Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52266 * 2 1 4 4 C 1.53127 * 109.52432 * 239.87667 * 2 1 3 5 5 C 1.53042 * 109.27596 * 182.44022 * 4 2 1 6 6 N 1.46843 * 109.52278 * 59.17923 * 5 4 2 7 7 C 1.46895 * 110.99970 * 174.15687 * 6 5 4 8 8 C 1.53001 * 109.47473 * 294.21132 * 7 6 5 9 9 H 1.08998 * 109.46932 * 54.99561 * 8 7 6 10 10 C 1.47205 * 109.46906 * 295.00033 * 8 7 6 11 11 N 6.02638 * 123.50553 * 187.92276 * 2 1 3 12 12 C 1.52993 * 109.47430 * 174.99975 * 8 7 6 13 13 C 1.50701 * 109.47370 * 185.00217 * 12 8 7 14 14 H 1.08001 * 119.99680 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00433 * 180.02562 * 13 12 8 16 16 N 1.31515 * 119.99654 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00150 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47501 * 90.00020 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99775 * 17 15 13 20 20 H 1.48499 * 109.47265 * 329.99949 * 17 15 13 21 21 C 1.46847 * 111.20124 * 298.25596 * 6 5 4 22 22 C 1.53034 * 109.51345 * 61.74903 * 21 6 5 23 23 H 1.08997 * 109.50952 * 60.75924 * 22 21 6 24 24 F 1.39903 * 109.50477 * 180.87670 * 22 21 6 25 25 H 1.09005 * 109.47312 * 180.12063 * 1 2 3 26 26 H 1.09000 * 109.47378 * 300.12437 * 1 2 3 27 27 H 1.09004 * 109.46820 * 60.12659 * 1 2 3 28 28 H 1.08997 * 109.49981 * 62.49764 * 4 2 1 29 29 H 1.08999 * 109.50124 * 302.38028 * 4 2 1 30 30 H 1.08993 * 109.46299 * 299.16259 * 5 4 2 31 31 H 1.09000 * 109.45057 * 179.19029 * 5 4 2 32 32 H 1.09000 * 109.47118 * 54.20800 * 7 6 5 33 33 H 1.09003 * 109.47534 * 174.20891 * 7 6 5 34 34 H 1.09007 * 109.47319 * 304.99954 * 12 8 7 35 35 H 1.08994 * 109.47695 * 64.99557 * 12 8 7 36 36 H 0.96996 * 119.99879 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46481 * 181.76055 * 21 6 5 38 38 H 1.08994 * 109.46283 * 301.73908 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0418 -0.7243 -1.2483 5 6 3.5709 -0.7744 -1.2121 6 7 4.0103 -1.4788 -0.0009 7 6 5.4670 -1.6677 -0.0009 8 6 5.8590 -2.6113 -1.1398 9 1 5.4708 -2.2244 -2.0820 10 6 5.2932 -3.9466 -0.8874 11 7 4.8567 -4.9770 -0.6926 12 6 7.3837 -2.7100 -1.2185 13 6 7.7723 -3.5402 -2.4147 14 1 7.0082 -3.9561 -3.0545 15 6 9.1034 -3.7696 -2.6916 16 7 10.0339 -3.2635 -1.9121 17 14 9.5850 -4.7992 -4.1739 18 1 9.7471 -3.9174 -5.3577 19 1 10.8666 -5.4965 -3.8970 20 1 8.5243 -5.8024 -4.4455 21 6 3.5708 -0.7759 1.2112 22 6 2.0417 -0.7261 1.2472 23 1 1.6448 -1.7410 1.2662 24 9 1.6236 -0.0389 2.3919 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5158 0.8889 27 1 -0.3633 0.5119 -0.8912 28 1 1.7162 -0.1877 -2.1394 29 1 1.6448 -1.7392 -1.2685 30 1 3.9675 0.2408 -1.2058 31 1 3.9378 -1.3021 -2.0924 32 1 5.9582 -0.7049 -0.1416 33 1 5.7777 -2.0985 0.9509 34 1 7.8080 -1.7107 -1.3165 35 1 7.7648 -3.1790 -0.3114 36 1 10.9703 -3.4245 -2.1072 37 1 3.9378 -1.3046 2.0909 38 1 3.9672 0.2394 1.2061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611501382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = -46.290644 kcal Electronic energy + Delta-G solvation = -18884.582468 eV Core-core repulsion = 15868.355973 eV Total energy + Delta-G solvation = -3016.226495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.73232 -39.17171 -36.52572 -34.61236 -33.44962 -31.66950 -30.41378 -28.49363 -26.13242 -23.59509 -23.17519 -21.85723 -21.46909 -20.12494 -16.88781 -16.62244 -16.24562 -15.74054 -15.47581 -15.10717 -14.85637 -14.46256 -13.99221 -13.51301 -13.38505 -12.95038 -12.88189 -12.68227 -12.40356 -12.19991 -11.99266 -11.87176 -11.50456 -11.27222 -11.21107 -11.09105 -10.84950 -10.76078 -10.62790 -10.51596 -10.29799 -10.11883 -9.56068 -9.24693 -8.48000 -8.32219 -6.11746 -4.15059 3.27669 3.34934 3.39424 3.65844 3.77215 3.83680 4.31037 4.39713 4.45505 4.54135 4.69396 4.88394 4.98419 5.20768 5.22021 5.26558 5.35333 5.39449 5.44887 5.52503 5.62448 5.67748 5.69234 5.78271 5.89206 5.95560 5.98235 5.99331 6.20132 6.32888 6.46605 7.03676 7.07874 7.39431 7.49882 7.83329 8.20532 8.56463 8.89640 9.50650 10.99192 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.004353 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.052040 B = 6431.350908 C = 6559.434606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 H 0.078 0.922 4 C -0.110 4.110 5 C 0.045 3.955 6 N -0.539 5.539 7 C 0.064 3.936 8 C 0.011 3.989 9 H 0.101 0.899 10 C 0.255 3.745 11 N -0.478 5.478 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.033 3.967 22 C 0.097 3.903 23 H 0.091 0.909 24 F -0.214 7.214 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 9.911 3.459 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.083 4.083 6 N -0.263 5.263 7 C -0.064 4.064 8 C -0.011 4.011 9 H 0.118 0.882 10 C -0.061 4.061 11 N -0.155 5.155 12 C -0.008 4.008 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.095 4.095 22 C 0.061 3.939 23 H 0.109 0.891 24 F -0.195 7.195 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.354 7.918 3.810 17.691 hybrid contribution 0.990 0.652 -0.810 1.435 sum -14.364 8.569 3.000 16.993 Atomic orbital electron populations 1.21805 0.94319 1.02248 1.02109 1.21773 0.96771 1.00248 0.94831 0.90394 1.21618 0.95151 1.01384 0.96615 1.22266 0.95194 0.97048 0.93785 1.61848 1.13997 1.49171 1.01324 1.22238 0.85353 0.98886 0.99955 1.19258 0.99955 0.83716 0.98210 0.88154 1.28830 0.90977 0.94388 0.91948 1.80982 1.12028 1.12489 1.10026 1.19178 0.84561 0.98696 0.98330 1.21129 0.92037 1.32502 1.10797 0.92496 1.24948 0.96601 0.95721 0.96650 1.69936 1.00433 1.44826 1.37821 0.86592 0.78076 0.80546 0.82885 1.20472 1.21135 1.19824 1.22551 0.94150 0.98217 0.94617 1.21597 0.94780 0.96045 0.81501 0.89111 1.92785 1.91434 1.82235 1.53032 0.92379 0.92277 0.92214 0.90711 0.90670 0.94283 0.89319 0.92572 0.90013 0.94449 0.95519 0.92774 0.89627 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.10 37.16 0.34 -0.90 16 2 C -0.12 -1.11 2.57 -90.49 -0.23 -1.34 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.06 5.38 -26.64 -0.14 -1.20 16 5 C 0.04 0.50 5.30 -3.83 -0.02 0.48 16 6 N -0.54 -6.94 4.36 -234.68 -1.02 -7.97 16 7 C 0.06 0.92 4.32 -3.83 -0.02 0.90 16 8 C 0.01 0.19 2.13 -93.41 -0.20 -0.01 16 9 H 0.10 1.67 6.22 -51.93 -0.32 1.35 16 10 C 0.26 5.25 13.67 -20.76 -0.28 4.96 16 11 N -0.48 -10.73 18.54 42.15 0.78 -9.95 16 12 C 0.03 0.70 4.42 -27.89 -0.12 0.58 16 13 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16 14 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.03 0.38 5.20 -3.84 -0.02 0.36 16 22 C 0.10 1.07 3.42 -26.65 -0.09 0.97 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 F -0.21 -2.61 16.68 2.25 0.04 -2.58 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.05 6.12 -51.93 -0.32 0.73 16 32 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 33 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 34 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -29.43 314.95 -6.99 -36.42 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.06 Total: -4.51 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.19 Total: -7.69 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.50 Total: -42.47 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.43 -6.99 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611501382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.868 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds