Wall clock time and date at job start Mon Mar 30 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46764 * 2 1 4 4 C 1.37634 * 119.87309 * 93.04681 * 3 2 1 5 5 C 1.40701 * 119.74516 * 180.02562 * 4 3 2 6 6 C 1.41398 * 120.24674 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99789 * 24.90927 * 6 5 4 8 8 C 1.39946 * 120.00008 * 204.90277 * 6 5 4 9 9 N 1.30826 * 119.99651 * 16.49796 * 8 6 5 10 10 Si 1.86798 * 119.99803 * 196.49578 * 8 6 5 11 11 H 1.48491 * 109.47164 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46815 * 120.00185 * 10 8 6 13 13 H 1.48498 * 109.47151 * 239.99927 * 10 8 6 14 14 C 1.40735 * 119.50779 * 359.97438 * 5 4 3 15 15 C 1.37598 * 119.74832 * 0.02562 * 14 5 4 16 16 C 1.50697 * 119.87579 * 180.02562 * 15 14 5 17 17 F 1.39901 * 109.47341 * 29.99898 * 16 15 14 18 18 F 1.39905 * 109.47147 * 149.99530 * 16 15 14 19 19 C 1.38609 * 119.87558 * 273.06943 * 3 2 1 20 20 C 1.50700 * 119.75132 * 359.97438 * 19 3 2 21 21 C 1.52998 * 109.47428 * 271.46920 * 20 19 3 22 22 H 1.09005 * 109.46456 * 183.71681 * 1 2 3 23 23 H 1.08996 * 109.47021 * 303.71400 * 1 2 3 24 24 H 1.08994 * 109.47386 * 63.72492 * 1 2 3 25 25 H 1.08999 * 109.47237 * 240.00847 * 2 1 3 26 26 H 1.08991 * 109.47382 * 119.99860 * 2 1 3 27 27 H 1.08001 * 120.13249 * 0.02562 * 4 3 2 28 28 H 0.97004 * 119.99572 * 179.97438 * 9 8 6 29 29 H 1.08002 * 120.12230 * 180.27353 * 14 5 4 30 30 H 1.08996 * 109.47078 * 269.99784 * 16 15 14 31 31 H 1.08997 * 109.46948 * 31.47491 * 20 19 3 32 32 H 1.09002 * 109.46884 * 151.46842 * 20 19 3 33 33 H 1.08998 * 109.46976 * 65.61759 * 21 20 19 34 34 H 1.09000 * 109.47281 * 185.61526 * 21 20 19 35 35 H 1.09003 * 109.47294 * 305.61643 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3205 2.0461 1.1918 5 6 2.7888 3.3729 1.1887 6 6 3.0887 4.0252 2.4068 7 1 3.3523 3.4456 3.2791 8 6 3.0441 5.4219 2.4821 9 7 2.4270 6.1076 1.5544 10 14 3.8657 6.3072 3.9071 11 1 4.4910 5.3114 4.8140 12 1 4.9102 7.2241 3.3841 13 1 2.8497 7.0898 4.6556 14 6 2.9574 4.0456 -0.0359 15 6 2.6630 3.4008 -1.2153 16 6 2.8430 4.1182 -2.5283 17 9 3.8800 5.0502 -2.4121 18 9 3.1594 3.1908 -3.5269 19 6 2.2017 2.0933 -1.2002 20 6 1.8827 1.3979 -2.4985 21 6 3.1228 0.6527 -2.9962 22 1 -0.3632 -1.0256 0.0666 23 1 -0.3633 0.5704 0.8548 24 1 -0.3634 0.4549 -0.9214 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1879 1.5203 2.1258 28 1 2.3958 7.0757 1.6068 29 1 3.3205 5.0627 -0.0501 30 1 1.9191 4.6335 -2.7905 31 1 1.0711 0.6877 -2.3404 32 1 1.5799 2.1361 -3.2412 33 1 3.3666 -0.1513 -2.3017 34 1 2.9233 0.2332 -3.9822 35 1 3.9620 1.3454 -3.0591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575652712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:30 Heat of formation + Delta-G solvation = -105.393205 kcal Electronic energy + Delta-G solvation = -19314.436807 eV Core-core repulsion = 16139.894376 eV Total energy + Delta-G solvation = -3174.542431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.34857 -46.35258 -38.39800 -34.74620 -32.97569 -32.37936 -29.94963 -28.24460 -25.52379 -24.96369 -23.27726 -21.92577 -19.90162 -19.54286 -17.20677 -16.78873 -16.37266 -15.76347 -15.05567 -14.79839 -14.44622 -13.67112 -13.35321 -13.03464 -12.94557 -12.73427 -12.57609 -12.26032 -12.01918 -11.98165 -11.58276 -11.34073 -11.28789 -11.03094 -10.88072 -10.72178 -10.51099 -10.43933 -10.26242 -9.99326 -9.48760 -9.36314 -9.15222 -7.56358 -7.26756 -6.81926 -4.40908 2.58118 2.79280 3.05409 3.09787 3.11908 3.89698 4.44495 4.56529 5.10359 5.37273 5.49521 5.61539 5.68399 5.74328 5.76912 5.80098 5.97542 6.18592 6.27199 6.31911 6.40961 6.46440 6.49958 6.54947 6.71447 6.80676 6.92974 7.01514 7.19210 7.29531 7.43969 7.72447 7.92135 7.98347 8.16650 8.49707 8.80945 8.84859 10.13069 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.008312 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.974711 B = 3367.637834 C = 4460.395190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.056 4.056 4 C -0.206 4.206 5 C 0.106 3.894 6 C -0.460 4.460 7 H 0.079 0.921 8 C 0.075 3.925 9 N -0.794 5.794 10 Si 0.908 3.092 11 H -0.260 1.260 12 H -0.271 1.271 13 H -0.274 1.274 14 C -0.129 4.129 15 C -0.147 4.147 16 C 0.313 3.687 17 F -0.208 7.208 18 F -0.204 7.204 19 C -0.172 4.172 20 C -0.072 4.072 21 C -0.140 4.140 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.281 0.719 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -4.401 -4.668 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.225 4.225 5 C 0.103 3.897 6 C -0.489 4.489 7 H 0.097 0.903 8 C -0.143 4.143 9 N -0.419 5.419 10 Si 0.733 3.267 11 H -0.184 1.184 12 H -0.196 1.196 13 H -0.200 1.200 14 C -0.148 4.148 15 C -0.148 4.148 16 C 0.260 3.740 17 F -0.189 7.189 18 F -0.185 7.185 19 C -0.173 4.173 20 C -0.109 4.109 21 C -0.198 4.198 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.547 -4.152 -4.749 6.495 hybrid contribution 0.397 0.619 0.640 0.976 sum -1.149 -3.533 -4.108 5.539 Atomic orbital electron populations 1.21717 0.95899 1.00221 1.02082 1.20456 0.95355 0.94627 1.01228 1.19079 0.99641 0.94137 0.92755 1.20938 1.08921 0.97282 0.95408 1.17522 0.88429 0.90861 0.92844 1.19590 1.41182 0.91160 0.96984 0.90272 1.25910 0.92996 0.98076 0.97301 1.69790 1.30849 1.08705 1.32604 0.86253 0.79744 0.79591 0.81135 1.18394 1.19637 1.19960 1.21154 1.02616 1.00858 0.90218 1.19777 1.06917 0.95340 0.92811 1.20337 0.87439 0.80233 0.86027 1.92937 1.62703 1.66751 1.96494 1.92899 1.94214 1.67358 1.64034 1.18624 1.11545 0.93553 0.93590 1.20476 0.97021 0.98484 0.94952 1.21836 0.99204 0.99901 0.98815 0.93679 0.92670 0.92824 0.91888 0.92399 0.88732 0.90797 0.85421 0.87979 0.92942 0.91974 0.93725 0.94221 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.75 37.16 0.36 -1.82 16 2 C -0.08 -1.36 5.36 -27.88 -0.15 -1.51 16 3 C -0.06 -1.19 5.13 -104.70 -0.54 -1.73 16 4 C -0.21 -4.88 9.42 -38.87 -0.37 -5.24 16 5 C 0.11 2.75 5.57 -106.82 -0.60 2.15 16 6 C -0.46 -11.95 9.06 -37.74 -0.34 -12.30 16 7 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 8 C 0.07 1.85 5.17 -17.34 -0.09 1.76 16 9 N -0.79 -20.15 10.91 55.55 0.61 -19.54 16 10 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 11 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 C -0.13 -3.28 8.03 -38.87 -0.31 -3.59 16 15 C -0.15 -3.34 5.73 -104.70 -0.60 -3.94 16 16 C 0.31 6.14 5.18 36.00 0.19 6.32 16 17 F -0.21 -4.36 16.47 2.25 0.04 -4.33 16 18 F -0.20 -3.79 11.64 2.25 0.03 -3.76 16 19 C -0.17 -3.64 5.13 -104.33 -0.54 -4.17 16 20 C -0.07 -1.28 4.57 -27.88 -0.13 -1.41 16 21 C -0.14 -2.32 9.09 37.16 0.34 -1.98 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.82 6.99 -51.93 -0.36 0.46 16 25 H 0.06 1.01 5.76 -51.93 -0.30 0.72 16 26 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 27 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 29 H 0.13 3.41 5.69 -52.49 -0.30 3.11 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.05 0.86 5.57 -51.93 -0.29 0.57 16 32 H 0.06 1.07 5.90 -51.93 -0.31 0.77 16 33 H 0.04 0.72 7.09 -51.93 -0.37 0.35 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.10 6.50 -51.93 -0.34 0.76 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -26.38 285.50 -7.17 -33.55 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.34 Total: 3.76 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.77 Total: -27.45 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.61 Total: -19.54 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.38 -7.17 -33.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.847 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds