Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34947 * 126.03929 * 2 1 4 4 C 1.35309 * 107.74582 * 180.15190 * 3 2 1 5 5 C 1.50699 * 126.03738 * 179.88028 * 4 3 2 6 6 S 1.81401 * 109.46970 * 269.70889 * 5 4 3 7 7 C 1.81400 * 103.00097 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47145 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47164 * 300.00298 * 8 7 6 10 10 C 1.52999 * 109.46623 * 60.00198 * 8 7 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.39870 * 107.91915 * 359.60950 * 4 3 2 20 20 N 1.30828 * 108.20241 * 0.24680 * 19 4 3 21 21 H 1.09007 * 109.47244 * 270.25507 * 1 2 3 22 22 H 1.08997 * 109.47153 * 30.25186 * 1 2 3 23 23 H 1.08996 * 109.47529 * 150.25521 * 1 2 3 24 24 H 1.07998 * 126.12364 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47312 * 149.71243 * 5 4 3 26 26 H 1.08998 * 109.47487 * 29.71274 * 5 4 3 27 27 H 1.09001 * 109.46713 * 60.00360 * 7 6 5 28 28 H 1.08993 * 109.47294 * 299.99893 * 7 6 5 29 29 H 1.09000 * 109.47140 * 60.00051 * 9 8 7 30 30 H 1.09001 * 109.47230 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.47375 * 300.00034 * 9 8 7 32 32 H 1.09001 * 109.47362 * 60.00551 * 10 8 7 33 33 H 1.09002 * 109.46716 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47486 * 299.99829 * 10 8 7 35 35 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 36 36 H 1.08009 * 125.89571 * 180.26252 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0072 6 16 5.2594 1.8900 -1.7190 7 6 6.7232 2.9426 -1.5192 8 6 7.2675 3.3261 -2.8968 9 6 7.6511 2.0594 -3.6643 10 6 6.1934 4.0886 -3.6751 11 6 8.4832 4.2011 -2.7308 12 1 8.8329 4.4576 -1.7416 13 6 9.1496 4.6733 -3.8416 14 7 8.7240 4.3605 -5.0461 15 14 10.6569 5.7572 -3.6358 16 1 10.9275 5.9594 -2.1897 17 1 11.8283 5.1020 -4.2714 18 1 10.4136 7.0716 -4.2828 19 6 3.5345 -0.7322 0.0035 20 7 2.2891 -1.1327 0.0054 21 1 -0.3634 0.0046 1.0277 22 1 -0.3633 0.8877 -0.5177 23 1 -0.3634 -0.8922 -0.5098 24 1 1.9281 2.1193 0.0004 25 1 5.5821 1.0364 0.5090 26 1 4.5441 2.4824 0.5024 27 1 7.4885 2.3991 -0.9650 28 1 6.4500 3.8448 -0.9720 29 1 6.7714 1.4270 -3.7844 30 1 8.0384 2.3326 -4.6459 31 1 8.4162 1.5162 -3.1098 32 1 5.9202 4.9911 -3.1283 33 1 6.5813 4.3623 -4.6564 34 1 5.3138 3.4562 -3.7952 35 1 9.1926 4.6930 -5.8275 36 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594905551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = 65.792285 kcal Electronic energy + Delta-G solvation = -16211.454350 eV Core-core repulsion = 13630.468217 eV Total energy + Delta-G solvation = -2580.986133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17052 -35.85015 -33.72343 -31.58455 -31.45019 -28.17202 -26.29290 -25.52922 -25.15332 -25.01444 -21.11071 -20.38788 -18.84682 -16.88131 -15.91850 -15.68142 -15.12732 -14.65046 -14.52064 -13.95405 -13.66446 -13.42891 -13.06482 -12.89768 -12.63834 -12.39155 -12.09997 -11.77053 -11.24303 -11.11589 -10.78062 -10.64637 -10.57834 -10.19972 -10.06489 -9.49725 -9.44455 -9.42949 -9.32760 -8.48926 -8.32563 -8.21349 -6.85515 -5.94187 -4.05463 1.74818 2.23849 2.47111 3.14941 3.29486 3.37798 3.41075 3.50453 4.40989 4.44151 4.79780 4.93000 5.05261 5.18073 5.21026 5.31415 5.40864 5.75464 5.85307 6.10044 6.11661 6.24378 6.60822 6.64742 6.92346 6.93767 7.07253 7.25196 7.26639 7.48612 7.65513 7.72590 7.77050 8.14624 8.26065 8.48112 8.94339 9.59496 11.06447 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.056167 B = 0.004003 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.394120 B = 6992.480984 C = 7048.854719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.069 3.931 4 C -0.211 4.211 5 C -0.018 4.018 6 S -0.265 6.265 7 C -0.056 4.056 8 C 0.081 3.919 9 C -0.131 4.131 10 C -0.130 4.130 11 C -0.505 4.505 12 H 0.054 0.946 13 C 0.066 3.934 14 N -0.883 5.883 15 Si 0.891 3.109 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.065 3.935 20 N -0.302 5.302 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.174 0.826 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.259 0.741 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 -5.764 9.582 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.080 4.080 4 C -0.224 4.224 5 C -0.167 4.167 6 S -0.036 6.036 7 C -0.205 4.205 8 C 0.080 3.920 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.545 4.545 12 H 0.073 0.927 13 C -0.135 4.135 14 N -0.521 5.521 15 Si 0.719 3.281 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.122 4.122 20 N -0.123 5.123 21 H 0.090 0.910 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.192 0.808 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.482 -7.084 8.470 18.211 hybrid contribution 1.968 1.824 1.233 2.953 sum -12.513 -5.259 9.703 16.685 Atomic orbital electron populations 1.21817 0.74355 1.04498 1.03092 1.48396 1.06529 1.03902 1.57427 1.22300 0.90739 0.93377 1.01549 1.19458 0.93355 0.93653 1.15916 1.21510 0.96584 1.00170 0.98413 1.87114 1.39450 1.67738 1.09276 1.23816 0.93834 0.97993 1.04807 1.17954 0.93578 0.93548 0.86942 1.21830 0.97794 0.96150 1.03075 1.21831 0.96187 0.97706 1.03097 1.21099 1.10690 1.30103 0.92620 0.92735 1.24890 0.97236 0.96143 0.95260 1.69848 1.39859 1.45023 0.97413 0.86555 0.83029 0.80359 0.78131 1.19897 1.21063 1.21076 1.23800 0.95141 0.94451 0.98828 1.77324 1.01649 1.08251 1.25107 0.90977 0.89483 0.89394 0.80835 0.90129 0.90469 0.91799 0.91867 0.95969 0.90017 0.95807 0.95862 0.90011 0.96016 0.93109 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.47 59.85 0.69 1.42 16 2 N -0.38 -4.51 4.01 -68.16 -0.27 -4.78 16 3 C 0.07 0.83 11.40 -17.23 -0.20 0.63 16 4 C -0.21 -2.89 5.36 -105.06 -0.56 -3.46 16 5 C -0.02 -0.26 6.42 36.01 0.23 -0.03 16 6 S -0.26 -4.93 18.77 -107.50 -2.02 -6.95 16 7 C -0.06 -1.18 4.88 37.16 0.18 -1.00 16 8 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 9 C -0.13 -3.22 8.01 37.16 0.30 -2.92 16 10 C -0.13 -3.19 8.01 37.16 0.30 -2.89 16 11 C -0.51 -13.51 8.01 -34.44 -0.28 -13.79 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 14 N -0.88 -24.41 9.35 55.43 0.52 -23.90 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.07 0.89 11.96 -17.37 -0.21 0.68 16 20 N -0.30 -4.28 12.57 30.62 0.39 -3.90 16 21 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 22 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 25 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 26 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.02 0.51 6.91 -51.93 -0.36 0.15 16 30 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 34 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.18 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -30.36 308.19 -7.03 -37.39 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.54 Total: -0.64 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 0.28 Total: -17.76 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.63 Total: -32.58 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.02 Total: -6.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.36 -7.03 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594905551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.181 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds