Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46762 * 2 1 4 4 C 1.52996 * 109.47598 * 305.00206 * 3 2 1 5 5 O 1.42908 * 109.46705 * 65.00325 * 3 2 1 6 6 C 1.42898 * 113.99651 * 59.99900 * 5 3 2 7 7 C 1.50699 * 109.46994 * 184.99878 * 3 2 1 8 8 N 1.29950 * 126.28847 * 4.98473 * 7 3 2 9 9 O 1.21297 * 110.25309 * 179.97438 * 8 7 3 10 10 C 1.33645 * 109.80953 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.55106 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47318 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47238 * 300.02872 * 11 10 9 14 14 C 1.50699 * 109.46817 * 60.02702 * 11 10 9 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00270 * 180.02562 * 14 11 10 17 17 N 1.31522 * 119.99835 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46946 * 59.99892 * 18 16 14 20 20 H 1.48496 * 109.46933 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46921 * 299.99575 * 18 16 14 22 22 N 1.31129 * 106.89742 * 0.22680 * 10 9 8 23 23 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46945 * 299.99655 * 1 2 3 25 25 H 1.09000 * 109.47413 * 59.99539 * 1 2 3 26 26 H 1.09001 * 109.47166 * 240.01091 * 2 1 3 27 27 H 1.08991 * 109.47288 * 120.00193 * 2 1 3 28 28 H 1.08993 * 109.47296 * 300.00081 * 4 3 2 29 29 H 1.09006 * 109.46696 * 60.00003 * 4 3 2 30 30 H 1.08999 * 109.47403 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46852 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47435 * 299.99799 * 6 5 3 33 33 H 1.09000 * 109.47619 * 60.00168 * 6 5 3 34 34 H 1.09004 * 109.47261 * 59.99705 * 13 11 10 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46832 * 299.99686 * 13 11 10 37 37 H 0.96992 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4299 2.1993 -1.1815 5 8 1.6618 2.0814 1.2212 6 6 2.1824 1.4500 2.3927 7 6 3.5418 1.4444 -0.1238 8 7 4.2996 0.4050 -0.3080 9 8 5.4642 0.7393 -0.3655 10 6 5.5629 2.0641 -0.2197 11 6 6.8324 2.8761 -0.2299 12 1 6.5912 3.9294 -0.0871 13 6 7.7484 2.4047 0.9014 14 6 7.5333 2.6959 -1.5518 15 1 7.1026 2.0570 -2.3086 16 6 8.7247 3.3459 -1.7947 17 7 9.2493 4.1235 -0.8728 18 14 9.5931 3.1231 -3.4335 19 1 8.7041 3.5816 -4.5310 20 1 10.8441 3.9231 -3.4435 21 1 9.9211 1.6880 -3.6288 22 7 4.3444 2.5218 -0.0605 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.7182 1.7121 -2.1129 29 1 0.3435 2.1979 -1.0919 30 1 1.7928 3.2271 -1.1812 31 1 1.8508 1.9947 3.2767 32 1 1.8221 0.4225 2.4423 33 1 3.2717 1.4515 2.3528 34 1 7.9896 1.3514 0.7586 35 1 8.6668 2.9917 0.8937 36 1 7.2414 2.5351 1.8575 37 1 10.0877 4.5805 -1.0435 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596598836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -9.494641 kcal Electronic energy + Delta-G solvation = -19563.808163 eV Core-core repulsion = 16536.804473 eV Total energy + Delta-G solvation = -3027.003690 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.48937 -40.35648 -37.05593 -36.31559 -35.03357 -33.63786 -31.51562 -30.80573 -27.47175 -27.39079 -26.67875 -25.20862 -24.18832 -22.66366 -20.71709 -19.11099 -18.86063 -18.00467 -17.31850 -17.06167 -16.72234 -16.50667 -15.64045 -15.45656 -14.83608 -14.30933 -13.86224 -13.71623 -13.60101 -13.44249 -13.09390 -12.96518 -12.90682 -12.86557 -12.70512 -12.52123 -12.43989 -12.28507 -12.15635 -12.00815 -11.85291 -11.70354 -11.40036 -10.86746 -10.73690 -10.57467 -8.22689 -6.39737 0.19433 1.23507 1.46248 1.46626 1.55054 2.00860 2.37953 2.48562 2.64098 3.06003 3.17736 3.70549 3.75264 4.10609 4.24098 4.30158 4.34638 4.46570 4.58774 4.59676 4.65168 4.67766 4.76865 4.84016 4.87867 4.95981 4.96513 5.03352 5.05534 5.21171 5.38182 5.39103 5.62578 5.80793 5.95774 6.02363 6.61573 7.20670 7.29630 8.82980 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.036415 B = 0.005365 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.725495 B = 5217.537548 C = 5501.781976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.208 3.792 4 C -0.135 4.135 5 O -0.367 6.367 6 C 0.026 3.974 7 C 0.139 3.861 8 N -0.402 5.402 9 O 0.056 5.944 10 C 0.233 3.767 11 C 0.127 3.873 12 H 0.052 0.948 13 C -0.127 4.127 14 C -0.545 4.545 15 H 0.052 0.948 16 C 0.032 3.968 17 N -0.904 5.904 18 Si 0.963 3.037 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.269 1.269 22 N -0.514 5.514 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.009 0.991 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.725 -6.330 2.768 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.167 3.833 4 C -0.192 4.192 5 O -0.284 6.284 6 C -0.070 4.070 7 C -0.136 4.136 8 N -0.117 5.117 9 O 0.004 5.996 10 C 0.014 3.986 11 C 0.107 3.893 12 H 0.070 0.930 13 C -0.185 4.185 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.169 4.169 17 N -0.541 5.541 18 Si 0.788 3.212 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.194 1.194 22 N -0.248 5.248 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.306 -6.531 2.836 15.980 hybrid contribution 1.335 -0.051 -0.659 1.490 sum -12.970 -6.582 2.177 14.707 Atomic orbital electron populations 1.21761 0.91766 1.03068 1.03289 1.22023 0.99251 0.93002 1.03408 1.20032 0.79762 0.95720 0.87804 1.21841 1.03160 1.00085 0.94124 1.87986 1.72263 1.54840 1.13323 1.22906 0.96698 0.99347 0.88086 1.27121 1.01875 0.84105 1.00463 1.74507 0.89704 1.24581 1.22882 1.85232 1.22283 1.26348 1.65750 1.29952 0.97689 0.81393 0.89557 1.17626 0.82132 0.92056 0.97504 0.92984 1.21697 1.01466 1.00746 0.94607 1.20998 1.07590 1.30603 0.99127 0.92964 1.25579 0.97030 0.93850 1.00489 1.69931 1.20051 1.29341 1.34811 0.85522 0.77830 0.78602 0.79250 1.19983 1.20034 1.19418 1.71975 0.99940 1.29705 1.23210 0.90798 0.91817 0.90937 0.90776 0.91488 0.90610 0.87298 0.92532 0.86907 0.91722 0.97213 0.93915 0.89605 0.94812 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.32 71.98 0.67 -1.75 16 2 C -0.14 -3.35 4.33 30.60 0.13 -3.21 16 3 C 0.21 6.27 0.80 -11.54 -0.01 6.26 16 4 C -0.13 -3.53 8.34 71.98 0.60 -2.93 16 5 O -0.37 -11.03 9.87 -148.98 -1.47 -12.50 16 6 C 0.03 0.67 10.31 113.37 1.17 1.84 16 7 C 0.14 5.41 5.29 138.46 0.73 6.15 16 8 N -0.40 -16.49 11.41 -60.31 -0.69 -17.17 16 9 O 0.06 2.54 11.31 74.82 0.85 3.39 16 10 C 0.23 10.93 6.96 88.38 0.61 11.54 16 11 C 0.13 6.38 2.77 -12.29 -0.03 6.35 16 12 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 13 C -0.13 -5.85 8.95 71.98 0.64 -5.20 16 14 C -0.54 -29.10 8.55 25.60 0.22 -28.88 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.03 1.67 5.30 84.65 0.45 2.12 16 17 N -0.90 -48.33 11.32 21.45 0.24 -48.09 16 18 Si 0.96 41.47 29.54 68.60 2.03 43.50 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 N -0.51 -23.18 11.55 -303.18 -3.50 -26.68 16 23 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.06 1.08 7.82 -2.39 -0.02 1.06 16 25 H 0.07 1.09 6.34 -2.39 -0.02 1.07 16 26 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 27 H 0.07 1.65 6.29 -2.39 -0.02 1.64 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 2.13 6.35 -2.38 -0.02 2.12 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.06 1.42 6.31 -2.39 -0.02 1.41 16 33 H 0.01 0.30 7.15 -2.39 -0.02 0.28 16 34 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.09 4.25 6.07 -2.39 -0.01 4.23 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -59.02 304.64 3.70 -55.31 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.06 Total: 9.96 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.19 Total: -7.72 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -3.95 Total: -91.94 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.63 Total: -9.12 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -59.02 3.70 -55.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.819 kcal (2) G-P(sol) polarization free energy of solvation -59.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds