Wall clock time and date at job start Mon Mar 30 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34947 * 126.03929 * 2 1 4 4 C 1.35309 * 107.74582 * 180.15190 * 3 2 1 5 5 C 1.50699 * 126.03738 * 179.88028 * 4 3 2 6 6 S 1.81401 * 109.46970 * 269.70889 * 5 4 3 7 7 C 1.81400 * 103.00097 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47145 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47164 * 300.00298 * 8 7 6 10 10 C 1.52999 * 109.46623 * 60.00198 * 8 7 6 11 11 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.39870 * 107.91915 * 359.60950 * 4 3 2 20 20 N 1.30828 * 108.20241 * 0.24680 * 19 4 3 21 21 H 1.09007 * 109.47244 * 270.25507 * 1 2 3 22 22 H 1.08997 * 109.47153 * 30.25186 * 1 2 3 23 23 H 1.08996 * 109.47529 * 150.25521 * 1 2 3 24 24 H 1.07998 * 126.12364 * 0.02562 * 3 2 1 25 25 H 1.09007 * 109.47312 * 149.71243 * 5 4 3 26 26 H 1.08998 * 109.47487 * 29.71274 * 5 4 3 27 27 H 1.09001 * 109.46713 * 60.00360 * 7 6 5 28 28 H 1.08993 * 109.47294 * 299.99893 * 7 6 5 29 29 H 1.09000 * 109.47140 * 60.00051 * 9 8 7 30 30 H 1.09001 * 109.47230 * 179.97438 * 9 8 7 31 31 H 1.09001 * 109.47375 * 300.00034 * 9 8 7 32 32 H 1.09001 * 109.47362 * 60.00551 * 10 8 7 33 33 H 1.09002 * 109.46716 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47486 * 299.99829 * 10 8 7 35 35 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 36 36 H 1.08009 * 125.89571 * 180.26252 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0072 6 16 5.2594 1.8900 -1.7190 7 6 6.7232 2.9426 -1.5192 8 6 7.2675 3.3261 -2.8968 9 6 7.6511 2.0594 -3.6643 10 6 6.1934 4.0886 -3.6751 11 6 8.4832 4.2011 -2.7308 12 1 8.8329 4.4576 -1.7416 13 6 9.1496 4.6733 -3.8416 14 7 8.7240 4.3605 -5.0461 15 14 10.6569 5.7572 -3.6358 16 1 10.9275 5.9594 -2.1897 17 1 11.8283 5.1020 -4.2714 18 1 10.4136 7.0716 -4.2828 19 6 3.5345 -0.7322 0.0035 20 7 2.2891 -1.1327 0.0054 21 1 -0.3634 0.0046 1.0277 22 1 -0.3633 0.8877 -0.5177 23 1 -0.3634 -0.8922 -0.5098 24 1 1.9281 2.1193 0.0004 25 1 5.5821 1.0364 0.5090 26 1 4.5441 2.4824 0.5024 27 1 7.4885 2.3991 -0.9650 28 1 6.4500 3.8448 -0.9720 29 1 6.7714 1.4270 -3.7844 30 1 8.0384 2.3326 -4.6459 31 1 8.4162 1.5162 -3.1098 32 1 5.9202 4.9911 -3.1283 33 1 6.5813 4.3623 -4.6564 34 1 5.3138 3.4562 -3.7952 35 1 9.1926 4.6930 -5.8275 36 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594905551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:38 Heat of formation + Delta-G solvation = 49.481831 kcal Electronic energy + Delta-G solvation = -16212.161625 eV Core-core repulsion = 13630.468217 eV Total energy + Delta-G solvation = -2581.693407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10522 -37.77532 -34.57942 -33.47046 -32.57744 -29.06615 -27.88271 -27.51622 -27.11388 -26.14465 -22.01411 -21.42445 -20.70347 -17.96964 -17.73984 -16.85638 -16.58632 -16.20706 -15.43203 -15.33775 -15.14735 -14.74222 -14.43103 -14.13927 -13.78463 -13.44852 -13.35565 -13.22116 -13.07198 -12.87932 -12.61329 -12.41384 -12.17890 -12.01331 -11.63458 -11.37416 -11.19615 -11.10415 -10.37408 -10.36754 -10.29475 -9.24061 -8.32405 -7.97481 -6.15448 0.67935 1.09498 1.43534 1.46696 1.56309 1.69648 1.88188 2.23967 2.48707 3.25093 3.61854 3.96585 4.20189 4.31982 4.41024 4.43549 4.46424 4.48040 4.71112 4.75818 4.84015 4.86851 5.01283 5.12195 5.13149 5.30199 5.31035 5.51191 5.64070 5.69619 5.70826 6.11986 6.14657 6.26002 6.45642 6.70213 6.90940 7.52302 9.01386 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.056167 B = 0.004003 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.394120 B = 6992.480984 C = 7048.854719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.079 3.921 4 C -0.237 4.237 5 C 0.003 3.997 6 S -0.293 6.293 7 C -0.049 4.049 8 C 0.071 3.929 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.523 4.523 12 H 0.051 0.949 13 C 0.022 3.978 14 N -0.905 5.905 15 Si 0.950 3.050 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.055 3.945 20 N -0.332 5.332 21 H 0.090 0.910 22 H 0.112 0.888 23 H 0.089 0.911 24 H 0.204 0.796 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.258 0.742 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.226 -5.480 10.912 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.071 4.071 4 C -0.250 4.250 5 C -0.146 4.146 6 S -0.064 6.064 7 C -0.197 4.197 8 C 0.070 3.930 9 C -0.176 4.176 10 C -0.175 4.175 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.177 4.177 14 N -0.544 5.544 15 Si 0.776 3.224 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.132 4.132 20 N -0.154 5.154 21 H 0.109 0.891 22 H 0.131 0.869 23 H 0.108 0.892 24 H 0.220 0.780 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.621 -6.809 9.802 19.659 hybrid contribution 2.165 1.677 0.865 2.872 sum -13.456 -5.132 10.667 17.922 Atomic orbital electron populations 1.22212 0.71786 1.05901 1.04780 1.48811 1.08041 1.03268 1.55996 1.22786 0.90341 0.94624 0.99397 1.19498 0.93776 0.93565 1.18192 1.21466 0.97182 1.01179 0.94743 1.87116 1.38069 1.67079 1.14124 1.23479 0.95096 0.98739 1.02407 1.17967 0.93103 0.92995 0.88937 1.21664 0.97855 0.96496 1.01554 1.21655 0.96478 0.97817 1.01538 1.21417 1.11735 1.30605 0.92505 0.93034 1.25580 0.99721 0.97360 0.95087 1.69985 1.40784 1.45729 0.97886 0.85638 0.79888 0.78681 0.78175 1.19326 1.20994 1.20875 1.24066 0.95540 0.94922 0.98648 1.77275 1.02148 1.09756 1.26212 0.89133 0.86948 0.89194 0.77954 0.89369 0.88928 0.91845 0.91602 0.95091 0.92652 0.96124 0.95952 0.92697 0.95032 0.93227 0.78973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.47 127.77 1.47 2.50 16 2 N -0.38 -8.07 4.01 -369.57 -1.48 -9.56 16 3 C 0.08 1.66 11.40 83.54 0.95 2.62 16 4 C -0.24 -6.00 5.36 -20.15 -0.11 -6.10 16 5 C 0.00 0.07 6.42 71.24 0.46 0.53 16 6 S -0.29 -10.51 18.77 -56.49 -1.06 -11.57 16 7 C -0.05 -2.01 4.88 71.98 0.35 -1.66 16 8 C 0.07 3.48 0.52 -52.93 -0.03 3.45 16 9 C -0.12 -5.84 8.01 71.98 0.58 -5.27 16 10 C -0.12 -5.74 8.01 71.98 0.58 -5.16 16 11 C -0.52 -27.97 8.01 25.60 0.21 -27.77 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.02 1.17 5.15 84.65 0.44 1.61 16 14 N -0.90 -50.66 9.35 21.45 0.20 -50.46 16 15 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 C 0.05 1.43 11.96 85.24 1.02 2.45 16 20 N -0.33 -8.94 12.57 -57.02 -0.72 -9.66 16 21 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 22 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 23 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.03 1.43 6.91 -2.39 -0.02 1.42 16 30 H 0.05 3.03 6.07 -2.39 -0.01 3.01 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 34 H 0.03 1.44 6.91 -2.39 -0.02 1.42 16 35 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -64.49 308.19 5.92 -58.58 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.04 Total: 10.53 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 5.91 Total: -32.80 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -2.00 Total: -69.68 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -10.51 SS G_CDS: -1.06 Total: -11.57 kcal Total: -64.49 5.92 -58.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594905551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.057 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds