Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48495 * 109.47699 * 270.00599 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00776 * 3 2 1 6 6 H 1.48502 * 109.47145 * 150.00333 * 3 2 1 7 7 C 1.37878 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99564 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47006 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47199 * 179.97438 * 11 10 9 13 13 C 1.81399 * 103.00088 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46810 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.62081 * 55.00420 * 14 13 12 16 16 C 1.53296 * 109.62309 * 294.63755 * 14 13 12 17 17 C 1.50921 * 110.56098 * 168.04677 * 16 14 13 18 18 C 1.52073 * 111.39901 * 51.43432 * 17 16 14 19 19 H 1.09000 * 114.63785 * 195.87979 * 18 17 16 20 20 C 1.49176 * 119.09100 * 52.81753 * 18 17 16 21 21 C 1.52066 * 120.02189 * 341.03481 * 18 17 16 22 22 H 1.08998 * 117.25608 * 215.56209 * 21 18 17 23 23 C 1.52707 * 120.52162 * 5.28372 * 21 18 17 24 24 H 0.97002 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47357 * 59.99864 * 9 7 2 26 26 H 1.09000 * 109.47005 * 299.99489 * 9 7 2 27 27 H 1.08998 * 109.47280 * 60.00295 * 10 9 7 28 28 H 1.09000 * 109.46945 * 299.99661 * 10 9 7 29 29 H 1.09002 * 109.47348 * 59.99989 * 11 10 9 30 30 H 1.09000 * 109.46988 * 299.99630 * 11 10 9 31 31 H 1.09000 * 109.47070 * 300.00061 * 13 12 11 32 32 H 1.09001 * 109.46593 * 60.00058 * 13 12 11 33 33 H 1.09000 * 109.61624 * 285.56138 * 16 14 13 34 34 H 1.09004 * 109.61711 * 46.09812 * 16 14 13 35 35 H 1.09005 * 106.62036 * 292.30551 * 17 16 14 36 36 H 1.09001 * 110.96525 * 173.41931 * 17 16 14 37 37 H 1.09001 * 117.66336 * 142.06005 * 20 18 17 38 38 H 1.09000 * 117.01755 * 357.45729 * 20 18 17 39 39 H 1.09001 * 109.36155 * 216.70688 * 23 21 18 40 40 H 1.09006 * 109.35453 * 97.12038 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6364 -0.0009 12 16 6.1563 -4.3467 0.0000 13 6 7.9587 -4.1422 -0.0009 14 6 8.6280 -5.5180 0.0004 15 1 8.2583 -6.1057 -0.8399 16 6 8.3123 -6.2428 1.3138 17 6 8.7074 -7.6967 1.2251 18 6 10.1422 -7.8535 0.7462 19 1 10.4000 -8.8557 0.4038 20 6 11.2279 -7.1149 1.4541 21 6 10.8337 -6.7064 0.0263 22 1 11.5261 -6.9648 -0.7748 23 6 10.1433 -5.3518 -0.1167 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8744 -0.6800 -0.8912 27 1 3.6579 -3.1505 -0.8907 28 1 3.6585 -3.1501 0.8893 29 1 5.9149 -2.1225 0.8890 30 1 5.9149 -2.1227 -0.8910 31 1 8.2614 -3.5912 -0.8913 32 1 8.2620 -3.5901 0.8887 33 1 8.8974 -5.8056 2.1229 34 1 7.2492 -6.1506 1.5363 35 1 8.0346 -8.1591 0.5028 36 1 8.5941 -8.1912 2.1899 37 1 12.1827 -7.6237 1.5871 38 1 10.9285 -6.4547 2.2680 39 1 10.3856 -4.9236 -1.0893 40 1 10.4950 -4.6824 0.6684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596384048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -18.023793 kcal Electronic energy + Delta-G solvation = -16067.573675 eV Core-core repulsion = 13586.493348 eV Total energy + Delta-G solvation = -2481.080328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.140 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.07088 -34.75784 -34.54873 -32.07497 -31.48706 -28.17558 -27.62353 -24.49595 -23.22206 -21.60425 -21.47827 -20.10811 -18.66521 -16.81539 -16.58571 -15.84152 -15.09049 -14.59717 -14.53672 -14.26255 -14.21012 -14.00776 -13.10565 -13.00643 -12.57828 -12.46435 -12.15304 -12.00906 -12.00480 -11.48530 -11.20603 -11.02450 -10.99168 -10.85353 -10.66091 -10.08356 -10.03556 -9.91437 -9.78063 -9.62987 -9.50210 -9.21169 -8.54845 -7.43175 -6.04788 -4.03159 1.86191 2.85914 3.29684 3.37080 3.40034 3.48107 4.25882 4.44109 4.44498 4.54852 4.65134 4.79039 4.96444 5.04009 5.16626 5.23074 5.28387 5.39308 5.41487 5.47944 5.49283 5.51837 5.56150 5.62162 5.67368 5.84062 5.95277 6.00554 6.01416 6.03775 6.17442 6.22740 6.42363 6.51881 6.82732 7.25584 7.37777 7.76934 8.53130 9.00370 9.57076 11.08693 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.057783 B = 0.003158 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.453366 B = 8864.453234 C = 9147.890481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.087 4.087 11 C -0.079 4.079 12 S -0.271 6.271 13 C -0.084 4.084 14 C -0.065 4.065 15 H 0.081 0.919 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.135 4.135 19 H 0.096 0.904 20 C -0.183 4.183 21 C -0.151 4.151 22 H 0.102 0.898 23 C -0.080 4.080 24 H 0.263 0.737 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.384 -12.871 1.316 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.227 4.227 12 S -0.043 6.043 13 C -0.233 4.233 14 C -0.085 4.085 15 H 0.100 0.900 16 C -0.159 4.159 17 C -0.127 4.127 18 C -0.154 4.154 19 H 0.114 0.886 20 C -0.220 4.220 21 C -0.169 4.169 22 H 0.120 0.880 23 C -0.119 4.119 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.646 -13.692 1.325 26.497 hybrid contribution 1.157 2.078 -0.029 2.378 sum 23.804 -11.614 1.296 26.518 Atomic orbital electron populations 1.69914 1.06291 1.26894 1.51078 1.25030 0.94743 0.99157 0.94571 0.86769 0.80325 0.83633 0.78493 1.20278 1.21346 1.19075 1.21116 0.89310 0.94591 1.50855 0.90901 1.19572 0.97285 0.91504 0.96326 1.21268 0.88510 1.00412 1.02377 1.23627 1.02071 0.92883 1.04124 1.86845 1.03969 1.15495 1.97973 1.23408 0.94690 1.00668 1.04509 1.20863 0.94320 0.94028 0.99260 0.90025 1.21381 1.02646 0.95073 0.96803 1.20504 0.93624 0.97266 1.01356 1.21330 0.94368 0.96380 1.03278 0.88603 1.22649 0.99344 1.04554 0.95472 1.22163 1.03347 0.95939 0.95470 0.87960 1.21073 0.93779 0.94837 1.02194 0.92706 0.96533 0.96960 0.91825 0.91808 0.90699 0.90710 0.90372 0.90479 0.92525 0.89719 0.91770 0.91162 0.89256 0.88765 0.91402 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.18 4.04 -27.89 -0.11 -0.30 16 10 C -0.09 -1.76 5.16 -26.73 -0.14 -1.89 16 11 C -0.08 -1.30 5.94 37.16 0.22 -1.08 16 12 S -0.27 -4.00 20.41 -107.50 -2.19 -6.20 16 13 C -0.08 -0.94 5.39 37.16 0.20 -0.74 16 14 C -0.07 -0.64 2.19 -90.53 -0.20 -0.84 16 15 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 16 C -0.12 -1.19 4.88 -27.62 -0.13 -1.32 16 17 C -0.09 -0.78 5.89 -28.25 -0.17 -0.95 16 18 C -0.14 -1.08 5.91 -93.45 -0.55 -1.64 16 19 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.18 -1.38 9.50 -28.27 -0.27 -1.65 16 21 C -0.15 -1.19 6.29 -90.90 -0.57 -1.76 16 22 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 23 C -0.08 -0.66 5.13 -26.94 -0.14 -0.80 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 30 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.06 0.54 7.11 -51.93 -0.37 0.17 16 34 H 0.08 0.96 6.82 -51.93 -0.35 0.61 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.74 7.28 -51.93 -0.38 0.36 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -30.00 324.18 -10.86 -40.86 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.37 Total: -2.85 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -2.29 Total: -26.48 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.19 Total: -6.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.00 -10.86 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596384048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.833 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds