Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.53000 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99853 * 4 3 2 6 6 O 1.42903 * 109.46726 * 294.99609 * 4 3 2 7 7 C 1.42909 * 113.99516 * 150.00349 * 6 4 3 8 8 C 1.50699 * 109.47083 * 174.99799 * 4 3 2 9 9 N 1.29953 * 126.28583 * 75.02124 * 8 4 3 10 10 O 1.21304 * 110.24664 * 179.97438 * 9 8 4 11 11 C 1.33639 * 109.81456 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.54958 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46658 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.47356 * 299.97878 * 12 11 10 15 15 C 1.50697 * 109.46979 * 59.98002 * 12 11 10 16 16 H 1.08006 * 119.99916 * 359.97438 * 15 12 11 17 17 C 1.37875 * 120.00306 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99423 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00182 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46952 * 59.99863 * 19 17 15 21 21 H 1.48505 * 109.46777 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.46927 * 299.99515 * 19 17 15 23 23 N 1.31133 * 106.89652 * 359.76706 * 11 10 9 24 24 H 1.08998 * 109.46504 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47171 * 60.00211 * 1 2 3 27 27 H 1.09000 * 109.47044 * 239.99868 * 2 1 3 28 28 H 1.09001 * 109.47171 * 119.99789 * 2 1 3 29 29 H 1.08990 * 109.47398 * 60.00139 * 3 2 1 30 30 H 1.09001 * 109.47099 * 299.99832 * 3 2 1 31 31 H 1.09002 * 109.46835 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.46835 * 299.99639 * 7 6 4 33 33 H 1.08994 * 109.47272 * 60.00221 * 7 6 4 34 34 H 1.08998 * 109.47210 * 180.02562 * 14 12 11 35 35 H 1.09001 * 109.46976 * 299.99851 * 14 12 11 36 36 H 1.09003 * 109.47379 * 59.99630 * 14 12 11 37 37 H 0.97001 * 119.99559 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 5.3065 0.2092 1.0988 8 6 4.0723 2.8580 -0.1245 9 7 4.0737 3.7583 0.8126 10 8 4.5443 4.7962 0.3968 11 6 4.8979 4.6524 -0.8839 12 6 5.5186 5.7039 -1.7671 13 1 5.6933 5.2879 -2.7594 14 6 4.5732 6.9019 -1.8754 15 6 6.8290 6.1503 -1.1717 16 1 7.1773 5.7163 -0.2461 17 6 7.5833 7.1128 -1.8086 18 7 7.1594 7.6409 -2.9360 19 14 9.2074 7.6666 -1.0702 20 1 10.1249 6.5039 -0.9639 21 1 9.8197 8.7018 -1.9413 22 1 8.9687 8.2341 0.2811 23 7 4.6056 3.4200 -1.2238 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 5.5990 -0.1949 2.0680 32 1 5.2211 -0.6028 0.3769 33 1 6.0603 0.9195 0.7593 34 1 5.0220 7.6623 -2.5146 35 1 3.6254 6.5790 -2.3061 36 1 4.3984 7.3178 -0.8832 37 1 7.6902 8.3177 -3.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596602776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = -19.883228 kcal Electronic energy + Delta-G solvation = -18983.195584 eV Core-core repulsion = 15955.741410 eV Total energy + Delta-G solvation = -3027.454173 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.47566 -39.72973 -37.07936 -36.41630 -35.63179 -33.83552 -31.73721 -30.50390 -27.44108 -27.37907 -26.05899 -25.24955 -23.70860 -22.20595 -21.44853 -19.18481 -18.61026 -18.04230 -17.79005 -16.81170 -16.70031 -16.40233 -15.71242 -15.59523 -14.85913 -14.50506 -14.30771 -13.76566 -13.55222 -13.28152 -13.17624 -13.00529 -12.87838 -12.79287 -12.59413 -12.35276 -12.30199 -12.16972 -12.00392 -11.94629 -11.88012 -11.54523 -11.36155 -11.07102 -10.71977 -10.57350 -8.22996 -6.39812 0.23319 1.21724 1.45504 1.46387 1.54579 2.03767 2.34801 2.43238 2.73646 3.06899 3.30397 3.74024 3.82938 4.09420 4.21985 4.29734 4.39455 4.40995 4.63801 4.67249 4.68841 4.72380 4.74595 4.85180 4.86152 4.95721 5.01341 5.02645 5.20839 5.30666 5.39352 5.44820 5.63421 5.81617 5.93474 6.03131 6.61307 7.23206 7.29487 8.82569 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.004828 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.998748 B = 5798.664041 C = 6289.109470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.106 4.106 4 C 0.187 3.813 5 H 0.106 0.894 6 O -0.380 6.380 7 C 0.023 3.977 8 C 0.135 3.865 9 N -0.398 5.398 10 O 0.056 5.944 11 C 0.233 3.767 12 C 0.127 3.873 13 H 0.056 0.944 14 C -0.127 4.127 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.033 3.967 18 N -0.903 5.903 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.271 1.271 23 N -0.520 5.520 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.018 0.982 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 -12.883 3.794 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.144 4.144 4 C 0.127 3.873 5 H 0.123 0.877 6 O -0.297 6.297 7 C -0.073 4.073 8 C -0.139 4.139 9 N -0.112 5.112 10 O 0.003 5.997 11 C 0.015 3.985 12 C 0.107 3.893 13 H 0.074 0.926 14 C -0.186 4.186 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.540 5.540 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.196 1.196 23 N -0.255 5.255 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.345 -13.243 4.372 16.252 hybrid contribution 1.318 0.786 -0.015 1.535 sum -7.027 -12.457 4.356 14.951 Atomic orbital electron populations 1.21756 0.94580 1.02552 1.01883 1.21440 0.96759 0.93742 1.03108 1.21703 0.89520 1.00263 1.02923 1.20530 0.95950 0.81728 0.89114 0.87666 1.87970 1.37788 1.72312 1.31583 1.23064 0.83805 0.95886 1.04586 1.27141 0.99763 1.01612 0.85419 1.74539 1.18631 0.94120 1.23925 1.85265 1.56930 1.30519 1.26950 1.29926 0.90958 0.94257 0.83374 1.17649 0.93331 0.87105 0.91264 0.92587 1.21702 0.96273 0.99196 1.01422 1.21003 1.04239 1.23959 1.09292 0.93167 1.25553 1.01073 0.95259 0.94955 1.69926 1.39422 1.27787 1.16856 0.85546 0.79059 0.78128 0.78619 1.19981 1.19927 1.19563 1.71943 1.19786 1.05982 1.27821 0.91144 0.92993 0.92562 0.90710 0.91104 0.91792 0.90301 0.87238 0.90924 0.96272 0.89596 0.94506 0.94046 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.11 -2.06 5.83 30.60 0.18 -1.88 16 3 C -0.11 -2.63 4.90 30.60 0.15 -2.48 16 4 C 0.19 5.56 2.66 29.85 0.08 5.63 16 5 H 0.11 2.76 7.79 -2.39 -0.02 2.75 16 6 O -0.38 -11.08 9.87 -148.98 -1.47 -12.55 16 7 C 0.02 0.52 10.81 113.37 1.23 1.75 16 8 C 0.13 5.33 7.06 138.46 0.98 6.31 16 9 N -0.40 -17.29 12.16 -60.30 -0.73 -18.02 16 10 O 0.06 2.60 11.31 74.87 0.85 3.44 16 11 C 0.23 10.94 6.96 88.38 0.61 11.56 16 12 C 0.13 6.31 2.77 -12.29 -0.03 6.27 16 13 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 14 C -0.13 -5.83 8.95 71.98 0.64 -5.19 16 15 C -0.55 -29.20 8.55 25.60 0.22 -28.99 16 16 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 17 C 0.03 1.73 5.30 84.65 0.45 2.18 16 18 N -0.90 -47.93 11.32 21.45 0.24 -47.69 16 19 Si 0.96 41.48 29.54 68.60 2.03 43.50 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 N -0.52 -22.90 11.55 -303.18 -3.50 -26.40 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.31 7.82 -2.39 -0.02 1.29 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 4.21 6.07 -2.39 -0.01 4.20 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.27 13.61 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -59.13 316.14 3.67 -55.46 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.04 Total: 8.72 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.22 Total: -6.46 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -3.99 Total: -92.11 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.62 Total: -9.11 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -59.13 3.67 -55.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596602776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.577 kcal (2) G-P(sol) polarization free energy of solvation -59.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds