Wall clock time and date at job start Mon Mar 30 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53004 * 109.47229 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47182 * 300.00096 * 3 2 1 6 6 C 1.42898 * 113.99827 * 300.00192 * 5 3 2 7 7 C 1.50703 * 109.47223 * 60.00152 * 3 2 1 8 8 N 1.29948 * 126.28506 * 5.02257 * 7 3 2 9 9 O 1.21303 * 110.24669 * 179.97438 * 8 7 3 10 10 C 1.33643 * 109.81437 * 0.02562 * 9 8 7 11 11 C 1.50690 * 126.55005 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.47364 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47593 * 60.02468 * 11 10 9 14 14 C 1.50701 * 109.47525 * 300.02298 * 11 10 9 15 15 H 1.08002 * 119.99763 * 0.02562 * 14 11 10 16 16 C 1.37872 * 120.00524 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99882 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00267 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47043 * 89.99733 * 18 16 14 20 20 H 1.48494 * 109.46858 * 209.99801 * 18 16 14 21 21 H 1.48502 * 109.46885 * 329.99759 * 18 16 14 22 22 N 1.31126 * 106.89467 * 0.02562 * 10 9 8 23 23 H 1.08996 * 109.47121 * 60.00057 * 1 2 3 24 24 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46997 * 299.99859 * 1 2 3 26 26 H 1.09001 * 109.46788 * 239.99652 * 2 1 3 27 27 H 1.09002 * 109.46748 * 120.00132 * 2 1 3 28 28 H 1.09002 * 109.46748 * 300.00132 * 4 3 2 29 29 H 1.09001 * 109.46788 * 59.99652 * 4 3 2 30 30 H 1.08996 * 109.47256 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47310 * 299.99393 * 6 5 3 32 32 H 1.08998 * 109.47370 * 59.99682 * 6 5 3 33 33 H 1.09005 * 109.47182 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46632 * 59.99432 * 13 11 10 35 35 H 1.08996 * 109.47770 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46998 * 300.00530 * 13 11 10 37 37 H 0.96996 * 120.00213 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9853 1.5198 -2.3950 7 6 1.5378 2.1529 1.2305 8 7 0.8644 1.6194 2.2055 9 8 0.6097 2.4556 3.0466 10 6 1.1112 3.6378 2.6765 11 6 1.0136 4.9329 3.4407 12 1 1.5190 5.7222 2.8841 13 6 1.6773 4.7688 4.8094 14 6 -0.4365 5.2987 3.6263 15 1 -1.2102 4.6572 3.2308 16 6 -0.7757 6.4522 4.3010 17 7 0.1663 7.2332 4.7831 18 14 -2.5732 6.9053 4.5317 19 1 -3.0744 6.3131 5.7979 20 1 -2.7078 8.3830 4.5890 21 1 -3.3663 6.3798 3.3914 22 7 1.7033 3.4557 1.5208 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9337 0.9285 0.8891 29 1 3.9330 0.9287 -0.8909 30 1 3.9334 2.4701 -0.0011 31 1 3.0742 1.5214 -2.4448 32 1 1.6209 0.4937 -2.4447 33 1 1.5822 2.0891 -3.2326 34 1 2.7261 4.5042 4.6751 35 1 1.6063 5.7054 5.3624 36 1 1.1720 3.9795 5.3660 37 1 -0.0722 8.0449 5.2574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596598839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:19 Heat of formation + Delta-G solvation = -4.430880 kcal Electronic energy + Delta-G solvation = -19572.477084 eV Core-core repulsion = 16545.692975 eV Total energy + Delta-G solvation = -3026.784109 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.44775 -40.34364 -37.04169 -36.44797 -34.80276 -33.35811 -31.29818 -31.22863 -28.15939 -27.37180 -25.54946 -25.10905 -24.39844 -22.76555 -20.72771 -19.29819 -18.66733 -18.10487 -17.21376 -16.95124 -16.59932 -16.46757 -15.63227 -14.96260 -14.78400 -14.32848 -14.28749 -13.85080 -13.60706 -13.30400 -13.11515 -13.06582 -12.86564 -12.84931 -12.68082 -12.50531 -12.30668 -12.28369 -12.11803 -12.00733 -11.83192 -11.73313 -11.30326 -10.68542 -10.57265 -10.53672 -8.22063 -6.38578 0.22628 1.24518 1.44821 1.46128 1.56163 2.03696 2.38759 2.42541 2.85377 3.08903 3.34239 3.57655 3.84778 4.15058 4.24904 4.33593 4.45606 4.49521 4.56819 4.63068 4.69521 4.73137 4.79779 4.86700 4.90714 4.92687 4.98817 5.04864 5.11526 5.13953 5.35974 5.41646 5.64841 5.83589 6.04406 6.15107 6.62726 7.24890 7.30533 8.83789 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.005508 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.857058 B = 5081.965500 C = 5251.527951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.207 3.793 4 C -0.167 4.167 5 O -0.398 6.398 6 C 0.017 3.983 7 C 0.174 3.826 8 N -0.393 5.393 9 O 0.055 5.945 10 C 0.232 3.768 11 C 0.127 3.873 12 H 0.052 0.948 13 C -0.126 4.126 14 C -0.544 4.544 15 H 0.049 0.951 16 C 0.032 3.968 17 N -0.904 5.904 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.277 1.277 22 N -0.516 5.516 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.985 -12.656 -9.642 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.166 3.834 4 C -0.225 4.225 5 O -0.317 6.317 6 C -0.078 4.078 7 C -0.100 4.100 8 N -0.108 5.108 9 O 0.003 5.997 10 C 0.013 3.987 11 C 0.107 3.893 12 H 0.070 0.930 13 C -0.185 4.185 14 C -0.583 4.583 15 H 0.068 0.932 16 C -0.169 4.169 17 N -0.541 5.541 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.202 1.202 22 N -0.250 5.250 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.911 -13.031 -9.874 17.071 hybrid contribution -0.873 0.598 0.355 1.116 sum 4.038 -12.433 -9.518 16.171 Atomic orbital electron populations 1.21807 0.95542 1.02381 1.01409 1.22064 0.97100 0.93349 1.04787 1.19622 0.94302 0.90040 0.79407 1.22347 0.91837 1.03560 1.04776 1.88025 1.74897 1.54712 1.14094 1.23130 1.00777 0.99440 0.84483 1.25865 0.97473 0.88232 0.98422 1.74501 1.18710 1.15357 1.02194 1.85243 1.58319 1.16474 1.39663 1.29884 0.87194 0.91219 0.90397 1.17624 0.98181 0.81348 0.92187 0.93006 1.21691 0.96723 1.03188 0.96855 1.21031 0.90368 1.08670 1.38206 0.93229 1.25563 1.01967 0.95258 0.94149 1.69934 1.33854 1.13775 1.36522 0.85479 0.79438 0.77624 0.78712 1.19322 1.20036 1.20163 1.71944 1.24663 1.15550 1.12800 0.92943 0.90502 0.94425 0.87098 0.90258 0.90842 0.87449 0.92343 0.91776 0.91764 0.88493 0.94546 0.89669 0.93864 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 9.47 71.98 0.68 -3.45 16 2 C -0.14 -3.19 4.32 30.59 0.13 -3.06 16 3 C 0.21 6.20 0.79 -11.54 -0.01 6.19 16 4 C -0.17 -4.00 8.23 71.98 0.59 -3.41 16 5 O -0.40 -12.33 9.66 -148.98 -1.44 -13.77 16 6 C 0.02 0.32 10.21 113.37 1.16 1.48 16 7 C 0.17 6.99 6.32 138.46 0.87 7.87 16 8 N -0.39 -16.42 9.47 -60.31 -0.57 -16.99 16 9 O 0.06 2.54 11.31 74.83 0.85 3.39 16 10 C 0.23 11.12 6.96 88.38 0.61 11.73 16 11 C 0.13 6.47 2.77 -12.29 -0.03 6.44 16 12 H 0.05 2.84 8.14 -2.38 -0.02 2.82 16 13 C -0.13 -5.84 8.95 71.98 0.64 -5.20 16 14 C -0.54 -29.72 8.55 25.60 0.22 -29.50 16 15 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 16 C 0.03 1.70 5.30 84.65 0.45 2.15 16 17 N -0.90 -48.79 11.32 21.45 0.24 -48.55 16 18 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 N -0.52 -23.91 11.55 -303.21 -3.50 -27.41 16 23 H 0.05 1.41 7.68 -2.39 -0.02 1.40 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.27 5.70 -2.39 -0.01 1.26 16 26 H 0.11 1.78 6.54 -2.39 -0.02 1.77 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.11 1.72 6.54 -2.39 -0.02 1.70 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 0.96 6.41 -2.39 -0.02 0.94 16 32 H 0.06 0.94 6.42 -2.39 -0.02 0.93 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.08 4.23 6.07 -2.39 -0.01 4.22 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -62.42 302.57 3.99 -58.43 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.06 Total: 9.35 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.32 Total: -8.77 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.83 Total: -92.94 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.59 Total: -10.38 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -62.42 3.99 -58.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596598839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.997 kcal (2) G-P(sol) polarization free energy of solvation -62.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds