Wall clock time and date at job start Mon Mar 30 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47223 * 2 1 4 4 C 1.37643 * 119.87811 * 90.00060 * 3 2 1 5 5 C 1.40698 * 119.74283 * 180.02562 * 4 3 2 6 6 C 1.41401 * 120.23799 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99586 * 154.53299 * 6 5 4 8 8 C 1.39941 * 120.00214 * 334.53431 * 6 5 4 9 9 N 1.30819 * 120.00354 * 334.59866 * 8 6 5 10 10 Si 1.86805 * 119.99890 * 154.59976 * 8 6 5 11 11 H 1.48494 * 109.47362 * 179.97438 * 10 8 6 12 12 H 1.48504 * 109.47172 * 300.00294 * 10 8 6 13 13 H 1.48498 * 109.47124 * 59.99910 * 10 8 6 14 14 C 1.40725 * 119.51492 * 0.27260 * 5 4 3 15 15 C 1.50703 * 120.12827 * 179.72647 * 14 5 4 16 16 C 1.53001 * 109.47149 * 90.00049 * 15 14 5 17 17 C 1.37602 * 119.74251 * 359.44761 * 14 5 4 18 18 C 1.50706 * 119.87321 * 180.27401 * 17 14 5 19 19 F 1.39897 * 109.46969 * 300.30024 * 18 17 14 20 20 F 1.39898 * 109.47069 * 60.30618 * 18 17 14 21 21 C 1.38608 * 119.87530 * 270.02365 * 3 2 1 22 22 H 1.09000 * 109.47154 * 299.99987 * 1 2 3 23 23 H 1.08993 * 109.46917 * 60.00165 * 1 2 3 24 24 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47154 * 240.00013 * 2 1 3 26 26 H 1.09005 * 109.47275 * 119.99690 * 2 1 3 27 27 H 1.08001 * 120.12229 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99877 * 354.17421 * 9 8 6 29 29 H 1.08996 * 109.46877 * 209.99967 * 15 14 5 30 30 H 1.08994 * 109.46787 * 330.00068 * 15 14 5 31 31 H 1.08998 * 109.47074 * 59.99850 * 16 15 14 32 32 H 1.08999 * 109.47245 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.46995 * 300.00231 * 16 15 14 34 34 H 1.09002 * 109.46417 * 180.30499 * 18 17 14 35 35 H 1.08000 * 119.75005 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2609 2.0672 1.1935 5 6 2.7294 3.3939 1.1902 6 6 2.9673 4.0682 2.4101 7 1 3.6800 4.8787 2.4490 8 6 2.2792 3.6853 3.5669 9 7 1.1146 3.0972 3.4709 10 14 3.0237 4.0139 5.2484 11 1 2.1037 3.5171 6.3028 12 1 4.3280 3.3124 5.3580 13 1 3.2311 5.4742 5.4211 14 6 2.9536 4.0469 -0.0361 15 6 3.4494 5.4699 -0.0558 16 6 4.9793 5.4768 -0.0662 17 6 2.7237 3.3792 -1.2171 18 6 2.9687 4.0737 -2.5320 19 9 2.1594 5.2117 -2.6162 20 9 4.3133 4.4503 -2.6171 21 6 2.2620 2.0719 -1.2019 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0813 1.5580 2.1288 28 1 0.6891 3.0023 2.6044 29 1 3.0777 5.9718 -0.9490 30 1 3.0898 5.9922 0.8307 31 1 5.3389 4.9545 -0.9527 32 1 5.3380 6.5060 -0.0809 33 1 5.3510 4.9748 0.8270 34 1 2.7286 3.3957 -3.3511 35 1 2.0800 1.5570 -2.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575651879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:35 Heat of formation + Delta-G solvation = -129.697245 kcal Electronic energy + Delta-G solvation = -19342.002216 eV Core-core repulsion = 16166.405884 eV Total energy + Delta-G solvation = -3175.596333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.94433 -47.87582 -40.20699 -36.30580 -35.73272 -33.25474 -31.90133 -29.62073 -27.19617 -26.61901 -25.05793 -22.95480 -22.71000 -20.88458 -19.36750 -18.36637 -18.10286 -17.45251 -16.48601 -16.27902 -15.79567 -15.25847 -15.04834 -14.84916 -14.61433 -14.35496 -14.21039 -13.98392 -13.84654 -13.65257 -13.43485 -12.95111 -12.88848 -12.53069 -12.23215 -12.13981 -12.10114 -11.99610 -11.87705 -11.69327 -11.13965 -11.08751 -10.82681 -9.57646 -9.36679 -9.00926 -6.42005 0.68093 0.88212 1.48531 1.59896 1.76450 2.31476 2.60013 2.97854 3.38572 3.42966 3.86107 4.09565 4.22691 4.23964 4.27567 4.30995 4.55940 4.62449 4.65858 4.81001 4.85226 4.93857 4.97619 5.04172 5.09738 5.22086 5.34605 5.36636 5.38605 5.50163 5.76280 5.80531 5.91989 5.99410 6.25313 6.35703 6.80942 6.94972 8.06251 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.009677 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.947331 B = 2892.748071 C = 4196.909598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C -0.062 4.062 4 C -0.219 4.219 5 C 0.069 3.931 6 C -0.546 4.546 7 H 0.073 0.927 8 C 0.005 3.995 9 N -0.818 5.818 10 Si 1.109 2.891 11 H -0.272 1.272 12 H -0.265 1.265 13 H -0.260 1.260 14 C -0.170 4.170 15 C -0.071 4.071 16 C -0.139 4.139 17 C -0.143 4.143 18 C 0.315 3.685 19 F -0.213 7.213 20 F -0.207 7.207 21 C -0.209 4.209 22 H 0.031 0.969 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.283 0.717 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.152 0.848 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -2.080 -7.147 7.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.063 4.063 4 C -0.239 4.239 5 C 0.066 3.934 6 C -0.574 4.574 7 H 0.091 0.909 8 C -0.211 4.211 9 N -0.442 5.442 10 Si 0.927 3.073 11 H -0.197 1.197 12 H -0.190 1.190 13 H -0.184 1.184 14 C -0.171 4.171 15 C -0.108 4.108 16 C -0.196 4.196 17 C -0.144 4.144 18 C 0.262 3.738 19 F -0.194 7.194 20 F -0.188 7.188 21 C -0.228 4.228 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.169 0.831 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.566 -2.290 -5.547 6.202 hybrid contribution 0.108 0.484 -1.320 1.410 sum 1.674 -1.806 -6.867 7.295 Atomic orbital electron populations 1.21656 0.94354 1.02149 1.01196 1.20484 0.96546 0.91861 1.02381 1.19778 0.97498 0.96395 0.92592 1.21102 1.11045 0.95115 0.96642 1.17826 0.90754 0.91822 0.92963 1.20672 1.23765 1.18176 0.94782 0.90872 1.28256 0.93545 0.90897 1.08422 1.70567 1.12670 1.30372 1.30570 0.83096 0.76066 0.78397 0.69730 1.19666 1.18991 1.18445 1.19835 1.08614 0.96342 0.92333 1.20302 0.96424 0.93168 1.00892 1.21780 0.94805 1.01400 1.01588 1.20091 1.04787 0.96218 0.93312 1.20710 0.72003 0.82835 0.98275 1.92898 1.73589 1.55670 1.97292 1.92892 1.35928 1.92757 1.97231 1.20364 1.10646 0.94336 0.97475 0.94986 0.92408 0.90388 0.89487 0.92535 0.89502 0.90511 0.91923 0.93318 0.91823 0.91835 0.94442 0.83135 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.89 71.98 0.71 -3.40 16 2 C -0.08 -2.51 6.06 29.85 0.18 -2.33 16 3 C -0.06 -2.63 5.13 -19.92 -0.10 -2.73 16 4 C -0.22 -11.04 7.59 22.73 0.17 -10.86 16 5 C 0.07 3.63 5.30 -21.29 -0.11 3.51 16 6 C -0.55 -29.19 8.06 23.46 0.19 -29.00 16 7 H 0.07 3.86 6.67 -2.91 -0.02 3.84 16 8 C 0.00 0.25 4.94 85.26 0.42 0.67 16 9 N -0.82 -44.29 12.32 21.82 0.27 -44.03 16 10 Si 1.11 43.86 30.00 68.60 2.06 45.91 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 12 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 13 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 14 C -0.17 -8.10 5.15 -19.41 -0.10 -8.20 16 15 C -0.07 -3.08 4.75 29.85 0.14 -2.94 16 16 C -0.14 -5.37 9.69 71.98 0.70 -4.68 16 17 C -0.14 -5.93 5.37 -19.91 -0.11 -6.04 16 18 C 0.31 10.52 4.94 71.24 0.35 10.87 16 19 F -0.21 -7.69 15.31 44.97 0.69 -7.00 16 20 F -0.21 -7.17 14.06 44.97 0.63 -6.54 16 21 C -0.21 -8.14 9.33 22.46 0.21 -7.93 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 26 H 0.06 1.92 8.08 -2.38 -0.02 1.90 16 27 H 0.09 4.65 6.49 -2.91 -0.02 4.63 16 28 H 0.28 15.93 6.69 -92.71 -0.62 15.31 16 29 H 0.06 2.60 5.50 -2.39 -0.01 2.59 16 30 H 0.05 2.27 6.78 -2.39 -0.02 2.25 16 31 H 0.06 2.40 5.65 -2.39 -0.01 2.39 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.53 7.88 -2.39 -0.02 1.51 16 34 H 0.15 3.63 7.87 -2.39 -0.02 3.61 16 35 H 0.13 4.11 7.93 -2.91 -0.02 4.08 16 Total: -1.00 -59.03 289.39 7.55 -51.49 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 1.24 Total: 23.21 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 2.65 Total: -63.05 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.27 Total: -44.03 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 1.32 Total: -13.54 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.06 Total: 45.91 kcal Total: -59.03 7.55 -51.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575651879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.212 kcal (2) G-P(sol) polarization free energy of solvation -59.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds