Wall clock time and date at job start Mon Mar 30 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46858 * 2 1 4 4 C 1.37619 * 119.87854 * 260.20233 * 3 2 1 5 5 C 1.40717 * 119.74516 * 179.97438 * 4 3 2 6 6 C 1.41399 * 120.23916 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00436 * 334.65252 * 6 5 4 8 8 C 1.39946 * 119.99707 * 154.65427 * 6 5 4 9 9 N 1.30831 * 120.00045 * 334.52540 * 8 6 5 10 10 Si 1.86800 * 120.00077 * 154.53069 * 8 6 5 11 11 H 1.48500 * 109.47078 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.46780 * 299.99664 * 10 8 6 13 13 H 1.48494 * 109.47359 * 59.99757 * 10 8 6 14 14 C 1.40711 * 119.51417 * 0.27234 * 5 4 3 15 15 C 1.37624 * 119.74181 * 359.40501 * 14 5 4 16 16 C 1.50697 * 119.87604 * 180.31495 * 15 14 5 17 17 C 1.53010 * 109.47214 * 270.65805 * 16 15 14 18 18 C 1.38635 * 120.24765 * 0.62300 * 15 14 5 19 19 C 1.50700 * 119.74945 * 179.69536 * 18 15 14 20 20 F 1.39900 * 109.46802 * 303.41482 * 19 18 15 21 21 F 1.39898 * 109.47252 * 63.41520 * 19 18 15 22 22 H 1.09004 * 109.46896 * 184.99161 * 1 2 3 23 23 H 1.09000 * 109.47004 * 304.98285 * 1 2 3 24 24 H 1.08990 * 109.47178 * 64.98712 * 1 2 3 25 25 H 1.09000 * 109.46987 * 240.00370 * 2 1 3 26 26 H 1.09000 * 109.47329 * 120.00330 * 2 1 3 27 27 H 1.08003 * 120.12593 * 0.02925 * 4 3 2 28 28 H 0.97004 * 119.99884 * 353.84179 * 9 8 6 29 29 H 1.07996 * 120.12907 * 179.72627 * 14 5 4 30 30 H 1.09000 * 109.46926 * 30.64838 * 16 15 14 31 31 H 1.08996 * 109.47351 * 150.65827 * 16 15 14 32 32 H 1.08991 * 109.47216 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.46755 * 299.99577 * 17 16 15 34 34 H 1.08996 * 109.46943 * 59.99772 * 17 16 15 35 35 H 1.08994 * 109.47207 * 183.42034 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4522 1.9995 -1.1759 5 6 2.9202 3.3266 -1.1727 6 6 3.3537 3.9316 -2.3750 7 1 3.7170 3.3196 -3.1872 8 6 3.3120 5.3237 -2.5123 9 7 2.4605 6.0252 -1.8091 10 14 4.4719 6.1803 -3.6999 11 1 4.2287 7.6447 -3.6598 12 1 5.8766 5.9005 -3.3081 13 1 4.2321 5.6767 -5.0760 14 6 2.9585 4.0453 0.0364 15 6 2.5273 3.4486 1.1992 16 6 2.5603 4.2179 2.4946 17 6 3.9152 4.0126 3.1754 18 6 2.0687 2.1404 1.1844 19 6 1.6056 1.4958 2.4655 20 9 2.6346 1.5476 3.4119 21 9 0.4876 2.1801 2.9543 22 1 -0.3633 -1.0238 0.0894 23 1 -0.3633 0.5892 0.8420 24 1 -0.3633 0.4345 -0.9312 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.4219 1.4376 -2.0977 28 1 1.7986 5.5761 -1.2602 29 1 3.3199 5.0628 0.0510 30 1 2.4131 5.2786 2.2911 31 1 1.7664 3.8600 3.1501 32 1 3.9389 4.5686 4.1125 33 1 4.0624 2.9519 3.3789 34 1 4.7090 4.3705 2.5199 35 1 1.3402 0.4562 2.2739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575652579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:41 Heat of formation + Delta-G solvation = -130.640960 kcal Electronic energy + Delta-G solvation = -19388.820438 eV Core-core repulsion = 16213.183182 eV Total energy + Delta-G solvation = -3175.637255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.87363 -47.79344 -40.24179 -36.59841 -35.82065 -33.41914 -31.40092 -29.61548 -28.43501 -25.56278 -24.75603 -24.24319 -21.92129 -20.96235 -19.40788 -18.54589 -18.04640 -17.90142 -16.22090 -16.13244 -15.59724 -15.32363 -15.04866 -14.92333 -14.77798 -14.49497 -14.24442 -14.04451 -13.84699 -13.57952 -13.41482 -13.03806 -12.85788 -12.62173 -12.54937 -12.18943 -12.04247 -11.99459 -11.82388 -11.72190 -11.33077 -11.06993 -10.87798 -9.60143 -9.41585 -9.13096 -6.56943 0.68506 0.88039 1.47855 1.57705 1.76997 2.28770 2.53107 3.05045 3.36852 3.52434 3.85949 3.99098 4.06653 4.15262 4.23891 4.30450 4.46913 4.53688 4.65351 4.72894 4.81567 4.87847 4.90168 4.98400 5.03837 5.08631 5.32419 5.33985 5.37315 5.41282 5.65676 5.75984 5.78810 5.95596 6.18523 6.32139 6.71276 6.86354 7.95633 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.007650 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.893726 B = 3659.147695 C = 4433.567989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.011 4.011 4 C -0.248 4.248 5 C 0.084 3.916 6 C -0.547 4.547 7 H 0.076 0.924 8 C 0.004 3.996 9 N -0.809 5.809 10 Si 1.115 2.885 11 H -0.271 1.271 12 H -0.264 1.264 13 H -0.254 1.254 14 C -0.245 4.245 15 C -0.015 4.015 16 C -0.091 4.091 17 C -0.140 4.140 18 C -0.307 4.307 19 C 0.323 3.677 20 F -0.211 7.211 21 F -0.217 7.217 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.284 0.716 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -7.582 4.670 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.011 4.011 4 C -0.268 4.268 5 C 0.081 3.919 6 C -0.574 4.574 7 H 0.094 0.906 8 C -0.213 4.213 9 N -0.432 5.432 10 Si 0.931 3.069 11 H -0.196 1.196 12 H -0.189 1.189 13 H -0.179 1.179 14 C -0.264 4.264 15 C -0.015 4.015 16 C -0.128 4.128 17 C -0.197 4.197 18 C -0.309 4.309 19 C 0.270 3.730 20 F -0.192 7.192 21 F -0.199 7.199 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.362 -6.054 4.207 7.381 hybrid contribution -0.557 -0.993 0.459 1.227 sum -0.919 -7.047 4.666 8.501 Atomic orbital electron populations 1.21759 0.93775 1.02832 1.01661 1.20691 0.96950 0.91365 1.03520 1.19541 0.94267 0.95822 0.91491 1.20945 1.11656 0.97156 0.97013 1.18067 0.87815 0.92917 0.93075 1.20860 1.40104 0.95379 1.01102 0.90554 1.28481 0.97908 0.95680 0.99250 1.70565 1.11292 1.41497 1.19798 0.83043 0.74139 0.75538 0.74154 1.19577 1.18868 1.17856 1.20882 1.12397 1.00553 0.92588 1.19535 0.94080 0.93410 0.94523 1.20645 0.99589 0.98752 0.93804 1.21795 0.95017 1.03101 0.99796 1.19473 1.20402 0.96535 0.94504 1.20462 0.73349 0.97196 0.81991 1.92871 1.60753 1.97543 1.68051 1.92897 1.54074 1.83368 1.89534 0.89467 0.93351 0.93613 0.90267 0.89513 0.88020 0.90395 0.89596 0.92595 0.90867 0.90881 0.91415 0.94155 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.64 71.98 0.69 -3.02 16 2 C -0.09 -2.58 5.36 29.85 0.16 -2.42 16 3 C -0.01 -0.44 5.13 -19.92 -0.10 -0.54 16 4 C -0.25 -11.78 9.41 22.73 0.21 -11.57 16 5 C 0.08 4.49 5.29 -21.29 -0.11 4.37 16 6 C -0.55 -29.30 8.99 23.46 0.21 -29.09 16 7 H 0.08 3.95 7.96 -2.91 -0.02 3.93 16 8 C 0.00 0.20 4.94 85.26 0.42 0.62 16 9 N -0.81 -44.03 12.31 21.83 0.27 -43.76 16 10 Si 1.11 42.89 30.00 68.60 2.06 44.95 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 14 C -0.24 -12.82 7.60 22.73 0.17 -12.65 16 15 C -0.02 -0.70 5.09 -19.92 -0.10 -0.80 16 16 C -0.09 -3.63 5.32 29.85 0.16 -3.47 16 17 C -0.14 -4.93 9.65 71.99 0.69 -4.24 16 18 C -0.31 -12.80 5.39 -19.67 -0.11 -12.91 16 19 C 0.32 11.01 4.09 71.24 0.29 11.30 16 20 F -0.21 -7.28 13.72 44.97 0.62 -6.66 16 21 F -0.22 -7.80 15.61 44.97 0.70 -7.09 16 22 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.05 1.32 7.20 -2.39 -0.02 1.30 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 2.17 8.00 -2.39 -0.02 2.15 16 26 H 0.09 2.12 6.60 -2.39 -0.02 2.10 16 27 H 0.10 4.59 8.03 -2.91 -0.02 4.56 16 28 H 0.28 16.19 6.72 -92.71 -0.62 15.57 16 29 H 0.09 4.78 6.51 -2.91 -0.02 4.76 16 30 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 31 H 0.07 2.82 5.58 -2.39 -0.01 2.80 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.39 5.67 -2.38 -0.01 2.37 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.14 3.71 5.15 -2.39 -0.01 3.70 16 Total: -1.00 -59.18 286.93 7.48 -51.69 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.24 Total: 25.28 kcal Atomic # 6 Polarization: -67.00 SS G_CDS: 2.59 Total: -64.40 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.27 Total: -43.76 kcal Atomic # 9 Polarization: -15.08 SS G_CDS: 1.32 Total: -13.76 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.06 Total: 44.95 kcal Total: -59.18 7.48 -51.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.946 kcal (2) G-P(sol) polarization free energy of solvation -59.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds