Wall clock time and date at job start Mon Mar 30 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50692 * 109.46995 * 2 1 4 4 C 1.37639 * 120.13162 * 264.97715 * 3 2 1 5 5 C 1.38612 * 120.25167 * 179.74852 * 4 3 2 6 6 C 1.50700 * 119.74892 * 180.29494 * 5 4 3 7 7 F 1.39902 * 109.47116 * 120.25646 * 6 5 4 8 8 F 1.39897 * 109.47337 * 240.25563 * 6 5 4 9 9 C 1.38651 * 120.50226 * 0.55448 * 5 4 3 10 10 C 1.50698 * 119.87913 * 179.72213 * 9 5 4 11 11 C 1.53005 * 109.47195 * 84.72268 * 10 9 5 12 12 C 1.37597 * 120.24608 * 359.44034 * 9 5 4 13 13 C 1.40706 * 120.12887 * 84.99881 * 3 2 1 14 14 C 1.41392 * 120.24102 * 359.95066 * 13 3 2 15 15 H 1.07994 * 120.00615 * 334.18373 * 14 13 3 16 16 C 1.39952 * 119.99814 * 154.17752 * 14 13 3 17 17 N 1.30824 * 119.99730 * 343.55617 * 16 14 13 18 18 Si 1.86794 * 120.00271 * 163.55354 * 16 14 13 19 19 H 1.48508 * 109.46838 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47265 * 120.00177 * 18 16 14 21 21 H 1.48494 * 109.47071 * 240.00282 * 18 16 14 22 22 H 1.08999 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47070 * 300.00264 * 1 2 3 24 24 H 1.09000 * 109.46939 * 60.00178 * 1 2 3 25 25 H 1.09001 * 109.47000 * 239.99859 * 2 1 3 26 26 H 1.09000 * 109.46939 * 119.99822 * 2 1 3 27 27 H 1.08008 * 119.86946 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47600 * 0.25624 * 6 5 4 29 29 H 1.08994 * 109.47195 * 204.72159 * 10 9 5 30 30 H 1.09000 * 109.46811 * 324.72443 * 10 9 5 31 31 H 1.08992 * 109.47150 * 60.00009 * 11 10 9 32 32 H 1.09001 * 109.46646 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.46716 * 299.99832 * 11 10 9 34 34 H 1.07998 * 120.13012 * 180.25235 * 12 9 5 35 35 H 0.97007 * 120.00155 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3609 2.0374 -1.1858 5 6 2.8182 3.3459 -1.1892 6 6 3.1684 4.0123 -2.4947 7 9 2.3693 5.1475 -2.6679 8 9 4.5158 4.3884 -2.4797 9 6 2.9610 4.0446 -0.0001 10 6 3.4654 5.4645 -0.0196 11 6 2.2963 6.4175 -0.2770 12 6 2.6385 3.4482 1.1972 13 6 2.1677 2.1220 1.2123 14 6 1.8327 1.4990 2.4366 15 1 1.1123 0.6946 2.4539 16 6 2.4349 1.9246 3.6261 17 7 3.5197 2.6547 3.5852 18 14 1.6896 1.4505 5.2720 19 1 0.4736 0.6284 5.0463 20 1 2.6784 0.6678 6.0560 21 1 1.3238 2.6788 6.0220 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2577 1.5011 -2.1177 28 1 2.9945 3.3169 -3.3158 29 1 3.9221 5.7011 0.9414 30 1 4.2062 5.5761 -0.8113 31 1 1.5555 6.3059 0.5147 32 1 2.6613 7.4445 -0.2915 33 1 1.8396 6.1809 -1.2380 34 1 2.7466 3.9955 2.1220 35 1 3.9373 2.9495 4.4097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575652068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:38 Heat of formation + Delta-G solvation = -123.162407 kcal Electronic energy + Delta-G solvation = -19248.622884 eV Core-core repulsion = 16073.309923 eV Total energy + Delta-G solvation = -3175.312961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.80616 -47.74367 -39.96088 -36.21580 -35.39992 -33.15066 -31.99682 -29.26337 -28.55659 -25.36912 -24.97573 -22.85952 -22.82081 -20.63974 -18.95484 -18.17838 -17.97827 -17.47816 -16.98985 -15.90283 -15.71820 -15.13846 -14.94385 -14.72977 -14.40263 -14.26940 -14.14450 -13.97596 -13.76369 -13.33905 -13.23701 -12.99066 -12.86497 -12.74806 -12.48283 -12.05021 -12.01373 -11.82354 -11.67035 -11.56346 -11.18832 -11.03771 -10.88595 -9.34750 -9.02056 -8.64076 -6.36323 0.81609 1.12635 1.37021 1.45135 1.51348 2.17658 2.64662 3.15201 3.60915 3.65945 4.01283 4.19929 4.25019 4.40239 4.43505 4.47138 4.60585 4.62097 4.80773 4.91449 5.01704 5.04537 5.08584 5.14834 5.22535 5.25707 5.42328 5.49009 5.51858 5.57623 5.77018 5.94323 6.11515 6.18678 6.38072 6.69012 6.93748 7.03205 8.29605 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.007893 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.018332 B = 3546.632400 C = 4371.673413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.208 4.208 4 C -0.058 4.058 5 C -0.301 4.301 6 C 0.326 3.674 7 F -0.209 7.209 8 F -0.219 7.219 9 C -0.044 4.044 10 C -0.089 4.089 11 C -0.150 4.150 12 C -0.193 4.193 13 C 0.099 3.901 14 C -0.476 4.476 15 H 0.087 0.913 16 C 0.034 3.966 17 N -0.820 5.820 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.267 1.267 21 H -0.269 1.269 22 H 0.067 0.933 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -0.306 -6.125 6.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.210 4.210 4 C -0.077 4.077 5 C -0.303 4.303 6 C 0.273 3.727 7 F -0.191 7.191 8 F -0.201 7.201 9 C -0.044 4.044 10 C -0.126 4.126 11 C -0.207 4.207 12 C -0.213 4.213 13 C 0.096 3.904 14 C -0.505 4.505 15 H 0.105 0.895 16 C -0.182 4.182 17 N -0.446 5.446 18 Si 0.796 3.204 19 H -0.177 1.177 20 H -0.192 1.192 21 H -0.194 1.194 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.558 -0.160 -5.985 6.510 hybrid contribution 0.154 0.195 1.192 1.217 sum -2.404 0.036 -4.793 5.362 Atomic orbital electron populations 1.21658 0.95198 1.01294 1.01039 1.20123 0.95855 0.92357 1.00982 1.20052 1.10833 0.97293 0.92790 1.20514 0.96809 0.92888 0.97451 1.19701 1.19620 0.97774 0.93194 1.20418 0.71294 0.82810 0.98183 1.92798 1.74126 1.55877 1.96269 1.92879 1.36629 1.92871 1.97711 1.19548 0.96788 0.95111 0.92955 1.20599 0.98603 0.92101 1.01309 1.21994 0.97465 0.98342 1.02929 1.21106 1.08573 0.95799 0.95821 1.17909 0.88215 0.91072 0.93188 1.19940 1.21994 1.16990 0.91569 0.89510 1.26799 0.93485 0.93052 1.04870 1.69908 1.15053 1.28091 1.31510 0.85248 0.79546 0.79063 0.76510 1.17662 1.19191 1.19391 0.91426 0.94458 0.92901 0.91331 0.93140 0.85172 0.84189 0.93133 0.91102 0.94321 0.91524 0.90372 0.88568 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.79 71.98 0.70 -3.72 16 2 C -0.06 -2.09 5.41 29.85 0.16 -1.93 16 3 C -0.21 -9.35 5.19 -19.41 -0.10 -9.45 16 4 C -0.06 -2.36 9.28 22.22 0.21 -2.16 16 5 C -0.30 -12.58 5.40 -19.68 -0.11 -12.68 16 6 C 0.33 11.06 4.96 71.24 0.35 11.41 16 7 F -0.21 -7.21 13.55 44.97 0.61 -6.61 16 8 F -0.22 -7.99 15.32 44.97 0.69 -7.30 16 9 C -0.04 -2.04 5.09 -19.92 -0.10 -2.14 16 10 C -0.09 -3.65 5.40 29.85 0.16 -3.49 16 11 C -0.15 -5.41 9.67 71.98 0.70 -4.71 16 12 C -0.19 -10.16 8.31 22.73 0.19 -9.97 16 13 C 0.10 5.11 5.56 -21.29 -0.12 4.99 16 14 C -0.48 -24.35 8.11 23.46 0.19 -24.16 16 15 H 0.09 4.23 6.09 -2.91 -0.02 4.21 16 16 C 0.03 1.65 5.16 85.26 0.44 2.09 16 17 N -0.82 -42.63 10.97 21.83 0.24 -42.39 16 18 Si 0.98 37.48 29.59 68.60 2.03 39.51 16 19 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.04 1.36 7.29 -2.39 -0.02 1.34 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 26 H 0.05 2.03 7.06 -2.39 -0.02 2.01 16 27 H 0.13 4.18 7.93 -2.91 -0.02 4.15 16 28 H 0.14 3.57 7.86 -2.39 -0.02 3.55 16 29 H 0.05 2.13 8.05 -2.39 -0.02 2.11 16 30 H 0.07 2.82 5.73 -2.39 -0.01 2.80 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.80 4.95 -2.39 -0.01 2.79 16 34 H 0.10 5.40 6.21 -2.91 -0.02 5.38 16 35 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 Total: -1.00 -57.19 288.14 7.34 -49.85 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 1.10 Total: 22.85 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 2.67 Total: -55.92 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.24 Total: -42.39 kcal Atomic # 9 Polarization: -15.20 SS G_CDS: 1.30 Total: -13.91 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -57.19 7.34 -49.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.313 kcal (2) G-P(sol) polarization free energy of solvation -57.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds