Wall clock time and date at job start Mon Mar 30 2020 06:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.53000 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99853 * 4 3 2 6 6 O 1.42903 * 109.46726 * 294.99609 * 4 3 2 7 7 C 1.42909 * 113.99516 * 150.00349 * 6 4 3 8 8 C 1.50699 * 109.47083 * 174.99799 * 4 3 2 9 9 N 1.29953 * 126.28583 * 75.02124 * 8 4 3 10 10 O 1.21304 * 110.24664 * 179.97438 * 9 8 4 11 11 C 1.33639 * 109.81456 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.54958 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.46594 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.46785 * 60.03079 * 12 11 10 15 15 C 1.50696 * 109.47239 * 300.02420 * 12 11 10 16 16 H 1.08002 * 120.00435 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99759 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00325 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00191 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47235 * 60.00327 * 19 17 15 21 21 H 1.48495 * 109.47466 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46959 * 300.00446 * 19 17 15 23 23 N 1.31133 * 106.89652 * 359.76706 * 11 10 9 24 24 H 1.08998 * 109.46504 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47171 * 60.00211 * 1 2 3 27 27 H 1.09000 * 109.47044 * 239.99868 * 2 1 3 28 28 H 1.09001 * 109.47171 * 119.99789 * 2 1 3 29 29 H 1.08990 * 109.47398 * 60.00139 * 3 2 1 30 30 H 1.09001 * 109.47099 * 299.99832 * 3 2 1 31 31 H 1.08996 * 109.46835 * 299.99639 * 7 6 4 32 32 H 1.08994 * 109.47272 * 60.00221 * 7 6 4 33 33 H 1.09002 * 109.46835 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47343 * 179.97438 * 14 12 11 35 35 H 1.09005 * 109.47169 * 299.99176 * 14 12 11 36 36 H 1.09006 * 109.47686 * 59.99522 * 14 12 11 37 37 H 0.97000 * 120.00683 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 5.3065 0.2092 1.0988 8 6 4.0723 2.8580 -0.1245 9 7 4.0737 3.7583 0.8126 10 8 4.5443 4.7962 0.3968 11 6 4.8979 4.6524 -0.8839 12 6 5.5186 5.7039 -1.7671 13 1 5.6924 5.2882 -2.7597 14 6 6.8496 6.1562 -1.1633 15 6 4.5879 6.8844 -1.8729 16 1 3.6417 6.8745 -1.3523 17 6 4.9447 7.9776 -2.6335 18 7 6.0971 7.9899 -3.2671 19 14 3.7915 9.4412 -2.7641 20 1 3.5547 10.0071 -1.4117 21 1 4.4031 10.4773 -3.6345 22 1 2.4995 9.0026 -3.3504 23 7 4.6056 3.4200 -1.2238 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 5.2211 -0.6028 0.3769 32 1 6.0603 0.9195 0.7593 33 1 5.5990 -0.1949 2.0680 34 1 7.2988 6.9165 -1.8023 35 1 6.6757 6.5719 -0.1707 36 1 7.5228 5.3023 -1.0867 37 1 6.3481 8.7589 -3.8025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596602770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:19 Heat of formation + Delta-G solvation = -19.742319 kcal Electronic energy + Delta-G solvation = -18987.567325 eV Core-core repulsion = 15960.119262 eV Total energy + Delta-G solvation = -3027.448063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.47536 -39.72575 -37.07843 -36.41303 -35.63707 -33.83292 -31.73481 -30.50658 -27.42396 -27.37873 -26.06629 -25.24986 -23.70701 -22.20254 -21.47384 -19.13644 -18.62502 -18.08620 -17.76057 -16.80638 -16.69297 -16.38980 -15.71733 -15.59180 -14.85504 -14.49241 -14.31659 -13.77257 -13.55776 -13.29432 -13.11728 -13.06007 -12.86881 -12.77026 -12.60589 -12.39666 -12.29225 -12.15436 -12.01979 -11.92590 -11.85170 -11.55086 -11.38245 -11.06347 -10.71274 -10.56919 -8.22295 -6.39072 0.23340 1.22005 1.46447 1.47216 1.55383 2.03735 2.34261 2.44273 2.74394 3.07571 3.30475 3.73423 3.82656 4.08567 4.21635 4.29847 4.40876 4.42675 4.63117 4.66493 4.68408 4.72455 4.75156 4.84753 4.85481 4.95159 5.00790 5.02086 5.19624 5.29694 5.39376 5.43828 5.63572 5.81597 5.94579 6.03189 6.62137 7.23252 7.30262 8.83284 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.005079 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.703470 B = 5511.685821 C = 6178.108047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.108 4.108 4 C 0.189 3.811 5 H 0.107 0.893 6 O -0.379 6.379 7 C 0.022 3.978 8 C 0.135 3.865 9 N -0.398 5.398 10 O 0.056 5.944 11 C 0.233 3.767 12 C 0.127 3.873 13 H 0.056 0.944 14 C -0.128 4.128 15 C -0.545 4.545 16 H 0.051 0.949 17 C 0.033 3.967 18 N -0.903 5.903 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.274 1.274 23 N -0.520 5.520 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 -14.017 4.860 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.146 4.146 4 C 0.128 3.872 5 H 0.125 0.875 6 O -0.296 6.296 7 C -0.074 4.074 8 C -0.139 4.139 9 N -0.112 5.112 10 O 0.003 5.997 11 C 0.015 3.985 12 C 0.107 3.893 13 H 0.074 0.926 14 C -0.186 4.186 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.168 4.168 18 N -0.541 5.541 19 Si 0.787 3.213 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.199 1.199 23 N -0.255 5.255 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.881 -14.405 5.465 16.161 hybrid contribution -0.025 1.235 -0.437 1.311 sum -4.905 -13.169 5.028 14.926 Atomic orbital electron populations 1.21762 0.94718 1.02571 1.01793 1.21432 0.96661 0.93620 1.03192 1.21708 0.89886 1.00311 1.02723 1.20490 0.95714 0.81755 0.89207 0.87517 1.87976 1.37924 1.72298 1.31429 1.23077 0.83790 0.95933 1.04585 1.27137 0.99833 1.01550 0.85411 1.74541 1.18497 0.93988 1.24197 1.85266 1.56869 1.30478 1.27051 1.29925 0.91657 0.93616 0.83315 1.17649 0.93596 0.87534 0.90570 0.92587 1.21707 0.95578 1.00866 1.00458 1.21000 1.03772 1.01358 1.32247 0.93050 1.25553 0.96756 1.00516 0.94023 1.69921 1.21745 1.31730 1.30668 0.85542 0.78825 0.78524 0.78429 1.19564 1.19987 1.19949 1.71941 1.19999 1.06175 1.27413 0.91013 0.93042 0.92763 0.90649 0.90898 0.91923 0.90715 0.91028 0.95915 0.87234 0.89544 0.94070 0.94654 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.79 16 2 C -0.11 -2.10 5.83 30.60 0.18 -1.93 16 3 C -0.11 -2.80 4.90 30.60 0.15 -2.65 16 4 C 0.19 5.60 2.66 29.85 0.08 5.68 16 5 H 0.11 2.77 7.79 -2.39 -0.02 2.75 16 6 O -0.38 -10.78 9.87 -148.98 -1.47 -12.25 16 7 C 0.02 0.48 10.81 113.37 1.23 1.70 16 8 C 0.13 5.33 7.06 138.46 0.98 6.31 16 9 N -0.40 -17.29 12.16 -60.30 -0.73 -18.02 16 10 O 0.06 2.59 11.31 74.87 0.85 3.44 16 11 C 0.23 10.94 6.96 88.38 0.61 11.55 16 12 C 0.13 6.31 2.77 -12.29 -0.03 6.27 16 13 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 14 C -0.13 -5.85 8.95 71.98 0.64 -5.21 16 15 C -0.55 -29.05 8.55 25.60 0.22 -28.84 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C 0.03 1.72 5.30 84.65 0.45 2.17 16 18 N -0.90 -47.94 11.32 21.45 0.24 -47.70 16 19 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.52 -22.88 11.55 -303.18 -3.50 -26.38 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.36 7.82 -2.39 -0.02 1.34 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 4.24 6.07 -2.38 -0.01 4.23 16 35 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -58.98 316.14 3.67 -55.31 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.04 Total: 8.89 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.22 Total: -6.73 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -3.99 Total: -92.10 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.62 Total: -8.81 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -58.98 3.67 -55.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596602770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.573 kcal (2) G-P(sol) polarization free energy of solvation -58.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds