Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.53000 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99853 * 4 3 2 6 6 O 1.42903 * 109.46726 * 294.99609 * 4 3 2 7 7 C 1.42909 * 113.99516 * 150.00349 * 6 4 3 8 8 C 1.50699 * 109.47083 * 174.99799 * 4 3 2 9 9 N 1.29953 * 126.28583 * 75.02124 * 8 4 3 10 10 O 1.21304 * 110.24664 * 179.97438 * 9 8 4 11 11 C 1.33639 * 109.81456 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.54958 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46658 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.47356 * 299.97878 * 12 11 10 15 15 C 1.50697 * 109.46979 * 59.98002 * 12 11 10 16 16 H 1.08006 * 119.99916 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00306 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99423 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00182 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46952 * 59.99863 * 19 17 15 21 21 H 1.48505 * 109.46777 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.46927 * 299.99515 * 19 17 15 23 23 N 1.31133 * 106.89652 * 359.76706 * 11 10 9 24 24 H 1.08998 * 109.46504 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47171 * 60.00211 * 1 2 3 27 27 H 1.09000 * 109.47044 * 239.99868 * 2 1 3 28 28 H 1.09001 * 109.47171 * 119.99789 * 2 1 3 29 29 H 1.08990 * 109.47398 * 60.00139 * 3 2 1 30 30 H 1.09001 * 109.47099 * 299.99832 * 3 2 1 31 31 H 1.09002 * 109.46835 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.46835 * 299.99639 * 7 6 4 33 33 H 1.08994 * 109.47272 * 60.00221 * 7 6 4 34 34 H 1.08998 * 109.47210 * 180.02562 * 14 12 11 35 35 H 1.09001 * 109.46976 * 299.99851 * 14 12 11 36 36 H 1.09003 * 109.47379 * 59.99630 * 14 12 11 37 37 H 0.97001 * 119.99559 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 5.3065 0.2092 1.0988 8 6 4.0723 2.8580 -0.1245 9 7 4.0737 3.7583 0.8126 10 8 4.5443 4.7962 0.3968 11 6 4.8979 4.6524 -0.8839 12 6 5.5186 5.7039 -1.7671 13 1 5.6933 5.2879 -2.7594 14 6 4.5732 6.9019 -1.8754 15 6 6.8290 6.1503 -1.1717 16 1 7.1773 5.7163 -0.2461 17 6 7.5833 7.1128 -1.8086 18 7 7.1594 7.6409 -2.9360 19 14 9.2074 7.6666 -1.0702 20 1 10.1249 6.5039 -0.9639 21 1 9.8197 8.7018 -1.9413 22 1 8.9687 8.2341 0.2811 23 7 4.6056 3.4200 -1.2238 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 5.5990 -0.1949 2.0680 32 1 5.2211 -0.6028 0.3769 33 1 6.0603 0.9195 0.7593 34 1 5.0220 7.6623 -2.5146 35 1 3.6254 6.5790 -2.3061 36 1 4.3984 7.3178 -0.8832 37 1 7.6902 8.3177 -3.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596602776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = -2.323349 kcal Electronic energy + Delta-G solvation = -18982.434130 eV Core-core repulsion = 15955.741410 eV Total energy + Delta-G solvation = -3026.692720 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.75889 -38.54322 -35.28052 -34.92410 -34.40317 -32.01193 -30.12908 -29.17634 -26.42083 -25.39969 -24.81448 -23.44029 -22.13691 -21.22717 -19.82581 -17.42341 -16.96109 -16.62686 -16.04366 -15.37787 -15.28503 -14.96785 -14.77875 -13.78290 -13.48928 -13.41399 -12.94066 -12.42691 -12.13961 -11.87358 -11.73529 -11.64779 -11.27220 -11.18272 -11.10542 -11.01904 -10.76413 -10.67711 -10.62348 -10.41356 -10.30744 -10.11470 -9.88827 -9.49136 -8.90042 -8.58509 -6.23531 -4.33009 1.98496 2.89861 3.24627 3.28654 3.32724 3.60322 3.83453 4.12988 4.29674 4.77556 4.86460 4.93957 5.00517 5.10366 5.20345 5.34766 5.36672 5.54357 5.56983 5.66173 5.69797 5.79832 5.94972 6.00555 6.12101 6.24234 6.48133 6.55418 6.65196 6.82540 6.85514 7.07641 7.36649 7.60729 7.78460 7.98860 8.65879 8.97551 9.33264 10.82650 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.004828 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.998748 B = 5798.664041 C = 6289.109470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.110 4.110 4 C 0.189 3.811 5 H 0.089 0.911 6 O -0.369 6.369 7 C 0.028 3.972 8 C 0.124 3.876 9 N -0.385 5.385 10 O 0.072 5.928 11 C 0.242 3.758 12 C 0.125 3.875 13 H 0.075 0.925 14 C -0.138 4.138 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.071 3.929 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.513 5.513 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.017 0.983 36 H 0.039 0.961 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -11.612 3.544 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.129 3.871 5 H 0.107 0.893 6 O -0.286 6.286 7 C -0.068 4.068 8 C -0.150 4.150 9 N -0.096 5.096 10 O 0.015 5.985 11 C 0.024 3.976 12 C 0.105 3.895 13 H 0.093 0.907 14 C -0.197 4.197 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.199 1.199 23 N -0.248 5.248 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.132 -11.990 4.119 15.062 hybrid contribution 1.263 0.468 0.061 1.348 sum -6.869 -11.523 4.180 14.051 Atomic orbital electron populations 1.21760 0.95664 1.01513 1.01935 1.21475 0.95897 0.95921 1.02481 1.21693 0.91312 0.98233 1.03607 1.20170 0.94554 0.84122 0.88256 0.89344 1.87973 1.36726 1.72291 1.31574 1.22849 0.85551 0.95939 1.02473 1.26257 1.01794 1.00195 0.86726 1.74548 1.17651 0.93986 1.23401 1.85283 1.56363 1.29712 1.27139 1.30177 0.90361 0.93977 0.83127 1.17823 0.93297 0.86346 0.92034 0.90737 1.21854 0.95917 1.00297 1.01619 1.20834 1.02969 1.23216 1.09303 0.92049 1.24871 0.98258 0.95451 0.94655 1.69844 1.38399 1.27678 1.16225 0.86444 0.82772 0.78475 0.79200 1.20060 1.20938 1.19852 1.71933 1.19589 1.06335 1.26922 0.92729 0.92650 0.92728 0.92005 0.91108 0.90499 0.90212 0.89387 0.93658 0.93922 0.88057 0.96421 0.94158 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.24 5.83 -26.72 -0.16 -1.40 16 3 C -0.11 -1.45 4.90 -26.73 -0.13 -1.58 16 4 C 0.19 2.95 2.66 -27.88 -0.07 2.87 16 5 H 0.09 1.26 7.79 -51.93 -0.40 0.85 16 6 O -0.37 -5.69 9.87 -35.23 -0.35 -6.03 16 7 C 0.03 0.36 10.81 101.05 1.09 1.45 16 8 C 0.12 2.48 7.06 -156.37 -1.10 1.38 16 9 N -0.38 -8.34 12.16 30.90 0.38 -7.97 16 10 O 0.07 1.65 11.31 18.11 0.20 1.85 16 11 C 0.24 5.60 6.96 -13.05 -0.09 5.51 16 12 C 0.13 3.06 2.77 -92.93 -0.26 2.81 16 13 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 14 C -0.14 -3.15 8.95 37.15 0.33 -2.81 16 15 C -0.52 -13.83 8.55 -34.44 -0.29 -14.12 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 18 N -0.88 -23.46 11.32 55.43 0.63 -22.83 16 19 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 N -0.51 -11.31 11.55 -9.86 -0.11 -11.42 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -28.00 316.14 -5.66 -33.66 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.74 Total: -2.22 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.41 Total: -5.14 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.89 Total: -42.22 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.14 Total: -4.18 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.00 -5.66 -33.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596602776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.333 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds