Wall clock time and date at job start Mon Mar 30 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47381 * 2 1 4 4 C 1.50705 * 109.47115 * 240.00106 * 2 1 3 5 5 H 1.08005 * 119.99939 * 241.32632 * 4 2 1 6 6 C 1.37870 * 120.00006 * 61.32439 * 4 2 1 7 7 N 1.31514 * 119.99949 * 194.01004 * 6 4 2 8 8 Si 1.86804 * 120.00110 * 14.00666 * 6 4 2 9 9 H 1.48493 * 109.47273 * 84.54461 * 8 6 4 10 10 H 1.48503 * 109.46942 * 204.54592 * 8 6 4 11 11 H 1.48495 * 109.46892 * 324.54311 * 8 6 4 12 12 C 1.53000 * 109.46947 * 120.00388 * 2 1 3 13 13 S 1.81404 * 109.46924 * 299.99622 * 12 2 1 14 14 C 1.81397 * 102.99768 * 180.02562 * 13 12 2 15 15 C 1.53008 * 109.46993 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.67052 * 308.23371 * 15 14 13 17 17 C 1.54891 * 110.75612 * 185.00146 * 15 14 13 18 18 C 1.54262 * 104.19336 * 203.74316 * 17 15 14 19 19 H 1.09005 * 117.40937 * 163.59260 * 18 17 15 20 20 C 1.53003 * 118.20014 * 318.21752 * 18 17 15 21 21 C 1.53874 * 106.60021 * 23.60910 * 18 17 15 22 22 H 1.09001 * 121.32892 * 138.63397 * 21 18 17 23 23 C 1.54262 * 106.60005 * 0.02562 * 21 18 17 24 24 H 1.08995 * 109.47395 * 309.40712 * 1 2 3 25 25 H 1.08999 * 109.46847 * 69.40897 * 1 2 3 26 26 H 1.09003 * 109.47436 * 189.40990 * 1 2 3 27 27 H 1.08995 * 109.47573 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47232 * 300.00466 * 3 2 1 29 29 H 1.09007 * 109.47101 * 60.00142 * 3 2 1 30 30 H 0.97006 * 119.99690 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46840 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.47345 * 60.00100 * 12 2 1 33 33 H 1.08999 * 109.47228 * 299.99714 * 14 13 12 34 34 H 1.08998 * 109.47535 * 60.00350 * 14 13 12 35 35 H 1.09004 * 110.48355 * 322.42122 * 17 15 14 36 36 H 1.09004 * 110.48516 * 85.06390 * 17 15 14 37 37 H 1.08999 * 117.45851 * 201.21992 * 20 18 17 38 38 H 1.08995 * 117.45576 * 346.04164 * 20 18 17 39 39 H 1.08995 * 110.48938 * 217.71454 * 23 21 18 40 40 H 1.09000 * 110.48784 * 95.06318 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6355 -1.6009 -1.1316 6 6 1.7219 -0.2236 -2.4825 7 7 1.9148 -0.9731 -3.5458 8 14 1.0274 1.5005 -2.6686 9 1 2.1415 2.4813 -2.7091 10 1 0.2464 1.5861 -3.9287 11 1 0.1419 1.8044 -1.5159 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1338 2.7304 14 6 2.1331 -0.8518 4.0839 15 6 1.7071 -0.2504 5.4249 16 1 1.9342 0.8151 5.4581 17 6 2.3881 -0.9937 6.6009 18 6 1.4558 -0.7350 7.8024 19 1 1.5741 -1.3757 8.6763 20 6 0.8736 0.6691 7.9766 21 6 0.0656 -0.4233 7.2210 22 1 -0.8409 -0.8268 7.6721 23 6 0.2015 -0.5040 5.6865 24 1 -0.3634 0.6523 0.7940 25 1 -0.3633 0.3614 -0.9620 26 1 -0.3634 -1.0138 0.1680 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6961 -0.6307 -4.4267 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -1.7490 1.2492 33 1 1.7677 -1.8763 4.0132 34 1 3.2207 -0.8482 4.0129 35 1 2.4527 -2.0614 6.3910 36 1 3.3788 -0.5806 6.7908 37 1 0.5243 0.9486 8.9706 38 1 1.3186 1.4738 7.3915 39 1 -0.4033 0.2667 5.2089 40 1 -0.0872 -1.4926 5.3294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600576614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:17 Heat of formation + Delta-G solvation = 5.862096 kcal Electronic energy + Delta-G solvation = -16824.863531 eV Core-core repulsion = 14344.818974 eV Total energy + Delta-G solvation = -2480.044558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.140 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49005 -38.19545 -34.05689 -33.94964 -29.16054 -28.84744 -28.01872 -27.61332 -26.99948 -23.41048 -21.11439 -20.57831 -20.17012 -18.14686 -17.43397 -17.20650 -16.72561 -16.12649 -15.38445 -14.97870 -14.92577 -14.71278 -14.43311 -14.09927 -13.89322 -13.76385 -13.59335 -13.08167 -12.89661 -12.57656 -12.30638 -12.19832 -12.05803 -11.96190 -11.74941 -11.69752 -11.48726 -11.16921 -10.87277 -10.70886 -10.46918 -10.43484 -10.37692 -8.45543 -8.32897 -6.32945 0.85607 1.33709 1.37275 1.47405 1.83693 2.32613 2.80008 3.03814 3.52755 3.66673 3.78799 4.04961 4.06467 4.19041 4.21323 4.36524 4.48315 4.50575 4.57102 4.66270 4.72496 4.73830 4.80546 4.82213 4.88164 4.96013 4.97074 5.05528 5.06583 5.10587 5.21938 5.22431 5.36590 5.37122 5.43082 5.47081 5.68168 5.75592 6.28803 6.70208 7.32144 8.83820 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.052148 B = 0.004356 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.807007 B = 6426.753868 C = 6594.972553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 C -0.144 4.144 4 C -0.513 4.513 5 H 0.035 0.965 6 C 0.023 3.977 7 N -0.943 5.943 8 Si 0.937 3.063 9 H -0.281 1.281 10 H -0.311 1.311 11 H -0.218 1.218 12 C -0.044 4.044 13 S -0.277 6.277 14 C -0.076 4.076 15 C -0.074 4.074 16 H 0.078 0.922 17 C -0.085 4.085 18 C -0.163 4.163 19 H 0.120 0.880 20 C -0.156 4.156 21 C -0.176 4.176 22 H 0.117 0.883 23 C -0.088 4.088 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.265 0.735 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 2.707 23.105 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 C -0.201 4.201 4 C -0.552 4.552 5 H 0.053 0.947 6 C -0.175 4.175 7 N -0.582 5.582 8 Si 0.767 3.233 9 H -0.208 1.208 10 H -0.241 1.241 11 H -0.142 1.142 12 C -0.192 4.192 13 S -0.049 6.049 14 C -0.224 4.224 15 C -0.094 4.094 16 H 0.096 0.904 17 C -0.124 4.124 18 C -0.181 4.181 19 H 0.138 0.862 20 C -0.193 4.193 21 C -0.194 4.194 22 H 0.135 0.865 23 C -0.125 4.125 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.613 3.561 22.990 23.410 hybrid contribution 0.765 -0.765 -1.098 1.542 sum -1.848 2.796 21.892 22.147 Atomic orbital electron populations 1.22182 0.96581 1.00473 1.00029 1.18269 0.93329 0.92586 0.91214 1.22295 1.00830 0.97305 0.99671 1.21092 1.32763 1.11067 0.90270 0.94704 1.25729 0.95349 1.01037 0.95390 1.70087 1.50783 1.38026 0.99353 0.86419 0.79467 0.80800 0.76605 1.20819 1.24055 1.14189 1.23293 1.01831 1.00395 0.93664 1.86615 1.71733 1.45111 1.01402 1.23437 1.03066 1.01088 0.94772 1.21832 0.96194 0.99938 0.91406 0.90356 1.21977 0.98278 1.00657 0.91494 1.23196 0.95472 0.99591 0.99841 0.86164 1.23374 1.02513 0.91837 1.01599 1.23577 0.96180 1.05517 0.94171 0.86504 1.21930 0.95182 1.01752 0.93648 0.92589 0.94115 0.93812 0.93241 0.95118 0.91521 0.92615 0.91500 0.91680 0.90055 0.89887 0.90236 0.90633 0.87054 0.89421 0.92151 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 7.41 71.98 0.53 -5.27 16 2 C 0.05 2.16 0.52 -52.93 -0.03 2.13 16 3 C -0.14 -6.10 7.46 71.98 0.54 -5.56 16 4 C -0.51 -28.69 8.62 25.60 0.22 -28.47 16 5 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 6 C 0.02 1.32 5.32 84.65 0.45 1.77 16 7 N -0.94 -58.90 13.96 21.44 0.30 -58.60 16 8 Si 0.94 45.02 22.79 68.60 1.56 46.59 16 9 H -0.28 -13.20 7.10 99.48 0.71 -12.49 16 10 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 11 H -0.22 -9.42 4.65 99.48 0.46 -8.96 16 12 C -0.04 -1.70 4.87 71.98 0.35 -1.35 16 13 S -0.28 -8.80 18.71 -56.49 -1.06 -9.86 16 14 C -0.08 -1.82 5.42 71.98 0.39 -1.43 16 15 C -0.07 -1.50 2.40 -9.49 -0.02 -1.53 16 16 H 0.08 1.71 7.42 -2.39 -0.02 1.69 16 17 C -0.08 -1.38 6.21 31.67 0.20 -1.19 16 18 C -0.16 -2.46 6.97 -10.07 -0.07 -2.53 16 19 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 20 C -0.16 -2.36 9.94 31.44 0.31 -2.05 16 21 C -0.18 -2.98 7.16 -9.22 -0.07 -3.04 16 22 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.09 -1.79 5.93 31.68 0.19 -1.60 16 24 H 0.06 2.15 7.29 -2.39 -0.02 2.13 16 25 H 0.04 1.82 4.30 -2.39 -0.01 1.81 16 26 H 0.04 1.84 8.12 -2.39 -0.02 1.82 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.03 1.34 2.25 -2.39 -0.01 1.34 16 29 H 0.07 2.51 6.92 -2.38 -0.02 2.50 16 30 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.23 8.05 -2.38 -0.02 1.21 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.44 7.27 -2.39 -0.02 1.42 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 Total: -1.00 -62.07 309.63 4.54 -57.53 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.75 Total: 14.44 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 2.99 Total: -50.10 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.56 Total: 46.59 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.06 Total: -9.86 kcal Total: -62.07 4.54 -57.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600576614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.392 kcal (2) G-P(sol) polarization free energy of solvation -62.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds