Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46764 * 2 1 4 4 C 1.37634 * 119.87309 * 93.04681 * 3 2 1 5 5 C 1.40701 * 119.74516 * 180.02562 * 4 3 2 6 6 C 1.41398 * 120.24674 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99789 * 24.90927 * 6 5 4 8 8 C 1.39946 * 120.00008 * 204.90277 * 6 5 4 9 9 N 1.30826 * 119.99651 * 16.49796 * 8 6 5 10 10 Si 1.86798 * 119.99803 * 196.49578 * 8 6 5 11 11 H 1.48491 * 109.47164 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46815 * 120.00185 * 10 8 6 13 13 H 1.48498 * 109.47151 * 239.99927 * 10 8 6 14 14 C 1.40735 * 119.50779 * 359.97438 * 5 4 3 15 15 C 1.37598 * 119.74832 * 0.02562 * 14 5 4 16 16 C 1.50697 * 119.87579 * 180.02562 * 15 14 5 17 17 F 1.39901 * 109.47341 * 29.99898 * 16 15 14 18 18 F 1.39905 * 109.47147 * 149.99530 * 16 15 14 19 19 C 1.38609 * 119.87558 * 273.06943 * 3 2 1 20 20 C 1.50700 * 119.75132 * 359.97438 * 19 3 2 21 21 C 1.52998 * 109.47428 * 271.46920 * 20 19 3 22 22 H 1.09005 * 109.46456 * 183.71681 * 1 2 3 23 23 H 1.08996 * 109.47021 * 303.71400 * 1 2 3 24 24 H 1.08994 * 109.47386 * 63.72492 * 1 2 3 25 25 H 1.08999 * 109.47237 * 240.00847 * 2 1 3 26 26 H 1.08991 * 109.47382 * 119.99860 * 2 1 3 27 27 H 1.08001 * 120.13249 * 0.02562 * 4 3 2 28 28 H 0.97004 * 119.99572 * 179.97438 * 9 8 6 29 29 H 1.08002 * 120.12230 * 180.27353 * 14 5 4 30 30 H 1.08996 * 109.47078 * 269.99784 * 16 15 14 31 31 H 1.08997 * 109.46948 * 31.47491 * 20 19 3 32 32 H 1.09002 * 109.46884 * 151.46842 * 20 19 3 33 33 H 1.08998 * 109.46976 * 65.61759 * 21 20 19 34 34 H 1.09000 * 109.47281 * 185.61526 * 21 20 19 35 35 H 1.09003 * 109.47294 * 305.61643 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3205 2.0461 1.1918 5 6 2.7888 3.3729 1.1887 6 6 3.0887 4.0252 2.4068 7 1 3.3523 3.4456 3.2791 8 6 3.0441 5.4219 2.4821 9 7 2.4270 6.1076 1.5544 10 14 3.8657 6.3072 3.9071 11 1 4.4910 5.3114 4.8140 12 1 4.9102 7.2241 3.3841 13 1 2.8497 7.0898 4.6556 14 6 2.9574 4.0456 -0.0359 15 6 2.6630 3.4008 -1.2153 16 6 2.8430 4.1182 -2.5283 17 9 3.8800 5.0502 -2.4121 18 9 3.1594 3.1908 -3.5269 19 6 2.2017 2.0933 -1.2002 20 6 1.8827 1.3979 -2.4985 21 6 3.1228 0.6527 -2.9962 22 1 -0.3632 -1.0256 0.0666 23 1 -0.3633 0.5704 0.8548 24 1 -0.3634 0.4549 -0.9214 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.1879 1.5203 2.1258 28 1 2.3958 7.0757 1.6068 29 1 3.3205 5.0627 -0.0501 30 1 1.9191 4.6335 -2.7905 31 1 1.0711 0.6877 -2.3404 32 1 1.5799 2.1361 -3.2412 33 1 3.3666 -0.1513 -2.3017 34 1 2.9233 0.2332 -3.9822 35 1 3.9620 1.3454 -3.0591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575652712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -116.851468 kcal Electronic energy + Delta-G solvation = -19314.933675 eV Core-core repulsion = 16139.894376 eV Total energy + Delta-G solvation = -3175.039298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93191 -47.94704 -40.11340 -36.47212 -34.55499 -34.02364 -31.57452 -29.87482 -27.29692 -26.59373 -24.78055 -23.45505 -21.54941 -21.24838 -18.98975 -18.35196 -17.99278 -17.50487 -16.70418 -16.39506 -16.12042 -15.18784 -14.88024 -14.63352 -14.50371 -14.34787 -14.10503 -13.85874 -13.60492 -13.43425 -13.09464 -12.91214 -12.82939 -12.70232 -12.48512 -12.34542 -12.06073 -11.91560 -11.83147 -11.47752 -11.12672 -11.06121 -10.91408 -9.37685 -9.05665 -8.65052 -6.34211 0.78960 1.00762 1.36557 1.46580 1.51150 2.19157 2.63655 3.00537 3.46031 3.59122 3.89347 4.17053 4.22075 4.32552 4.35742 4.39859 4.64480 4.78535 4.84574 4.85916 5.04476 5.04628 5.09688 5.13292 5.16095 5.22073 5.41536 5.45217 5.50123 5.62080 5.67762 5.91564 6.09228 6.17972 6.35825 6.61791 6.91654 6.98128 8.32091 Molecular weight = 254.12amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.008312 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.974711 B = 3367.637834 C = 4460.395190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.058 4.058 4 C -0.222 4.222 5 C 0.074 3.926 6 C -0.499 4.499 7 H 0.074 0.926 8 C 0.035 3.965 9 N -0.825 5.825 10 Si 0.979 3.021 11 H -0.259 1.259 12 H -0.267 1.267 13 H -0.264 1.264 14 C -0.158 4.158 15 C -0.158 4.158 16 C 0.316 3.684 17 F -0.218 7.218 18 F -0.195 7.195 19 C -0.168 4.168 20 C -0.071 4.071 21 C -0.137 4.137 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -5.747 -5.756 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C -0.058 4.058 4 C -0.242 4.242 5 C 0.072 3.928 6 C -0.529 4.529 7 H 0.092 0.908 8 C -0.180 4.180 9 N -0.452 5.452 10 Si 0.800 3.200 11 H -0.183 1.183 12 H -0.191 1.191 13 H -0.189 1.189 14 C -0.178 4.178 15 C -0.159 4.159 16 C 0.263 3.737 17 F -0.200 7.200 18 F -0.176 7.176 19 C -0.169 4.169 20 C -0.108 4.108 21 C -0.194 4.194 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.175 -5.514 -5.850 8.328 hybrid contribution 0.550 0.906 0.873 1.373 sum -1.625 -4.608 -4.977 6.975 Atomic orbital electron populations 1.21680 0.94218 1.02078 1.01490 1.20523 0.96679 0.91780 1.02470 1.19572 0.98149 0.96229 0.91858 1.21136 1.09444 0.96868 0.96744 1.17874 0.89472 0.92173 0.93320 1.19802 1.43514 0.92367 0.97190 0.90797 1.26707 0.93029 0.98291 0.99969 1.69845 1.31769 1.09203 1.34334 0.85202 0.78770 0.78220 0.77819 1.18258 1.19137 1.18863 1.21029 1.04926 1.00438 0.91363 1.20159 1.06047 0.96229 0.93424 1.20438 0.88286 0.80098 0.84917 1.92916 1.63406 1.67111 1.96524 1.92914 1.94256 1.67114 1.63316 1.19165 1.09280 0.93028 0.95410 1.20550 0.98283 0.98979 0.92982 1.21784 0.97673 0.99435 1.00499 0.90471 0.94238 0.92621 0.90065 0.91766 0.88593 0.90200 0.87582 0.84742 0.90939 0.91191 0.93340 0.91408 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.75 71.98 0.70 -3.10 16 2 C -0.08 -2.45 5.36 29.85 0.16 -2.29 16 3 C -0.06 -2.41 5.13 -19.92 -0.10 -2.51 16 4 C -0.22 -10.77 9.42 22.73 0.21 -10.56 16 5 C 0.07 4.00 5.57 -21.29 -0.12 3.88 16 6 C -0.50 -27.22 9.06 23.46 0.21 -27.00 16 7 H 0.07 3.91 7.90 -2.91 -0.02 3.89 16 8 C 0.03 1.76 5.17 85.26 0.44 2.20 16 9 N -0.83 -43.44 10.91 21.83 0.24 -43.20 16 10 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 13 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 14 C -0.16 -8.33 8.03 22.73 0.18 -8.15 16 15 C -0.16 -7.14 5.73 -19.92 -0.11 -7.25 16 16 C 0.32 12.05 5.18 71.24 0.37 12.42 16 17 F -0.22 -9.19 16.47 44.97 0.74 -8.45 16 18 F -0.19 -6.82 11.64 44.97 0.52 -6.30 16 19 C -0.17 -6.87 5.13 -19.68 -0.10 -6.97 16 20 C -0.07 -2.28 4.57 29.85 0.14 -2.14 16 21 C -0.14 -4.05 9.09 71.98 0.65 -3.40 16 22 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.51 6.99 -2.39 -0.02 1.49 16 25 H 0.08 2.30 5.76 -2.39 -0.01 2.28 16 26 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 27 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 29 H 0.11 5.97 5.69 -2.91 -0.02 5.95 16 30 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 31 H 0.07 2.07 5.57 -2.39 -0.01 2.06 16 32 H 0.07 2.16 5.90 -2.39 -0.01 2.15 16 33 H 0.05 1.39 7.09 -2.39 -0.02 1.37 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.39 6.50 -2.39 -0.02 1.38 16 Total: -1.00 -58.79 285.50 7.27 -51.52 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.10 Total: 20.37 kcal Atomic # 6 Polarization: -57.52 SS G_CDS: 2.64 Total: -54.88 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.24 Total: -43.20 kcal Atomic # 9 Polarization: -16.01 SS G_CDS: 1.26 Total: -14.75 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -58.79 7.27 -51.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575652712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.328 kcal (2) G-P(sol) polarization free energy of solvation -58.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds