581 3.70214 3.78436 3.89058 4.06008 4.20783 4.33410 4.37661 4.54105 4.60364 4.64778 4.70868 4.78001 4.79669 4.81288 4.95418 4.99231 5.03938 5.14792 5.21959 5.28719 5.46136 5.46476 5.61351 5.78842 6.04814 6.21187 6.22237 6.82766 6.92984 7.40838 8.91301 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.038576 B = 0.004602 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.671063 B = 6083.392671 C = 6130.819486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 F -0.227 7.227 4 C -0.134 4.134 5 C -0.117 4.117 6 C 0.045 3.955 7 N -0.560 5.560 8 C 0.075 3.925 9 C 0.021 3.979 10 H 0.117 0.883 11 C 0.265 3.735 12 N -0.517 5.517 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.947 3.053 19 H -0.285 1.285 20 H -0.277 1.277 21 H -0.264 1.264 22 C 0.036 3.964 23 H 0.097 0.903 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 -2.489 -14.085 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.091 3.909 3 F -0.208 7.208 4 C -0.172 4.172 5 C -0.155 4.155 6 C -0.083 4.083 7 N -0.285 5.285 8 C -0.054 4.054 9 C -0.001 4.001 10 H 0.134 0.866 11 C -0.051 4.051 12 N -0.194 5.194 13 C 0.000 4.000 14 C -0.578 4.578 15 H 0.070 0.930 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.773 3.227 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.092 4.092 23 H 0.116 0.884 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.989 -0.390 -13.882 20.434 hybrid contribution 0.989 -0.718 0.622 1.371 sum -14.001 -1.107 -13.260 19.315 Atomic orbital electron populations 1.22318 0.91485 1.04975 1.03622 1.21285 0.95343 0.77474 0.96753 1.92819 1.90816 1.39471 1.97706 1.22181 0.96091 1.02334 0.96591 1.21566 0.95745 1.00836 0.97380 1.22295 1.00632 0.95747 0.89583 1.61784 1.08195 1.55750 1.02740 1.22037 0.91698 0.99667 0.91986 1.19240 0.96920 0.81230 1.02702 0.86590 1.29411 0.90231 0.95136 0.90322 1.80972 1.11837 1.14838 1.11769 1.18989 0.94313 0.95913 0.90756 1.21542 0.93323 1.35143 1.07748 0.92963 1.25685 1.02717 0.94931 0.95228 1.70027 1.37157 1.37391 1.11682 0.85715 0.80900 0.77482 0.78624 1.21138 1.20196 1.18848 1.22692 0.87434 1.00947 0.98086 0.88432 0.91710 0.90771 0.90155 0.87929 0.93536 0.88935 0.90825 0.92342 0.90569 0.90778 0.94356 0.98110 0.92682 0.90576 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.94 71.98 0.64 -1.62 16 2 C 0.11 2.19 1.27 -10.74 -0.01 2.17 16 3 F -0.23 -6.67 16.35 44.97 0.74 -5.94 16 4 C -0.13 -2.15 5.07 30.68 0.16 -1.99 16 5 C -0.12 -2.32 5.97 30.65 0.18 -2.14 16 6 C 0.04 0.99 5.30 86.33 0.46 1.45 16 7 N -0.56 -14.81 4.29 -896.35 -3.85 -18.65 16 8 C 0.07 2.16 4.32 86.30 0.37 2.53 16 9 C 0.02 0.77 2.14 -12.60 -0.03 0.74 16 10 H 0.12 3.94 6.23 -2.39 -0.01 3.93 16 11 C 0.27 11.55 13.67 89.44 1.22 12.77 16 12 N -0.52 -24.76 18.54 20.01 0.37 -24.39 16 13 C 0.04 1.81 4.42 29.85 0.13 1.94 16 14 C -0.54 -28.82 8.60 25.60 0.22 -28.60 16 15 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 16 C 0.01 0.74 5.46 84.66 0.46 1.20 16 17 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 18 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.04 0.77 4.50 86.33 0.39 1.16 16 23 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.19 7.91 -2.39 -0.02 1.17 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.79 6.13 -2.38 -0.01 1.77 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 33 H 0.07 2.22 7.98 -2.39 -0.02 2.20 16 34 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 36 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 Total: -1.00 -67.05 314.68 4.79 -62.25 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.03 Total: 4.15 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.20 Total: -10.38 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -3.19 Total: -95.73 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.74 Total: -5.94 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.05 4.79 -62.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.246 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds