Wall clock time and date at job start Mon Mar 30 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47164 * 2 1 4 4 C 1.53008 * 109.47374 * 175.01011 * 3 2 1 5 5 H 1.09003 * 109.46834 * 305.30118 * 4 3 2 6 6 O 1.42905 * 109.46966 * 65.29301 * 4 3 2 7 7 C 1.42898 * 114.00066 * 205.18505 * 6 4 3 8 8 C 1.50695 * 109.47280 * 185.29561 * 4 3 2 9 9 N 1.29946 * 126.28971 * 285.02256 * 8 4 3 10 10 O 1.21300 * 110.25062 * 180.02562 * 9 8 4 11 11 C 1.33647 * 109.81241 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55074 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47050 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47183 * 60.02891 * 12 11 10 15 15 C 1.50702 * 109.47392 * 300.02918 * 12 11 10 16 16 H 1.08004 * 119.99588 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00363 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99653 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 119.99874 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47552 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47045 * 120.00129 * 19 17 15 22 22 H 1.48498 * 109.47186 * 239.99583 * 19 17 15 23 23 N 1.31124 * 106.89608 * 0.23523 * 11 10 9 24 24 H 1.09001 * 109.47270 * 59.99938 * 1 2 3 25 25 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46978 * 300.00042 * 1 2 3 27 27 H 1.09000 * 109.46607 * 239.99412 * 2 1 3 28 28 H 1.08998 * 109.46769 * 120.00154 * 2 1 3 29 29 H 1.08999 * 109.47886 * 55.00673 * 3 2 1 30 30 H 1.09007 * 109.47279 * 295.00570 * 3 2 1 31 31 H 1.08998 * 109.46893 * 64.98198 * 7 6 4 32 32 H 1.08998 * 109.46664 * 184.98129 * 7 6 4 33 33 H 1.09005 * 109.46787 * 304.98347 * 7 6 4 34 34 H 1.09000 * 109.46831 * 179.97438 * 14 12 11 35 35 H 1.08999 * 109.47247 * 299.99694 * 14 12 11 36 36 H 1.08999 * 109.46843 * 59.99897 * 14 12 11 37 37 H 0.96999 * 119.99449 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4443 0.1255 5 1 3.8575 0.8754 1.0080 6 8 4.1394 0.8464 -1.0385 7 6 5.4343 0.2818 -0.8231 8 6 4.0565 2.8628 0.2563 9 7 4.1344 3.7409 -0.6984 10 8 4.5705 4.7888 -0.2705 11 6 4.8192 4.6754 1.0377 12 6 5.3682 5.7477 1.9431 13 1 5.4615 5.3554 2.9558 14 6 4.4189 6.9475 1.9465 15 6 6.7231 6.1806 1.4452 16 1 7.1443 5.7250 0.5611 17 6 7.4249 7.1582 2.1181 18 7 6.9117 7.7132 3.1942 19 14 9.1040 7.6951 1.5003 20 1 9.4524 6.9241 0.2800 21 1 9.0724 9.1443 1.1774 22 1 10.1218 7.4446 2.5522 23 7 4.4996 3.4511 1.3817 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6056 1.9815 0.8418 30 1 1.7516 1.9298 -0.9314 31 1 5.3552 -0.5533 -0.1271 32 1 5.8384 -0.0724 -1.7713 33 1 6.0967 1.0406 -0.4064 34 1 4.8158 7.7229 2.6018 35 1 4.3255 7.3399 0.9339 36 1 3.4389 6.6344 2.3067 37 1 7.4054 8.4012 3.6674 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596602778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:28 Heat of formation + Delta-G solvation = -20.069971 kcal Electronic energy + Delta-G solvation = -18993.726795 eV Core-core repulsion = 15966.264524 eV Total energy + Delta-G solvation = -3027.462271 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.48029 -39.73252 -37.08171 -36.41295 -35.64967 -33.83578 -31.73509 -30.51014 -27.43931 -27.38382 -26.06693 -25.25435 -23.71071 -22.20648 -21.44491 -19.18972 -18.61956 -18.05099 -17.79990 -16.81435 -16.70619 -16.39965 -15.71248 -15.59298 -14.86672 -14.50442 -14.30941 -13.77229 -13.55906 -13.30247 -13.18310 -13.01002 -12.89338 -12.76637 -12.57559 -12.35884 -12.30686 -12.17924 -12.02315 -11.94551 -11.88509 -11.54345 -11.34283 -11.08154 -10.72079 -10.57937 -8.23545 -6.40087 0.22933 1.21377 1.42922 1.46171 1.56901 2.03496 2.35487 2.43587 2.70962 3.06472 3.29658 3.74038 3.82881 4.09054 4.22618 4.28628 4.37694 4.41336 4.63312 4.67630 4.68557 4.72416 4.73974 4.84951 4.85686 4.95552 5.01244 5.02419 5.21088 5.30591 5.39413 5.45040 5.63437 5.81494 5.92308 6.02933 6.61537 7.22803 7.29353 8.82448 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.033847 B = 0.004850 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.046377 B = 5772.266767 C = 6269.502743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.105 4.105 4 C 0.187 3.813 5 H 0.105 0.895 6 O -0.378 6.378 7 C 0.023 3.977 8 C 0.134 3.866 9 N -0.398 5.398 10 O 0.056 5.944 11 C 0.234 3.766 12 C 0.126 3.874 13 H 0.056 0.944 14 C -0.127 4.127 15 C -0.544 4.544 16 H 0.050 0.950 17 C 0.033 3.967 18 N -0.903 5.903 19 Si 0.963 3.037 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.275 1.275 23 N -0.520 5.520 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.017 0.983 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -12.805 -4.108 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.143 4.143 4 C 0.127 3.873 5 H 0.122 0.878 6 O -0.295 6.295 7 C -0.073 4.073 8 C -0.141 4.141 9 N -0.112 5.112 10 O 0.003 5.997 11 C 0.015 3.985 12 C 0.106 3.894 13 H 0.074 0.926 14 C -0.186 4.186 15 C -0.583 4.583 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.540 5.540 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.197 1.197 22 H -0.200 1.200 23 N -0.255 5.255 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.036 0.964 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.930 -13.195 -4.708 16.098 hybrid contribution 1.320 0.814 0.113 1.555 sum -6.610 -12.381 -4.595 14.768 Atomic orbital electron populations 1.21763 0.94556 1.02563 1.01911 1.21430 0.96724 0.93733 1.03101 1.21686 0.89360 1.00261 1.02989 1.20559 0.95038 0.81218 0.90481 0.87763 1.87965 1.33447 1.74491 1.33636 1.23032 0.83085 0.97086 1.04063 1.27166 1.00369 1.01779 0.84739 1.74534 1.18765 0.93874 1.24021 1.85267 1.59109 1.30082 1.25206 1.29924 0.90775 0.94666 0.83132 1.17660 0.94255 0.86647 0.90849 0.92571 1.21702 0.95998 0.99289 1.01610 1.21056 1.01600 1.22785 1.12840 0.93202 1.25556 1.01461 0.95258 0.94613 1.69938 1.39244 1.26686 1.18144 0.85425 0.79137 0.78352 0.78299 1.19943 1.19700 1.20021 1.71945 1.20296 1.05454 1.27821 0.92932 0.91154 0.92557 0.91137 0.90788 0.90250 0.91744 0.90910 0.87387 0.96388 0.89599 0.94027 0.94506 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.11 -2.06 5.78 30.59 0.18 -1.89 16 3 C -0.10 -2.60 4.90 30.59 0.15 -2.45 16 4 C 0.19 5.57 2.65 29.85 0.08 5.65 16 5 H 0.10 2.75 7.89 -2.39 -0.02 2.73 16 6 O -0.38 -11.06 9.99 -148.98 -1.49 -12.55 16 7 C 0.02 0.56 10.80 113.37 1.22 1.78 16 8 C 0.13 5.27 6.82 138.46 0.94 6.22 16 9 N -0.40 -17.22 12.16 -60.32 -0.73 -17.96 16 10 O 0.06 2.59 11.31 74.79 0.85 3.44 16 11 C 0.23 10.93 6.96 88.38 0.61 11.54 16 12 C 0.13 6.27 2.77 -12.29 -0.03 6.23 16 13 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 14 C -0.13 -5.82 8.95 71.98 0.64 -5.18 16 15 C -0.54 -29.05 8.55 25.60 0.22 -28.84 16 16 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 17 C 0.03 1.70 5.30 84.66 0.45 2.15 16 18 N -0.90 -47.84 11.32 21.45 0.24 -47.59 16 19 Si 0.96 41.50 29.54 68.60 2.03 43.52 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 N -0.52 -22.84 11.55 -303.20 -3.50 -26.34 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.02 0.51 7.95 -2.38 -0.02 0.49 16 34 H 0.09 4.21 6.07 -2.39 -0.01 4.19 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 Total: -1.00 -58.96 316.06 3.61 -55.34 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.04 Total: 8.57 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.18 Total: -6.42 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.99 Total: -91.90 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.64 Total: -9.11 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -58.96 3.61 -55.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596602778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.270 kcal (2) G-P(sol) polarization free energy of solvation -58.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds