Wall clock time and date at job start Mon Mar 30 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53004 * 109.47229 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47182 * 300.00096 * 3 2 1 6 6 C 1.42898 * 113.99827 * 300.00192 * 5 3 2 7 7 C 1.50703 * 109.47223 * 60.00152 * 3 2 1 8 8 N 1.29948 * 126.28506 * 5.02257 * 7 3 2 9 9 O 1.21303 * 110.24669 * 179.97438 * 8 7 3 10 10 C 1.33643 * 109.81437 * 0.02562 * 9 8 7 11 11 C 1.50690 * 126.55005 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.47364 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47593 * 60.02468 * 11 10 9 14 14 C 1.50701 * 109.47525 * 300.02298 * 11 10 9 15 15 H 1.08002 * 119.99763 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00524 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99882 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00267 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47043 * 89.99733 * 18 16 14 20 20 H 1.48494 * 109.46858 * 209.99801 * 18 16 14 21 21 H 1.48502 * 109.46885 * 329.99759 * 18 16 14 22 22 N 1.31126 * 106.89467 * 0.02562 * 10 9 8 23 23 H 1.08996 * 109.47121 * 60.00057 * 1 2 3 24 24 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46997 * 299.99859 * 1 2 3 26 26 H 1.09001 * 109.46788 * 239.99652 * 2 1 3 27 27 H 1.09002 * 109.46748 * 120.00132 * 2 1 3 28 28 H 1.09002 * 109.46748 * 300.00132 * 4 3 2 29 29 H 1.09001 * 109.46788 * 59.99652 * 4 3 2 30 30 H 1.08996 * 109.47256 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47310 * 299.99393 * 6 5 3 32 32 H 1.08998 * 109.47370 * 59.99682 * 6 5 3 33 33 H 1.09005 * 109.47182 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46632 * 59.99432 * 13 11 10 35 35 H 1.08996 * 109.47770 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46998 * 300.00530 * 13 11 10 37 37 H 0.96996 * 120.00213 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9853 1.5198 -2.3950 7 6 1.5378 2.1529 1.2305 8 7 0.8644 1.6194 2.2055 9 8 0.6097 2.4556 3.0466 10 6 1.1112 3.6378 2.6765 11 6 1.0136 4.9329 3.4407 12 1 1.5190 5.7222 2.8841 13 6 1.6773 4.7688 4.8094 14 6 -0.4365 5.2987 3.6263 15 1 -1.2102 4.6572 3.2308 16 6 -0.7757 6.4522 4.3010 17 7 0.1663 7.2332 4.7831 18 14 -2.5732 6.9053 4.5317 19 1 -3.0744 6.3131 5.7979 20 1 -2.7078 8.3830 4.5890 21 1 -3.3663 6.3798 3.3914 22 7 1.7033 3.4557 1.5208 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9337 0.9285 0.8891 29 1 3.9330 0.9287 -0.8909 30 1 3.9334 2.4701 -0.0011 31 1 3.0742 1.5214 -2.4448 32 1 1.6209 0.4937 -2.4447 33 1 1.5822 2.0891 -3.2326 34 1 2.7261 4.5042 4.6751 35 1 1.6063 5.7054 5.3624 36 1 1.1720 3.9795 5.3660 37 1 -0.0722 8.0449 5.2574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596598839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:19 Heat of formation + Delta-G solvation = 14.453731 kcal Electronic energy + Delta-G solvation = -19571.658186 eV Core-core repulsion = 16545.692975 eV Total energy + Delta-G solvation = -3025.965211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.76113 -39.21093 -35.21871 -34.81673 -33.38899 -31.58677 -30.13284 -29.51986 -27.22620 -25.36480 -24.21842 -23.32855 -23.10866 -21.16517 -19.29411 -17.65170 -17.08912 -16.19866 -15.72049 -15.62794 -15.40065 -14.95773 -13.96215 -13.59642 -13.27768 -13.26263 -12.93759 -12.57713 -12.19126 -11.89229 -11.76713 -11.60795 -11.32761 -11.19087 -11.09433 -11.00321 -10.87030 -10.63232 -10.58324 -10.37013 -10.25541 -10.03898 -9.55779 -9.42895 -8.84691 -8.55038 -6.19902 -4.28863 1.94060 2.89631 3.25805 3.32248 3.37204 3.64198 3.88730 4.17612 4.34021 4.55814 4.75197 5.10496 5.18011 5.20282 5.24340 5.32930 5.42195 5.53015 5.58819 5.61968 5.76874 5.89077 5.96732 6.14314 6.16071 6.47671 6.54165 6.60316 6.70946 6.86660 6.88946 7.17044 7.40647 7.64251 7.82485 8.02595 8.70294 8.98270 9.37217 10.86385 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.005508 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.857058 B = 5081.965500 C = 5251.527951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.141 4.141 3 C 0.215 3.785 4 C -0.172 4.172 5 O -0.363 6.363 6 C 0.025 3.975 7 C 0.171 3.829 8 N -0.395 5.395 9 O 0.071 5.929 10 C 0.242 3.758 11 C 0.125 3.875 12 H 0.075 0.925 13 C -0.138 4.138 14 C -0.522 4.522 15 H 0.062 0.938 16 C 0.070 3.930 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.273 1.273 22 N -0.498 5.498 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.016 0.984 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 -11.205 -8.518 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.174 3.826 4 C -0.230 4.230 5 O -0.281 6.281 6 C -0.071 4.071 7 C -0.103 4.103 8 N -0.108 5.108 9 O 0.015 5.985 10 C 0.024 3.976 11 C 0.105 3.895 12 H 0.093 0.907 13 C -0.197 4.197 14 C -0.561 4.561 15 H 0.080 0.920 16 C -0.133 4.133 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.197 1.197 22 N -0.232 5.232 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.036 0.964 35 H 0.119 0.881 36 H 0.058 0.942 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.663 -11.577 -8.768 15.253 hybrid contribution -0.821 0.177 0.112 0.847 sum 3.842 -11.400 -8.656 14.821 Atomic orbital electron populations 1.21835 0.94497 1.01476 1.03407 1.22038 0.98090 0.94881 1.02878 1.19260 0.92882 0.89506 0.80992 1.22352 0.93860 1.04139 1.02654 1.88082 1.74054 1.53320 1.12628 1.22836 0.99409 0.98408 0.86454 1.24908 0.98995 0.89075 0.97277 1.74489 1.18342 1.15896 1.02026 1.85260 1.57851 1.16585 1.38844 1.30198 0.86348 0.91161 0.89942 1.17826 0.99080 0.81135 0.91487 0.90687 1.21854 0.95674 1.04003 0.98133 1.20877 0.89658 1.08134 1.37411 0.91962 1.24870 0.98190 0.95553 0.94671 1.69851 1.32262 1.13556 1.36548 0.86388 0.84105 0.77615 0.78804 1.20278 1.20928 1.19727 1.71942 1.24325 1.13848 1.13037 0.92591 0.92859 0.90878 0.90929 0.90389 0.91291 0.91247 0.90412 0.93605 0.93741 0.89430 0.96443 0.88074 0.94197 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.47 37.16 0.35 -1.86 16 2 C -0.14 -1.87 4.32 -26.73 -0.12 -1.98 16 3 C 0.21 3.40 0.79 -91.77 -0.07 3.33 16 4 C -0.17 -2.27 8.23 37.16 0.31 -1.96 16 5 O -0.36 -5.92 9.66 -35.23 -0.34 -6.26 16 6 C 0.03 0.28 10.21 101.05 1.03 1.31 16 7 C 0.17 3.45 6.32 -156.37 -0.99 2.46 16 8 N -0.39 -8.20 9.47 30.90 0.29 -7.90 16 9 O 0.07 1.59 11.31 18.10 0.20 1.79 16 10 C 0.24 5.65 6.96 -13.06 -0.09 5.56 16 11 C 0.13 3.09 2.77 -92.93 -0.26 2.83 16 12 H 0.08 1.97 8.14 -51.92 -0.42 1.55 16 13 C -0.14 -3.15 8.95 37.16 0.33 -2.82 16 14 C -0.52 -13.92 8.55 -34.44 -0.29 -14.21 16 15 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 16 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 17 N -0.88 -23.71 11.32 55.43 0.63 -23.08 16 18 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 N -0.50 -11.36 11.55 -9.87 -0.11 -11.47 16 23 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.26 5.70 -51.93 -0.30 0.97 16 26 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.43 6.41 -51.93 -0.33 0.10 16 32 H 0.04 0.42 6.42 -51.93 -0.33 0.08 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 302.57 15.07 4.56 4.56 Total: -1.00 -28.56 302.57 -4.96 -33.52 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.28 Total: -1.15 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.81 Total: -42.46 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.14 Total: -4.46 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.56 -4.96 -33.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.970 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds