Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47058 * 2 1 4 4 C 1.38651 * 119.87723 * 266.30520 * 3 2 1 5 5 C 1.38611 * 120.50371 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.87786 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.47243 * 210.02094 * 6 5 4 8 8 F 1.39902 * 109.47099 * 330.01895 * 6 5 4 9 9 C 1.37643 * 120.24709 * 0.03909 * 5 4 3 10 10 C 1.40694 * 119.74267 * 359.97438 * 9 5 4 11 11 C 1.41394 * 120.24293 * 180.02562 * 10 9 5 12 12 H 1.07995 * 120.00231 * 206.36142 * 11 10 9 13 13 C 1.39948 * 119.99868 * 26.35768 * 11 10 9 14 14 N 1.30821 * 120.00185 * 16.77913 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 196.77107 * 13 11 10 16 16 H 1.48492 * 109.47377 * 265.02334 * 15 13 11 17 17 H 1.48508 * 109.47101 * 25.02455 * 15 13 11 18 18 H 1.48499 * 109.46891 * 145.01817 * 15 13 11 19 19 C 1.37598 * 119.87569 * 86.60742 * 3 2 1 20 20 C 1.50704 * 120.12870 * 359.97438 * 19 3 2 21 21 C 1.53001 * 109.47168 * 90.90570 * 20 19 3 22 22 H 1.08993 * 109.47509 * 305.40132 * 1 2 3 23 23 H 1.09006 * 109.46956 * 65.39911 * 1 2 3 24 24 H 1.09007 * 109.47085 * 185.39663 * 1 2 3 25 25 H 1.09000 * 109.47328 * 239.99989 * 2 1 3 26 26 H 1.08997 * 109.46738 * 119.99752 * 2 1 3 27 27 H 1.07999 * 119.74721 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47356 * 90.02030 * 6 5 4 29 29 H 1.07993 * 120.12425 * 180.02562 * 9 5 4 30 30 H 0.96995 * 120.00435 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47154 * 210.90710 * 20 19 3 32 32 H 1.08998 * 109.46925 * 330.90335 * 20 19 3 33 33 H 1.08998 * 109.46900 * 304.90025 * 21 20 19 34 34 H 1.09001 * 109.46608 * 64.90512 * 21 20 19 35 35 H 1.09000 * 109.47188 * 184.89886 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3356 2.0462 -1.1997 5 6 2.7980 3.3528 -1.2149 6 6 3.1228 4.0190 -2.5270 7 9 4.1422 4.9574 -2.3339 8 9 3.5454 3.0543 -3.4478 9 6 2.9619 4.0440 -0.0359 10 6 2.6576 3.4194 1.1875 11 6 2.8215 4.1197 2.4048 12 1 3.0085 3.5766 3.3193 13 6 2.7416 5.5168 2.4245 14 7 2.2014 6.1554 1.4187 15 14 3.4062 6.4698 3.8873 16 1 2.3021 6.7465 4.8409 17 1 4.4563 5.6675 4.5650 18 1 3.9890 7.7528 3.4188 19 6 2.1942 2.0906 1.1910 20 6 1.8697 1.4062 2.4939 21 6 3.1231 0.7130 3.0319 22 1 -0.3634 0.5953 0.8376 23 1 -0.3633 0.4278 -0.9344 24 1 -0.3633 -1.0232 0.0967 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2106 1.5112 -2.1295 28 1 2.2342 4.5214 -2.9092 29 1 3.3219 5.0621 -0.0501 30 1 2.1457 7.1237 1.4325 31 1 1.5249 2.1456 3.2167 32 1 1.0869 0.6656 2.3301 33 1 3.5179 0.0366 2.2738 34 1 3.8755 1.4624 3.2777 35 1 2.8688 0.1462 3.9275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575652708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = -116.513311 kcal Electronic energy + Delta-G solvation = -19115.755624 eV Core-core repulsion = 15940.730989 eV Total energy + Delta-G solvation = -3175.024635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.25054 -46.27047 -38.43745 -34.39412 -33.60579 -32.21496 -29.48412 -28.41530 -25.49083 -25.07822 -23.18348 -21.82184 -20.32845 -18.92842 -17.17605 -16.70663 -16.37613 -15.85396 -15.21846 -14.58016 -14.31895 -13.59749 -13.21347 -12.95684 -12.92028 -12.67430 -12.61912 -12.46164 -12.14103 -11.91498 -11.59930 -11.41625 -11.27485 -11.04513 -10.81040 -10.66560 -10.46982 -10.43427 -10.24211 -10.18850 -9.41654 -9.30028 -9.17208 -7.43659 -7.31723 -6.81974 -4.41248 2.58257 2.78985 3.05211 3.08100 3.14547 3.89450 4.45359 4.57215 5.11190 5.35809 5.50723 5.62539 5.69193 5.76345 5.88600 5.93883 6.01171 6.29038 6.30279 6.34282 6.39655 6.46225 6.55784 6.69330 6.74426 6.82402 6.96616 7.10837 7.15848 7.33839 7.47441 7.77500 7.89699 7.96943 8.17920 8.49251 8.81822 8.86439 10.13430 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.010239 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.817877 B = 2734.016880 C = 4277.103194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.058 4.058 4 C -0.206 4.206 5 C -0.155 4.155 6 C 0.314 3.686 7 F -0.207 7.207 8 F -0.214 7.214 9 C -0.129 4.129 10 C 0.113 3.887 11 C -0.456 4.456 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.793 5.793 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.260 1.260 18 H -0.275 1.275 19 C -0.171 4.171 20 C -0.065 4.065 21 C -0.142 4.142 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.281 0.719 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -4.500 -1.229 4.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.058 4.058 4 C -0.226 4.226 5 C -0.156 4.156 6 C 0.261 3.739 7 F -0.189 7.189 8 F -0.195 7.195 9 C -0.149 4.149 10 C 0.111 3.889 11 C -0.485 4.485 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.419 5.419 15 Si 0.729 3.271 16 H -0.196 1.196 17 H -0.184 1.184 18 H -0.200 1.200 19 C -0.172 4.172 20 C -0.102 4.102 21 C -0.199 4.199 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.269 -4.253 -1.322 4.631 hybrid contribution 0.357 0.682 0.423 0.878 sum -0.912 -3.571 -0.899 3.794 Atomic orbital electron populations 1.21718 0.95883 1.00256 1.02064 1.20442 0.95359 0.94612 1.01183 1.19072 0.99710 0.94213 0.92813 1.19896 1.11919 0.94455 0.96322 1.19908 1.06666 0.96139 0.92925 1.20367 0.86518 0.79316 0.87728 1.92934 1.63890 1.66238 1.95814 1.92907 1.91998 1.65799 1.68791 1.21101 1.02709 1.00479 0.90579 1.17367 0.88372 0.90301 0.92864 1.19554 1.43026 0.90827 0.95119 0.89928 1.25914 0.92586 0.98436 0.97267 1.69783 1.31170 1.10216 1.30694 0.86345 0.80082 0.79214 0.81429 1.19589 1.18382 1.20012 1.19608 1.08464 0.96363 0.92767 1.20209 0.96290 0.98080 0.95597 1.21720 0.99100 0.99945 0.99125 0.92430 0.93053 0.93678 0.92607 0.91754 0.88754 0.87791 0.85695 0.90780 0.91478 0.93144 0.93577 0.92576 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.65 37.16 0.36 -1.83 16 2 C -0.08 -1.35 5.36 -27.88 -0.15 -1.50 16 3 C -0.06 -1.23 5.13 -104.70 -0.54 -1.77 16 4 C -0.21 -4.53 9.04 -39.29 -0.36 -4.88 16 5 C -0.16 -3.57 5.73 -104.70 -0.60 -4.17 16 6 C 0.31 6.27 5.65 36.01 0.20 6.48 16 7 F -0.21 -4.40 16.47 2.25 0.04 -4.37 16 8 F -0.21 -4.19 16.47 2.25 0.04 -4.16 16 9 C -0.13 -3.28 8.03 -38.87 -0.31 -3.59 16 10 C 0.11 2.87 5.55 -106.83 -0.59 2.28 16 11 C -0.46 -11.46 8.12 -37.74 -0.31 -11.76 16 12 H 0.08 1.99 6.45 -52.49 -0.34 1.65 16 13 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 14 N -0.79 -19.93 11.02 55.55 0.61 -19.32 16 15 Si 0.90 18.30 29.59 -169.99 -5.03 13.27 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 19 C -0.17 -3.87 5.19 -103.91 -0.54 -4.41 16 20 C -0.06 -1.26 4.76 -27.88 -0.13 -1.39 16 21 C -0.14 -2.48 9.71 37.16 0.36 -2.12 16 22 H 0.06 0.93 7.21 -51.93 -0.37 0.56 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 26 H 0.06 1.05 6.11 -51.93 -0.32 0.74 16 27 H 0.09 1.92 7.59 -52.49 -0.40 1.52 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.13 3.32 5.80 -52.49 -0.30 3.02 16 30 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 31 H 0.07 1.38 6.82 -51.93 -0.35 1.02 16 32 H 0.05 0.89 5.58 -51.93 -0.29 0.60 16 33 H 0.05 0.78 7.52 -51.93 -0.39 0.39 16 34 H 0.06 1.05 7.72 -51.93 -0.40 0.64 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -26.16 291.66 -7.05 -33.21 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.41 Total: 3.88 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -2.69 Total: -26.91 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.52 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.16 -7.05 -33.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.305 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds