Wall clock time and date at job start Mon Mar 30 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.52266 * 2 1 4 4 C 1.53127 * 109.52432 * 239.87667 * 2 1 3 5 5 C 1.53042 * 109.27596 * 182.44022 * 4 2 1 6 6 N 1.46843 * 109.52278 * 59.17923 * 5 4 2 7 7 C 1.46895 * 110.99970 * 174.15687 * 6 5 4 8 8 C 1.53001 * 109.47473 * 294.21132 * 7 6 5 9 9 H 1.08998 * 109.46932 * 54.99561 * 8 7 6 10 10 C 1.47205 * 109.46906 * 295.00033 * 8 7 6 11 11 N 6.02638 * 123.50553 * 187.92276 * 2 1 3 12 12 C 1.52993 * 109.47430 * 174.99975 * 8 7 6 13 13 C 1.50701 * 109.47370 * 185.00217 * 12 8 7 14 14 H 1.08001 * 119.99680 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00433 * 180.02562 * 13 12 8 16 16 N 1.31515 * 119.99654 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00150 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47501 * 90.00020 * 17 15 13 19 19 H 1.48504 * 109.47202 * 209.99775 * 17 15 13 20 20 H 1.48499 * 109.47265 * 329.99949 * 17 15 13 21 21 C 1.46847 * 111.20124 * 298.25596 * 6 5 4 22 22 C 1.53034 * 109.51345 * 61.74903 * 21 6 5 23 23 H 1.08997 * 109.50952 * 60.75924 * 22 21 6 24 24 F 1.39903 * 109.50477 * 180.87670 * 22 21 6 25 25 H 1.09005 * 109.47312 * 180.12063 * 1 2 3 26 26 H 1.09000 * 109.47378 * 300.12437 * 1 2 3 27 27 H 1.09004 * 109.46820 * 60.12659 * 1 2 3 28 28 H 1.08997 * 109.49981 * 62.49764 * 4 2 1 29 29 H 1.08999 * 109.50124 * 302.38028 * 4 2 1 30 30 H 1.08993 * 109.46299 * 299.16259 * 5 4 2 31 31 H 1.09000 * 109.45057 * 179.19029 * 5 4 2 32 32 H 1.09000 * 109.47118 * 54.20800 * 7 6 5 33 33 H 1.09003 * 109.47534 * 174.20891 * 7 6 5 34 34 H 1.09007 * 109.47319 * 304.99954 * 12 8 7 35 35 H 1.08994 * 109.47695 * 64.99557 * 12 8 7 36 36 H 0.96996 * 119.99879 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46481 * 181.76055 * 21 6 5 38 38 H 1.08994 * 109.46283 * 301.73908 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0418 -0.7243 -1.2483 5 6 3.5709 -0.7744 -1.2121 6 7 4.0103 -1.4788 -0.0009 7 6 5.4670 -1.6677 -0.0009 8 6 5.8590 -2.6113 -1.1398 9 1 5.4708 -2.2244 -2.0820 10 6 5.2932 -3.9466 -0.8874 11 7 4.8567 -4.9770 -0.6926 12 6 7.3837 -2.7100 -1.2185 13 6 7.7723 -3.5402 -2.4147 14 1 7.0082 -3.9561 -3.0545 15 6 9.1034 -3.7696 -2.6916 16 7 10.0339 -3.2635 -1.9121 17 14 9.5850 -4.7992 -4.1739 18 1 9.7471 -3.9174 -5.3577 19 1 10.8666 -5.4965 -3.8970 20 1 8.5243 -5.8024 -4.4455 21 6 3.5708 -0.7759 1.2112 22 6 2.0417 -0.7261 1.2472 23 1 1.6448 -1.7410 1.2662 24 9 1.6236 -0.0389 2.3919 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5158 0.8889 27 1 -0.3633 0.5119 -0.8912 28 1 1.7162 -0.1877 -2.1394 29 1 1.6448 -1.7392 -1.2685 30 1 3.9675 0.2408 -1.2058 31 1 3.9378 -1.3021 -2.0924 32 1 5.9582 -0.7049 -0.1416 33 1 5.7777 -2.0985 0.9509 34 1 7.8080 -1.7107 -1.3165 35 1 7.7648 -3.1790 -0.3114 36 1 10.9703 -3.4245 -2.1072 37 1 3.9378 -1.3046 2.0909 38 1 3.9672 0.2394 1.2061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611501382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:27 Heat of formation + Delta-G solvation = -62.746814 kcal Electronic energy + Delta-G solvation = -18885.296061 eV Core-core repulsion = 15868.355973 eV Total energy + Delta-G solvation = -3016.940088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.64994 -40.17628 -37.97691 -35.91940 -35.14393 -33.27436 -31.28896 -29.69337 -27.62963 -24.80500 -24.19697 -23.44117 -22.53086 -20.96086 -18.56767 -18.18571 -17.37219 -16.73039 -16.63244 -16.37067 -15.92642 -15.81616 -15.14405 -14.68969 -14.59367 -14.29185 -14.14319 -13.82288 -13.60933 -13.56364 -13.23171 -13.07044 -12.97104 -12.78025 -12.57775 -12.44652 -12.35160 -12.04926 -11.88402 -11.66415 -11.43464 -11.37192 -11.11758 -10.99255 -10.53947 -9.30782 -8.18906 -6.27045 1.40912 1.43351 1.52241 2.06850 2.14512 2.42003 2.74821 3.16842 3.33737 3.51342 3.62458 3.73595 3.86897 4.08919 4.19653 4.31755 4.40930 4.46073 4.58652 4.65720 4.72626 4.77171 4.78368 4.84427 4.89071 4.95856 5.07034 5.10571 5.20909 5.31619 5.43856 5.47281 5.61902 5.79651 5.99514 6.12682 6.21623 6.83930 6.94034 7.41776 8.92074 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.004353 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.052040 B = 6431.350908 C = 6559.434606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.104 4.104 5 C 0.040 3.960 6 N -0.549 5.549 7 C 0.074 3.926 8 C 0.022 3.978 9 H 0.120 0.880 10 C 0.266 3.734 11 N -0.514 5.514 12 C 0.037 3.963 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.035 3.965 22 C 0.097 3.903 23 H 0.085 0.915 24 F -0.221 7.221 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.001 0.999 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 10.938 2.599 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.102 0.898 4 C -0.142 4.142 5 C -0.087 4.087 6 N -0.274 5.274 7 C -0.055 4.055 8 C 0.000 4.000 9 H 0.137 0.863 10 C -0.050 4.050 11 N -0.191 5.191 12 C -0.002 4.002 13 C -0.576 4.576 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.774 3.226 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.093 4.093 22 C 0.060 3.940 23 H 0.103 0.897 24 F -0.202 7.202 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.324 8.953 2.946 18.850 hybrid contribution 1.270 0.336 -0.518 1.412 sum -15.054 9.290 2.428 17.855 Atomic orbital electron populations 1.21787 0.93452 1.02329 1.02662 1.21748 0.97462 1.00165 0.93775 0.89847 1.21588 0.93901 1.01154 0.97522 1.22364 0.96325 0.97363 0.92643 1.61774 1.12719 1.50390 1.02547 1.22049 0.86828 0.98544 0.98083 1.19204 0.96658 0.83330 1.00763 0.86277 1.29325 0.90231 0.94597 0.90855 1.80981 1.13184 1.13517 1.11432 1.18999 0.87725 0.97605 0.95836 1.21542 0.92056 1.32415 1.11626 0.92750 1.25694 0.96894 0.96921 0.99135 1.70030 1.00693 1.46249 1.39400 0.85701 0.77410 0.79149 0.80362 1.19093 1.21130 1.20083 1.22535 0.94587 0.98414 0.93800 1.21632 0.94359 0.96023 0.81944 0.89705 1.92771 1.91465 1.82355 1.53625 0.92554 0.92623 0.90779 0.88689 0.91690 0.93074 0.89892 0.90929 0.90459 0.94577 0.98066 0.92728 0.90084 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.10 71.98 0.65 -1.47 16 2 C -0.11 -1.88 2.57 -10.71 -0.03 -1.90 16 3 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.10 -1.75 5.38 30.65 0.16 -1.58 16 5 C 0.04 0.81 5.30 86.33 0.46 1.27 16 6 N -0.55 -13.23 4.36 -896.39 -3.91 -17.13 16 7 C 0.07 2.01 4.32 86.30 0.37 2.39 16 8 C 0.02 0.77 2.13 -12.60 -0.03 0.74 16 9 H 0.12 3.75 6.22 -2.39 -0.01 3.73 16 10 C 0.27 10.79 13.67 89.44 1.22 12.01 16 11 N -0.51 -22.94 18.54 20.01 0.37 -22.57 16 12 C 0.04 1.68 4.42 29.85 0.13 1.81 16 13 C -0.54 -28.07 8.60 25.60 0.22 -27.85 16 14 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 15 C 0.01 0.68 5.46 84.65 0.46 1.14 16 16 N -0.92 -52.54 13.29 21.45 0.28 -52.26 16 17 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 C 0.04 0.75 5.20 86.32 0.45 1.20 16 22 C 0.10 1.98 3.42 30.65 0.10 2.08 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 F -0.22 -5.11 16.68 44.97 0.75 -4.36 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.05 0.86 7.88 -2.39 -0.02 0.84 16 27 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.76 6.12 -2.39 -0.01 1.75 16 32 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 33 H 0.08 2.19 7.99 -2.39 -0.02 2.17 16 34 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.08 1.79 8.02 -2.39 -0.02 1.78 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -61.75 314.95 4.74 -57.01 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.03 Total: 4.51 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.19 Total: -10.16 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -3.25 Total: -91.97 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.75 Total: -4.36 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -61.75 4.74 -57.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611501382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.733 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds