Wall clock time and date at job start Mon Mar 30 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47127 * 2 1 4 4 C 1.37615 * 120.12644 * 264.99838 * 3 2 1 5 5 C 1.38632 * 120.24888 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.75143 * 179.74476 * 5 4 3 7 7 F 1.39895 * 109.47305 * 300.00038 * 6 5 4 8 8 F 1.39901 * 109.47055 * 60.00136 * 6 5 4 9 9 C 1.38640 * 120.49912 * 0.02562 * 5 4 3 10 10 C 1.37612 * 120.24865 * 359.97438 * 9 5 4 11 11 C 1.50705 * 120.12615 * 179.97438 * 10 9 5 12 12 C 1.53003 * 109.47016 * 264.15083 * 11 10 9 13 13 C 1.40715 * 119.74767 * 359.97438 * 10 9 5 14 14 C 1.41397 * 120.24511 * 180.02562 * 13 10 9 15 15 H 1.07997 * 119.99729 * 53.83076 * 14 13 10 16 16 C 1.39943 * 119.99693 * 233.83105 * 14 13 10 17 17 N 1.30818 * 120.00511 * 19.52236 * 16 14 13 18 18 Si 1.86805 * 119.99434 * 199.52170 * 16 14 13 19 19 H 1.48495 * 109.47502 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46926 * 120.00345 * 18 16 14 21 21 H 1.48499 * 109.46932 * 239.99596 * 18 16 14 22 22 H 1.09005 * 109.47230 * 300.00354 * 1 2 3 23 23 H 1.08999 * 109.46720 * 60.00027 * 1 2 3 24 24 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47095 * 239.99982 * 2 1 3 26 26 H 1.08998 * 109.46960 * 119.99482 * 2 1 3 27 27 H 1.07993 * 119.87702 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47161 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.87154 * 179.97438 * 9 5 4 30 30 H 1.08997 * 109.47098 * 24.14471 * 11 10 9 31 31 H 1.08999 * 109.47156 * 144.15240 * 11 10 9 32 32 H 1.09000 * 109.47247 * 180.02562 * 12 11 10 33 33 H 1.09002 * 109.47129 * 299.99754 * 12 11 10 34 34 H 1.09003 * 109.47491 * 59.99929 * 12 11 10 35 35 H 0.96994 * 120.00123 * 174.52384 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3604 2.0375 -1.1857 5 6 2.8223 3.3446 -1.1887 6 6 3.1838 4.0070 -2.4932 7 9 4.2055 3.2828 -3.1166 8 9 2.0604 4.0402 -3.3264 9 6 2.9596 4.0451 -0.0002 10 6 2.6375 3.4484 1.1973 11 6 2.7884 4.2122 2.4877 12 6 4.1388 3.8767 3.1240 13 6 2.1667 2.1224 1.2124 14 6 1.8322 1.4993 2.4367 15 1 1.1330 1.9726 3.1101 16 6 2.4071 0.2693 2.7758 17 7 3.5068 -0.1235 2.1862 18 14 1.6041 -0.8116 4.0706 19 1 0.3795 -0.1451 4.5817 20 1 1.2406 -2.1191 3.4677 21 1 2.5537 -1.0302 5.1912 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 2.2577 1.5011 -2.1174 28 1 3.5240 5.0248 -2.3018 29 1 3.3208 5.0628 -0.0143 30 1 2.7383 5.2820 2.2846 31 1 1.9858 3.9339 3.1706 32 1 4.2477 4.4288 4.0575 33 1 4.1890 2.8069 3.3270 34 1 4.9415 4.1550 2.4411 35 1 3.9487 -0.9368 2.4762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575652267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:46 Heat of formation + Delta-G solvation = -108.816833 kcal Electronic energy + Delta-G solvation = -19242.406423 eV Core-core repulsion = 16067.715533 eV Total energy + Delta-G solvation = -3174.690890 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.31129 -46.31294 -38.44891 -34.29436 -33.63772 -31.86151 -29.59498 -28.04527 -26.82365 -23.78040 -23.02751 -22.44927 -19.80215 -19.03353 -17.31960 -16.60426 -16.54834 -15.94557 -15.22950 -14.46662 -14.08107 -13.48739 -13.29702 -13.09176 -13.00364 -12.73103 -12.54117 -12.21868 -12.13302 -11.92762 -11.54745 -11.27743 -11.13924 -11.07896 -10.84065 -10.79731 -10.41242 -10.27931 -10.23049 -9.94582 -9.55205 -9.40077 -8.67511 -7.43659 -7.18821 -6.70526 -4.46575 2.49603 2.71296 3.03100 3.09905 3.13468 3.96178 4.46679 4.52343 5.00286 5.13745 5.36885 5.80194 5.88147 5.89222 6.05253 6.10835 6.15655 6.35385 6.36585 6.46222 6.55097 6.67311 6.76885 6.78015 6.95166 6.97688 7.06133 7.17894 7.22103 7.32158 7.56753 7.58790 7.68736 7.99147 8.10153 8.45753 8.77145 8.87730 10.28251 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.008226 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.536085 B = 3403.113286 C = 4126.851120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.265 4.265 6 C 0.321 3.679 7 F -0.213 7.213 8 F -0.215 7.215 9 C -0.075 4.075 10 C -0.157 4.157 11 C -0.054 4.054 12 C -0.137 4.137 13 C 0.156 3.844 14 C -0.489 4.489 15 H 0.083 0.917 16 C 0.089 3.911 17 N -0.806 5.806 18 Si 0.887 3.113 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.277 1.277 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 3.757 -1.419 4.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 C -0.121 4.121 4 C -0.087 4.087 5 C -0.266 4.266 6 C 0.268 3.732 7 F -0.195 7.195 8 F -0.196 7.196 9 C -0.093 4.093 10 C -0.158 4.158 11 C -0.091 4.091 12 C -0.195 4.195 13 C 0.154 3.846 14 C -0.520 4.520 15 H 0.100 0.900 16 C -0.125 4.125 17 N -0.433 5.433 18 Si 0.712 3.288 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.202 1.202 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.921 3.520 -1.497 3.934 hybrid contribution -0.148 -0.644 0.348 0.747 sum -1.069 2.876 -1.149 3.276 Atomic orbital electron populations 1.21667 0.96991 0.99549 1.01381 1.20489 0.94062 0.94344 1.02432 1.19974 1.03673 0.96369 0.92047 1.20329 0.98008 0.93276 0.97103 1.19542 1.17250 0.97442 0.92393 1.20279 0.73899 0.95080 0.83947 1.92944 1.60547 1.81216 1.84775 1.92936 1.54315 1.97515 1.74857 1.20245 0.99889 0.97459 0.91751 1.20051 1.05447 0.97297 0.92999 1.20091 0.97849 0.96283 0.94897 1.21634 0.96661 1.02922 0.98254 1.17361 0.85288 0.89415 0.92559 1.19157 1.25923 1.03096 1.03855 0.89951 1.25515 0.94159 0.96561 0.96274 1.69794 1.13497 1.22476 1.37576 0.86598 0.80688 0.80628 0.80886 1.18483 1.19710 1.20215 0.92146 0.94192 0.94416 0.94505 0.88559 0.88795 0.88288 0.88570 0.94049 0.91610 0.94558 0.91113 0.94101 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.90 37.16 0.37 -2.33 16 2 C -0.08 -1.69 5.43 -27.88 -0.15 -1.84 16 3 C -0.12 -2.84 4.90 -103.91 -0.51 -3.35 16 4 C -0.07 -1.56 9.20 -39.66 -0.36 -1.93 16 5 C -0.26 -5.60 5.40 -104.33 -0.56 -6.16 16 6 C 0.32 5.82 5.44 36.01 0.20 6.02 16 7 F -0.21 -4.12 17.25 2.25 0.04 -4.08 16 8 F -0.21 -4.03 17.25 2.25 0.04 -3.99 16 9 C -0.07 -1.55 9.27 -39.66 -0.37 -1.92 16 10 C -0.16 -3.49 5.19 -103.91 -0.54 -4.03 16 11 C -0.05 -1.04 5.58 -27.88 -0.16 -1.20 16 12 C -0.14 -2.58 9.89 37.16 0.37 -2.21 16 13 C 0.16 3.76 5.10 -106.82 -0.54 3.22 16 14 C -0.49 -11.74 6.90 -37.74 -0.26 -12.00 16 15 H 0.08 1.96 7.36 -52.49 -0.39 1.57 16 16 C 0.09 2.10 3.37 -17.35 -0.06 2.04 16 17 N -0.81 -19.90 11.72 55.55 0.65 -19.25 16 18 Si 0.89 18.07 29.61 -169.99 -5.03 13.04 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H 0.06 1.21 7.97 -51.93 -0.41 0.80 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.78 8.05 -51.94 -0.42 0.36 16 26 H 0.10 2.29 4.15 -51.93 -0.22 2.07 16 27 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.10 1.44 7.86 -51.93 -0.41 1.03 16 29 H 0.10 1.69 7.93 -52.48 -0.42 1.28 16 30 H 0.04 0.70 8.05 -51.93 -0.42 0.29 16 31 H 0.07 1.29 7.00 -51.93 -0.36 0.93 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.53 7.87 -51.93 -0.41 1.12 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -25.44 297.88 -7.09 -32.54 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.70 Total: 2.94 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.58 Total: -25.69 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.65 Total: -19.25 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.44 -7.09 -32.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.280 kcal (2) G-P(sol) polarization free energy of solvation -25.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds