Wall clock time and date at job start Mon Mar 30 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39899 * 109.50537 * 2 1 4 4 C 1.53123 * 109.53442 * 120.10142 * 2 1 3 5 5 C 1.53125 * 109.15694 * 177.61522 * 4 2 1 6 6 C 1.53042 * 109.27668 * 302.34082 * 5 4 2 7 7 N 1.46845 * 109.52150 * 59.18221 * 6 5 4 8 8 C 1.46903 * 110.99977 * 174.15735 * 7 6 5 9 9 C 1.53004 * 109.47161 * 199.98905 * 8 7 6 10 10 H 1.09000 * 109.47156 * 304.65309 * 9 8 7 11 11 C 1.47200 * 109.46933 * 64.65405 * 9 8 7 12 12 N 5.26853 * 137.61150 * 300.18481 * 2 1 3 13 13 C 1.52996 * 109.46712 * 184.65488 * 9 8 7 14 14 C 1.50701 * 109.46945 * 174.99913 * 13 9 8 15 15 H 1.08002 * 120.00001 * 0.02562 * 14 13 9 16 16 C 1.37881 * 120.00220 * 180.27059 * 14 13 9 17 17 N 1.31513 * 119.99982 * 359.73126 * 16 14 13 18 18 Si 1.86794 * 120.00022 * 179.72560 * 16 14 13 19 19 H 1.48500 * 109.47259 * 90.00372 * 18 16 14 20 20 H 1.48505 * 109.47264 * 210.00577 * 18 16 14 21 21 H 1.48502 * 109.47402 * 330.00331 * 18 16 14 22 22 C 1.46846 * 111.19962 * 298.25634 * 7 6 5 23 23 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46525 * 300.07477 * 1 2 3 25 25 H 1.08994 * 109.47056 * 60.07617 * 1 2 3 26 26 H 1.08997 * 109.52084 * 297.51795 * 4 2 1 27 27 H 1.08997 * 109.52378 * 57.71144 * 4 2 1 28 28 H 1.09002 * 109.50608 * 62.28128 * 5 4 2 29 29 H 1.08997 * 109.49899 * 182.40534 * 5 4 2 30 30 H 1.08995 * 109.46650 * 299.16940 * 6 5 4 31 31 H 1.08996 * 109.45844 * 179.19691 * 6 5 4 32 32 H 1.08998 * 109.46691 * 79.99233 * 8 7 6 33 33 H 1.09002 * 109.47008 * 319.99053 * 8 7 6 34 34 H 1.08998 * 109.47646 * 55.00266 * 13 9 8 35 35 H 1.08998 * 109.47581 * 295.00071 * 13 9 8 36 36 H 0.96990 * 120.00412 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.46319 * 181.75955 * 22 7 6 38 38 H 1.09003 * 109.46453 * 301.72626 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9971 1.3187 0.0000 4 6 2.0420 -0.7238 1.2485 5 6 3.5721 -0.7710 1.2099 6 6 4.0237 -1.4717 -0.0735 7 7 3.5092 -0.7409 -1.2387 8 6 4.0371 -1.3042 -2.4885 9 6 3.9089 -0.2696 -3.6084 10 1 2.8710 0.0538 -3.6873 11 6 4.7625 0.8906 -3.3046 12 7 5.4213 1.7858 -3.0702 13 6 4.3505 -0.8947 -4.9331 14 6 4.1091 0.0823 -6.0548 15 1 3.6837 1.0524 -5.8438 16 6 4.4266 -0.2639 -7.3511 17 7 4.9450 -1.4450 -7.6080 18 14 4.1203 0.9443 -8.7423 19 1 5.3246 1.7910 -8.9369 20 1 3.8334 0.1968 -9.9930 21 1 2.9592 1.8057 -8.4032 22 6 2.0409 -0.7230 -1.2483 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3632 0.5150 0.8894 25 1 -0.3633 0.5126 -0.8906 26 1 1.7165 -0.1873 2.1397 27 1 1.6467 -1.7393 1.2687 28 1 3.9681 0.2444 1.2289 29 1 3.9409 -1.3224 2.0747 30 1 3.6388 -2.4913 -0.0854 31 1 5.1128 -1.4943 -0.1108 32 1 3.4705 -2.1972 -2.7523 33 1 5.0866 -1.5662 -2.3542 34 1 3.7781 -1.8044 -5.1144 35 1 5.4121 -1.1371 -4.8846 36 1 5.1681 -1.6888 -8.5199 37 1 1.6899 -0.2019 -2.1391 38 1 1.6652 -1.7463 -1.2547 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451114290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:25 Heat of formation + Delta-G solvation = -42.486472 kcal Electronic energy + Delta-G solvation = -19200.745369 eV Core-core repulsion = 16184.683836 eV Total energy + Delta-G solvation = -3016.061534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.45054 -38.88487 -36.32499 -34.20359 -33.25056 -32.16274 -31.06190 -27.18494 -26.85934 -24.63092 -22.52196 -21.61308 -21.60972 -19.70702 -16.76973 -16.65120 -16.03908 -15.51302 -15.36453 -14.90201 -14.75272 -14.34377 -14.05492 -13.33977 -13.20072 -12.75245 -12.63778 -12.52673 -12.30370 -12.25508 -12.15917 -11.86187 -11.61722 -11.26532 -11.20881 -11.04707 -10.94761 -10.69606 -10.55758 -10.39547 -10.29366 -10.06215 -9.50053 -9.20494 -8.44223 -8.20256 -6.08289 -4.11074 3.31293 3.37735 3.41388 3.77327 3.86123 3.95542 4.34382 4.42641 4.49349 4.61278 4.66781 4.92070 4.98670 5.13669 5.29989 5.30522 5.36123 5.44216 5.45294 5.49730 5.59038 5.71873 5.74183 5.86572 5.88687 5.95014 6.00777 6.06812 6.27759 6.39208 6.52158 7.12976 7.16671 7.43555 7.54715 7.87440 8.25293 8.67384 8.93886 9.54354 11.02690 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.005031 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.863753 B = 5563.799002 C = 5727.126064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 F -0.198 7.198 4 C -0.139 4.139 5 C -0.119 4.119 6 C 0.055 3.945 7 N -0.538 5.538 8 C 0.063 3.937 9 C 0.013 3.987 10 H 0.098 0.902 11 C 0.257 3.743 12 N -0.480 5.480 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.034 3.966 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -4.199 16.621 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 F -0.179 7.179 4 C -0.177 4.177 5 C -0.157 4.157 6 C -0.073 4.073 7 N -0.262 5.262 8 C -0.065 4.065 9 C -0.009 4.009 10 H 0.115 0.885 11 C -0.060 4.060 12 N -0.156 5.156 13 C -0.007 4.007 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.095 4.095 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.312 -2.447 16.867 18.546 hybrid contribution -0.644 -0.477 -1.065 1.333 sum -7.956 -2.925 15.802 17.932 Atomic orbital electron populations 1.22351 0.93707 1.03406 1.03625 1.20900 0.93652 0.78896 0.96175 1.92877 1.90263 1.37178 1.97575 1.22171 0.97151 1.01048 0.97326 1.21578 0.94740 1.02391 0.96951 1.22118 1.00364 0.94690 0.90137 1.61845 1.06877 1.54817 1.02668 1.22246 1.00840 0.95693 0.87711 1.19198 0.97043 0.87700 0.96969 0.88453 1.28793 0.93039 0.93707 0.90442 1.80967 1.11260 1.11806 1.11606 1.19173 0.97709 0.96384 0.87473 1.21148 1.42419 1.01002 0.91724 0.92493 1.24946 0.94903 0.95224 0.98870 1.69934 1.42895 1.19957 1.20353 0.86595 0.78790 0.81160 0.81554 1.20628 1.21125 1.19737 1.22727 0.88806 0.99691 0.98269 0.90817 0.91410 0.91033 0.90902 0.90560 0.90517 0.91228 0.94772 0.90411 0.92557 0.90161 0.94518 0.95588 0.92829 0.88990 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 8.94 37.16 0.33 -1.18 16 2 C 0.12 1.39 1.27 -90.53 -0.11 1.27 16 3 F -0.20 -3.03 16.34 2.25 0.04 -2.99 16 4 C -0.14 -1.31 5.07 -26.60 -0.13 -1.44 16 5 C -0.12 -1.23 5.97 -26.65 -0.16 -1.39 16 6 C 0.05 0.63 5.43 -3.83 -0.02 0.61 16 7 N -0.54 -7.50 4.21 -234.66 -0.99 -8.49 16 8 C 0.06 0.96 4.37 -3.82 -0.02 0.94 16 9 C 0.01 0.25 2.27 -93.41 -0.21 0.03 16 10 H 0.10 1.76 6.71 -51.93 -0.35 1.42 16 11 C 0.26 5.62 13.66 -20.76 -0.28 5.34 16 12 N -0.48 -11.39 18.54 42.15 0.78 -10.61 16 13 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 14 C -0.52 -14.12 8.60 -34.44 -0.30 -14.41 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.03 0.41 4.33 -3.83 -0.02 0.39 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 32 H 0.06 0.76 8.00 -51.93 -0.42 0.35 16 33 H 0.08 1.21 7.79 -51.93 -0.40 0.80 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 1.20 6.65 -51.92 -0.35 0.85 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -31.17 315.32 -6.94 -38.11 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -6.10 Total: -4.74 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.14 Total: -7.61 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.53 Total: -43.97 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.17 -6.94 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451114290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.375 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds