Wall clock time and date at job start Mon Mar 30 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47058 * 2 1 4 4 C 1.38651 * 119.87723 * 266.30520 * 3 2 1 5 5 C 1.38611 * 120.50371 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.87786 * 180.02562 * 5 4 3 7 7 F 1.39896 * 109.47243 * 210.02094 * 6 5 4 8 8 F 1.39902 * 109.47099 * 330.01895 * 6 5 4 9 9 C 1.37643 * 120.24709 * 0.03909 * 5 4 3 10 10 C 1.40694 * 119.74267 * 359.97438 * 9 5 4 11 11 C 1.41394 * 120.24293 * 180.02562 * 10 9 5 12 12 H 1.07995 * 120.00231 * 206.36142 * 11 10 9 13 13 C 1.39948 * 119.99868 * 26.35768 * 11 10 9 14 14 N 1.30821 * 120.00185 * 16.77913 * 13 11 10 15 15 Si 1.86802 * 119.99981 * 196.77107 * 13 11 10 16 16 H 1.48492 * 109.47377 * 265.02334 * 15 13 11 17 17 H 1.48508 * 109.47101 * 25.02455 * 15 13 11 18 18 H 1.48499 * 109.46891 * 145.01817 * 15 13 11 19 19 C 1.37598 * 119.87569 * 86.60742 * 3 2 1 20 20 C 1.50704 * 120.12870 * 359.97438 * 19 3 2 21 21 C 1.53001 * 109.47168 * 90.90570 * 20 19 3 22 22 H 1.08993 * 109.47509 * 305.40132 * 1 2 3 23 23 H 1.09006 * 109.46956 * 65.39911 * 1 2 3 24 24 H 1.09007 * 109.47085 * 185.39663 * 1 2 3 25 25 H 1.09000 * 109.47328 * 239.99989 * 2 1 3 26 26 H 1.08997 * 109.46738 * 119.99752 * 2 1 3 27 27 H 1.07999 * 119.74721 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.47356 * 90.02030 * 6 5 4 29 29 H 1.07993 * 120.12425 * 180.02562 * 9 5 4 30 30 H 0.96995 * 120.00435 * 179.97438 * 14 13 11 31 31 H 1.09000 * 109.47154 * 210.90710 * 20 19 3 32 32 H 1.08998 * 109.46925 * 330.90335 * 20 19 3 33 33 H 1.08998 * 109.46900 * 304.90025 * 21 20 19 34 34 H 1.09001 * 109.46608 * 64.90512 * 21 20 19 35 35 H 1.09000 * 109.47188 * 184.89886 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3356 2.0462 -1.1997 5 6 2.7980 3.3528 -1.2149 6 6 3.1228 4.0190 -2.5270 7 9 4.1422 4.9574 -2.3339 8 9 3.5454 3.0543 -3.4478 9 6 2.9619 4.0440 -0.0359 10 6 2.6576 3.4194 1.1875 11 6 2.8215 4.1197 2.4048 12 1 3.0085 3.5766 3.3193 13 6 2.7416 5.5168 2.4245 14 7 2.2014 6.1554 1.4187 15 14 3.4062 6.4698 3.8873 16 1 2.3021 6.7465 4.8409 17 1 4.4563 5.6675 4.5650 18 1 3.9890 7.7528 3.4188 19 6 2.1942 2.0906 1.1910 20 6 1.8697 1.4062 2.4939 21 6 3.1231 0.7130 3.0319 22 1 -0.3634 0.5953 0.8376 23 1 -0.3633 0.4278 -0.9344 24 1 -0.3633 -1.0232 0.0967 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2106 1.5112 -2.1295 28 1 2.2342 4.5214 -2.9092 29 1 3.3219 5.0621 -0.0501 30 1 2.1457 7.1237 1.4325 31 1 1.5249 2.1456 3.2167 32 1 1.0869 0.6656 2.3301 33 1 3.5179 0.0366 2.2738 34 1 3.8755 1.4624 3.2777 35 1 2.8688 0.1462 3.9275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575652708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:32 Heat of formation + Delta-G solvation = -127.458482 kcal Electronic energy + Delta-G solvation = -19116.230242 eV Core-core repulsion = 15940.730989 eV Total energy + Delta-G solvation = -3175.499253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87664 -47.89976 -40.14302 -36.07969 -35.28591 -33.77307 -31.16705 -29.98331 -27.31563 -26.69012 -24.63915 -23.42411 -22.00611 -20.60188 -18.93450 -18.29875 -18.02473 -17.60739 -16.85525 -16.20347 -15.99058 -15.10391 -14.83575 -14.55711 -14.38347 -14.26829 -14.22757 -14.06990 -13.73098 -13.42565 -13.22415 -12.94852 -12.84520 -12.63679 -12.43616 -12.26296 -12.02705 -11.97955 -11.77894 -11.70412 -11.08338 -11.02762 -10.88846 -9.25538 -9.05358 -8.61858 -6.29622 0.81329 1.03519 1.38054 1.47220 1.52460 2.20324 2.67534 2.98947 3.46279 3.61204 3.88347 4.17158 4.24109 4.35145 4.41574 4.46780 4.67141 4.71979 4.80661 4.91682 5.05407 5.07544 5.10542 5.16138 5.20129 5.25365 5.41924 5.46946 5.57012 5.60622 5.74494 5.97465 6.10851 6.19288 6.39360 6.65925 6.97398 7.04417 8.35320 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.010239 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.817877 B = 2734.016880 C = 4277.103194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.063 4.063 4 C -0.210 4.210 5 C -0.166 4.166 6 C 0.316 3.684 7 F -0.217 7.217 8 F -0.210 7.210 9 C -0.161 4.161 10 C 0.082 3.918 11 C -0.483 4.483 12 H 0.083 0.917 13 C 0.035 3.965 14 N -0.826 5.826 15 Si 0.972 3.028 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.272 1.272 19 C -0.179 4.179 20 C -0.062 4.062 21 C -0.134 4.134 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.286 0.714 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -6.151 -1.075 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.063 4.063 4 C -0.229 4.229 5 C -0.167 4.167 6 C 0.263 3.737 7 F -0.199 7.199 8 F -0.191 7.191 9 C -0.181 4.181 10 C 0.079 3.921 11 C -0.513 4.513 12 H 0.101 0.899 13 C -0.180 4.180 14 N -0.453 5.453 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.196 1.196 19 C -0.181 4.181 20 C -0.099 4.099 21 C -0.192 4.192 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.156 0.844 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.775 -5.918 -1.175 6.289 hybrid contribution 0.482 1.080 0.291 1.218 sum -1.293 -4.838 -0.884 5.085 Atomic orbital electron populations 1.21680 0.94348 1.02057 1.01409 1.20505 0.96557 0.91795 1.02501 1.19584 0.98433 0.96304 0.91983 1.20260 1.10977 0.94115 0.97539 1.20235 1.06112 0.96740 0.93576 1.20513 0.87266 0.79180 0.86723 1.92914 1.64521 1.66561 1.95872 1.92909 1.92069 1.65760 1.68350 1.20998 1.05123 1.00091 0.91872 1.17768 0.89270 0.91893 0.93121 1.19753 1.44549 0.91738 0.95253 0.89944 1.26688 0.92375 0.99030 0.99866 1.69850 1.32292 1.10609 1.32507 0.85341 0.79475 0.77698 0.78189 1.18681 1.18260 1.19634 1.20029 1.07466 0.95697 0.94862 1.20223 0.97837 0.98076 0.93763 1.21647 0.97485 0.99529 1.00512 0.93697 0.93317 0.90488 0.91108 0.90640 0.86835 0.84415 0.87967 0.90386 0.93102 0.90963 0.93034 0.94543 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.65 71.98 0.69 -3.10 16 2 C -0.08 -2.38 5.36 29.85 0.16 -2.22 16 3 C -0.06 -2.59 5.13 -19.92 -0.10 -2.69 16 4 C -0.21 -8.95 9.04 22.46 0.20 -8.74 16 5 C -0.17 -7.63 5.73 -19.92 -0.11 -7.75 16 6 C 0.32 12.42 5.65 71.24 0.40 12.82 16 7 F -0.22 -9.30 16.47 44.97 0.74 -8.56 16 8 F -0.21 -7.91 16.47 44.97 0.74 -7.16 16 9 C -0.16 -8.44 8.03 22.73 0.18 -8.26 16 10 C 0.08 4.26 5.55 -21.29 -0.12 4.14 16 11 C -0.48 -25.10 8.12 23.46 0.19 -24.91 16 12 H 0.08 4.11 6.45 -2.91 -0.02 4.09 16 13 C 0.04 1.75 5.15 85.26 0.44 2.19 16 14 N -0.83 -43.00 11.02 21.83 0.24 -42.76 16 15 Si 0.97 38.24 29.59 68.60 2.03 40.27 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 19 C -0.18 -8.10 5.19 -19.40 -0.10 -8.20 16 20 C -0.06 -2.35 4.76 29.85 0.14 -2.21 16 21 C -0.13 -4.49 9.71 71.98 0.70 -3.79 16 22 H 0.04 1.34 7.21 -2.39 -0.02 1.32 16 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.07 2.01 8.06 -2.39 -0.02 2.00 16 26 H 0.08 2.20 6.11 -2.39 -0.01 2.18 16 27 H 0.11 4.34 7.59 -2.91 -0.02 4.32 16 28 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 29 H 0.10 5.72 5.80 -2.91 -0.02 5.71 16 30 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 31 H 0.05 2.09 6.82 -2.39 -0.02 2.07 16 32 H 0.07 2.40 5.58 -2.39 -0.01 2.38 16 33 H 0.05 1.64 7.52 -2.39 -0.02 1.62 16 34 H 0.04 1.34 7.72 -2.39 -0.02 1.32 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -57.48 291.66 7.53 -49.95 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.10 Total: 20.98 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 2.68 Total: -52.72 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.24 Total: -42.76 kcal Atomic # 9 Polarization: -17.20 SS G_CDS: 1.48 Total: -15.72 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -57.48 7.53 -49.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.509 kcal (2) G-P(sol) polarization free energy of solvation -57.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds