Wall clock time and date at job start Mon Mar 30 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47036 * 2 1 4 4 C 1.53002 * 109.46821 * 240.00073 * 2 1 3 5 5 C 1.50701 * 109.46710 * 184.99911 * 4 2 1 6 6 C 1.37669 * 119.60075 * 264.72596 * 5 4 2 7 7 C 1.38152 * 121.79417 * 179.76285 * 6 5 4 8 8 C 1.40531 * 120.42324 * 0.48491 * 7 6 5 9 9 C 1.40453 * 120.71627 * 179.75085 * 8 7 6 10 10 H 1.07997 * 120.00116 * 154.64919 * 9 8 7 11 11 C 1.40157 * 120.00243 * 334.64729 * 9 8 7 12 12 N 1.30736 * 120.00051 * 342.96024 * 11 9 8 13 13 Si 1.86795 * 120.00032 * 162.95322 * 11 9 8 14 14 H 1.48496 * 109.47077 * 94.66308 * 13 11 9 15 15 H 1.48498 * 109.47148 * 214.66451 * 13 11 9 16 16 H 1.48500 * 109.47244 * 334.66169 * 13 11 9 17 17 C 1.46873 * 118.56703 * 359.78168 * 8 7 6 18 18 C 1.39527 * 121.39143 * 180.02562 * 17 8 7 19 19 C 1.37695 * 119.55835 * 179.97438 * 18 17 8 20 20 C 1.39075 * 120.71477 * 0.02562 * 19 18 17 21 21 C 1.36333 * 120.93426 * 359.97438 * 20 19 18 22 22 C 1.40520 * 119.76595 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47723 * 60.00122 * 1 2 3 24 24 H 1.09007 * 109.47486 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47318 * 299.99868 * 1 2 3 26 26 H 1.09004 * 109.46972 * 120.00189 * 2 1 3 27 27 H 1.08995 * 109.47414 * 60.00039 * 3 2 1 28 28 H 1.08993 * 109.47081 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47205 * 300.00417 * 3 2 1 30 30 H 1.09002 * 109.46766 * 304.99809 * 4 2 1 31 31 H 1.09000 * 109.47031 * 64.99592 * 4 2 1 32 32 H 1.08001 * 119.10049 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.79193 * 180.27003 * 7 6 5 34 34 H 0.96997 * 120.00209 * 179.97438 * 12 11 9 35 35 H 1.08002 * 120.22143 * 359.97438 * 18 17 8 36 36 H 1.08000 * 119.64330 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.53259 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.11841 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.8294 -1.1889 6 6 4.3176 0.1153 -1.8222 7 6 5.6978 0.0628 -1.7921 8 6 6.3558 -0.9767 -1.1128 9 6 7.7586 -1.0389 -1.0826 10 1 8.2592 -1.5476 -0.2721 11 6 8.5088 -0.4408 -2.1043 12 7 7.9360 -0.1232 -3.2357 13 14 10.3272 -0.0975 -1.8493 14 1 11.1251 -1.2236 -2.3973 15 1 10.6968 1.1584 -2.5504 16 1 10.6051 0.0458 -0.3976 17 6 5.5448 -1.9970 -0.4357 18 6 6.1365 -3.0543 0.2563 19 6 5.3399 -3.9896 0.8780 20 6 3.9537 -3.8915 0.8227 21 6 3.3497 -2.8688 0.1534 22 6 4.1341 -1.8977 -0.4917 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6053 -1.7198 -1.2951 31 1 1.7515 -0.1583 -2.1370 32 1 3.8341 0.9212 -2.3543 33 1 6.2749 0.8236 -2.2967 34 1 8.4551 0.2911 -3.9426 35 1 7.2122 -3.1384 0.3041 36 1 5.7965 -4.8083 1.4144 37 1 3.3472 -4.6361 1.3168 38 1 2.2721 -2.8053 0.1192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584620574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:12 Heat of formation + Delta-G solvation = -6.977624 kcal Electronic energy + Delta-G solvation = -18356.906673 eV Core-core repulsion = 15740.861392 eV Total energy + Delta-G solvation = -2616.045281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65784 -37.63210 -36.96363 -35.03114 -33.02097 -30.70347 -30.12813 -28.70670 -27.88631 -25.53254 -23.74139 -23.23005 -21.74450 -20.62299 -19.09613 -17.73295 -17.61036 -16.69144 -16.29492 -15.61891 -15.05308 -14.92866 -14.79654 -14.48285 -14.00820 -13.84525 -13.71022 -13.37626 -13.17275 -12.96168 -12.87231 -12.59855 -12.46697 -12.36020 -12.09460 -11.87902 -11.73561 -11.54020 -11.35299 -11.16748 -10.94140 -10.91527 -10.09463 -9.09388 -8.80650 -8.46599 -6.24612 0.15637 0.68575 1.26385 1.35783 1.50345 1.67957 2.13683 2.46029 2.94755 3.79754 4.10720 4.11414 4.27990 4.31653 4.33508 4.43240 4.51436 4.74046 4.79998 4.81736 4.86711 4.91376 4.96709 5.01875 5.05854 5.13706 5.20035 5.25324 5.30037 5.38961 5.51308 5.58561 5.61231 5.70639 5.75232 5.84865 5.93267 6.10314 6.23074 6.36903 6.49119 6.69501 6.82049 6.99663 8.17733 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.006961 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.078973 B = 4021.710152 C = 5005.122387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.042 4.042 5 C -0.232 4.232 6 C -0.056 4.056 7 C -0.257 4.257 8 C 0.092 3.908 9 C -0.463 4.463 10 H 0.085 0.915 11 C 0.033 3.967 12 N -0.802 5.802 13 Si 0.986 3.014 14 H -0.259 1.259 15 H -0.264 1.264 16 H -0.256 1.256 17 C -0.145 4.145 18 C -0.091 4.091 19 C -0.180 4.180 20 C -0.113 4.113 21 C -0.152 4.152 22 C -0.016 4.016 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.293 0.707 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -1.084 4.556 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.079 4.079 5 C -0.233 4.233 6 C -0.074 4.074 7 C -0.277 4.277 8 C 0.089 3.911 9 C -0.490 4.490 10 H 0.103 0.897 11 C -0.185 4.185 12 N -0.425 5.425 13 Si 0.806 3.194 14 H -0.183 1.183 15 H -0.188 1.188 16 H -0.179 1.179 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.199 4.199 20 C -0.131 4.131 21 C -0.170 4.170 22 C -0.016 4.016 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.769 -0.985 4.301 8.080 hybrid contribution 1.149 0.393 -0.398 1.278 sum -5.620 -0.592 3.903 6.868 Atomic orbital electron populations 1.21801 0.93707 1.02058 1.02045 1.21051 0.96066 0.95903 0.97591 1.21789 1.00322 0.96328 1.01395 1.20249 0.90489 0.99728 0.97459 1.19338 0.95392 0.99364 1.09183 1.20544 0.93415 0.96908 0.96548 1.20928 0.93597 1.01473 1.11671 1.18965 0.93252 0.89252 0.89581 1.19829 0.91788 1.30045 1.07325 0.89658 1.26944 1.06247 0.92157 0.93173 1.69861 1.40883 1.28030 1.03726 0.85124 0.75146 0.79057 0.80089 1.18318 1.18844 1.17921 1.19533 0.93431 0.97279 1.04331 1.21212 0.99474 0.94146 0.96126 1.21116 0.94171 1.00618 1.03955 1.20968 0.94694 0.98241 0.99153 1.21102 0.99504 0.95549 1.00880 1.17985 0.91894 0.95182 0.96567 0.92360 0.92205 0.92037 0.92810 0.92258 0.94765 0.92637 0.92011 0.92570 0.88643 0.88700 0.89577 0.86963 0.84739 0.84037 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.09 -2.60 2.91 -10.79 -0.03 -2.63 16 3 C -0.14 -4.28 8.83 71.98 0.64 -3.65 16 4 C -0.04 -1.44 4.19 29.85 0.12 -1.31 16 5 C -0.23 -10.18 4.62 -19.41 -0.09 -10.27 16 6 C -0.06 -2.67 8.20 22.11 0.18 -2.49 16 7 C -0.26 -13.91 8.69 22.81 0.20 -13.71 16 8 C 0.09 5.07 5.72 -19.92 -0.11 4.96 16 9 C -0.46 -24.50 8.49 23.28 0.20 -24.30 16 10 H 0.09 4.29 6.73 -2.91 -0.02 4.27 16 11 C 0.03 1.62 5.16 85.32 0.44 2.06 16 12 N -0.80 -41.36 10.98 21.86 0.24 -41.12 16 13 Si 0.99 36.89 29.59 68.60 2.03 38.92 16 14 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 15 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 17 C -0.15 -7.34 5.90 -19.89 -0.12 -7.46 16 18 C -0.09 -4.09 9.46 22.45 0.21 -3.88 16 19 C -0.18 -6.68 10.02 22.34 0.22 -6.46 16 20 C -0.11 -3.90 9.95 22.03 0.22 -3.68 16 21 C -0.15 -5.82 9.11 22.38 0.20 -5.62 16 22 C -0.02 -0.75 5.74 -21.32 -0.12 -0.87 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.05 1.74 7.99 -2.38 -0.02 1.72 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.03 1.24 6.52 -2.39 -0.02 1.23 16 29 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.06 1.98 6.64 -2.39 -0.02 1.97 16 31 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16 32 H 0.10 4.17 8.03 -2.91 -0.02 4.15 16 33 H 0.09 5.36 6.20 -2.91 -0.02 5.35 16 34 H 0.29 13.52 8.29 -92.71 -0.77 12.75 16 35 H 0.11 4.89 6.66 -2.91 -0.02 4.87 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.13 4.31 6.42 -2.91 -0.02 4.29 16 Total: -1.00 -59.21 306.37 6.13 -53.08 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 1.04 Total: 30.90 kcal Atomic # 6 Polarization: -84.59 SS G_CDS: 2.82 Total: -81.77 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.24 Total: -41.12 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -59.21 6.13 -53.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584620574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.099 kcal (2) G-P(sol) polarization free energy of solvation -59.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds