Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99901 * 2 1 4 4 H 1.48495 * 109.47699 * 270.00599 * 3 2 1 5 5 H 1.48504 * 109.47001 * 30.00776 * 3 2 1 6 6 H 1.48502 * 109.47145 * 150.00333 * 3 2 1 7 7 C 1.37878 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99564 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47006 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47199 * 179.97438 * 11 10 9 13 13 C 1.81399 * 103.00088 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46810 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.62081 * 55.00420 * 14 13 12 16 16 C 1.53296 * 109.62309 * 294.63755 * 14 13 12 17 17 C 1.50921 * 110.56098 * 168.04677 * 16 14 13 18 18 C 1.52073 * 111.39901 * 51.43432 * 17 16 14 19 19 H 1.09000 * 114.63785 * 195.87979 * 18 17 16 20 20 C 1.49176 * 119.09100 * 52.81753 * 18 17 16 21 21 C 1.52066 * 120.02189 * 341.03481 * 18 17 16 22 22 H 1.08998 * 117.25608 * 215.56209 * 21 18 17 23 23 C 1.52707 * 120.52162 * 5.28372 * 21 18 17 24 24 H 0.97002 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47357 * 59.99864 * 9 7 2 26 26 H 1.09000 * 109.47005 * 299.99489 * 9 7 2 27 27 H 1.08998 * 109.47280 * 60.00295 * 10 9 7 28 28 H 1.09000 * 109.46945 * 299.99661 * 10 9 7 29 29 H 1.09002 * 109.47348 * 59.99989 * 11 10 9 30 30 H 1.09000 * 109.46988 * 299.99630 * 11 10 9 31 31 H 1.09000 * 109.47070 * 300.00061 * 13 12 11 32 32 H 1.09001 * 109.46593 * 60.00058 * 13 12 11 33 33 H 1.09000 * 109.61624 * 285.56138 * 16 14 13 34 34 H 1.09004 * 109.61711 * 46.09812 * 16 14 13 35 35 H 1.09005 * 106.62036 * 292.30551 * 17 16 14 36 36 H 1.09001 * 110.96525 * 173.41931 * 17 16 14 37 37 H 1.09001 * 117.66336 * 142.06005 * 20 18 17 38 38 H 1.09000 * 117.01755 * 357.45729 * 20 18 17 39 39 H 1.09001 * 109.36155 * 216.70688 * 23 21 18 40 40 H 1.09006 * 109.35453 * 97.12038 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6364 -0.0009 12 16 6.1563 -4.3467 0.0000 13 6 7.9587 -4.1422 -0.0009 14 6 8.6280 -5.5180 0.0004 15 1 8.2583 -6.1057 -0.8399 16 6 8.3123 -6.2428 1.3138 17 6 8.7074 -7.6967 1.2251 18 6 10.1422 -7.8535 0.7462 19 1 10.4000 -8.8557 0.4038 20 6 11.2279 -7.1149 1.4541 21 6 10.8337 -6.7064 0.0263 22 1 11.5261 -6.9648 -0.7748 23 6 10.1433 -5.3518 -0.1167 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8744 -0.6800 -0.8912 27 1 3.6579 -3.1505 -0.8907 28 1 3.6585 -3.1501 0.8893 29 1 5.9149 -2.1225 0.8890 30 1 5.9149 -2.1227 -0.8910 31 1 8.2614 -3.5912 -0.8913 32 1 8.2620 -3.5901 0.8887 33 1 8.8974 -5.8056 2.1229 34 1 7.2492 -6.1506 1.5363 35 1 8.0346 -8.1591 0.5028 36 1 8.5941 -8.1912 2.1899 37 1 12.1827 -7.6237 1.5871 38 1 10.9285 -6.4547 2.2680 39 1 10.3856 -4.9236 -1.0893 40 1 10.4950 -4.6824 0.6684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596384048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -32.035700 kcal Electronic energy + Delta-G solvation = -16068.181277 eV Core-core repulsion = 13586.493348 eV Total energy + Delta-G solvation = -2481.687929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.140 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72769 -36.40368 -35.46441 -34.16199 -32.18538 -29.93964 -28.51161 -25.35919 -24.87838 -22.55574 -22.07662 -21.77516 -19.36021 -18.95683 -17.27870 -17.01101 -16.36735 -16.32907 -15.61669 -15.31491 -15.01821 -14.86348 -14.76740 -14.14264 -13.98924 -13.51441 -13.48396 -13.20023 -13.05162 -12.74316 -12.67177 -12.18546 -11.84811 -11.81078 -11.75047 -11.60576 -11.51462 -11.38548 -11.20236 -10.82826 -10.77672 -10.66106 -10.44678 -8.59753 -8.30289 -6.35598 0.73693 1.36172 1.38534 1.50470 1.73436 2.35993 2.88354 3.04801 3.56278 3.75699 3.85654 3.99581 4.03743 4.04031 4.10954 4.29362 4.33325 4.46352 4.47615 4.55560 4.70101 4.75509 4.77258 4.79598 4.84308 4.88049 4.94329 4.99448 5.03384 5.21003 5.27556 5.35060 5.38830 5.43183 5.43392 5.47971 5.51638 5.63385 6.26383 6.72251 7.28936 8.86844 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.057783 B = 0.003158 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.453366 B = 8864.453234 C = 9147.890481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.028 0.972 9 C -0.004 4.004 10 C -0.079 4.079 11 C -0.071 4.071 12 S -0.301 6.301 13 C -0.070 4.070 14 C -0.061 4.061 15 H 0.071 0.929 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.143 4.143 19 H 0.103 0.897 20 C -0.179 4.179 21 C -0.155 4.155 22 H 0.112 0.888 23 C -0.076 4.076 24 H 0.267 0.733 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.682 -12.020 1.292 29.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.043 4.043 10 C -0.117 4.117 11 C -0.219 4.219 12 S -0.073 6.073 13 C -0.218 4.218 14 C -0.080 4.080 15 H 0.089 0.911 16 C -0.157 4.157 17 C -0.127 4.127 18 C -0.161 4.161 19 H 0.121 0.879 20 C -0.215 4.215 21 C -0.173 4.173 22 H 0.130 0.870 23 C -0.115 4.115 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 25.953 -12.858 1.300 28.993 hybrid contribution 0.088 1.674 -0.015 1.677 sum 26.042 -11.184 1.285 28.371 Atomic orbital electron populations 1.70079 1.08462 1.28289 1.52510 1.26095 0.95688 1.03808 0.93938 0.85573 0.79526 0.77702 0.79322 1.18982 1.20973 1.16610 1.21487 0.92199 0.93116 1.50740 0.95388 1.19500 0.93805 0.94067 0.96974 1.21037 0.91659 0.97888 1.01162 1.23373 0.98922 0.94331 1.05264 1.87005 1.07931 1.14288 1.98099 1.23485 0.91070 1.01751 1.05517 1.20826 0.95428 0.93042 0.98743 0.91081 1.21329 1.01455 0.95935 0.97012 1.20481 0.94215 0.96474 1.01488 1.21350 0.93904 0.96969 1.03852 0.87889 1.22686 0.99544 1.04201 0.95110 1.22237 1.03446 0.95553 0.96065 0.86979 1.21049 0.92167 0.95344 1.02932 0.92420 0.95665 0.95770 0.93127 0.93135 0.89572 0.89491 0.89214 0.89523 0.92086 0.91645 0.92503 0.90731 0.88144 0.89047 0.90505 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.96 44.22 27.47 68.60 1.88 46.11 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C 0.00 -0.21 4.04 29.85 0.12 -0.08 16 10 C -0.08 -3.18 5.16 30.60 0.16 -3.02 16 11 C -0.07 -2.21 5.94 71.98 0.43 -1.78 16 12 S -0.30 -8.59 20.41 -56.49 -1.15 -9.74 16 13 C -0.07 -1.40 5.39 71.98 0.39 -1.02 16 14 C -0.06 -1.08 2.19 -10.73 -0.02 -1.10 16 15 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 16 C -0.12 -2.20 4.88 30.02 0.15 -2.05 16 17 C -0.09 -1.45 5.89 29.61 0.17 -1.28 16 18 C -0.14 -2.02 5.91 -12.63 -0.07 -2.09 16 19 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 20 C -0.18 -2.26 9.50 29.60 0.28 -1.98 16 21 C -0.15 -2.06 6.29 -10.98 -0.07 -2.13 16 22 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 23 C -0.08 -1.05 5.13 30.46 0.16 -0.90 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.06 7.11 -2.39 -0.02 1.04 16 34 H 0.06 1.46 6.82 -2.39 -0.02 1.44 16 35 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.22 7.28 -2.39 -0.02 1.20 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.95 8.06 -2.38 -0.02 0.93 16 Total: -1.00 -65.66 324.18 4.34 -61.32 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.91 Total: 11.25 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 2.40 Total: -48.42 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.30 Total: -60.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.15 Total: -9.74 kcal Total: -65.66 4.34 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596384048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.287 kcal (2) G-P(sol) polarization free energy of solvation -65.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds