Wall clock time and date at job start Mon Mar 30 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.52451 * 2 1 4 4 C 1.53117 * 109.51710 * 239.87606 * 2 1 3 5 5 C 1.53039 * 109.27804 * 182.44255 * 4 2 1 6 6 N 1.46845 * 109.52472 * 59.17430 * 5 4 2 7 7 C 1.46900 * 110.99982 * 174.16112 * 6 5 4 8 8 C 1.53001 * 109.47143 * 176.20813 * 7 6 5 9 9 H 1.09004 * 109.47005 * 301.80699 * 8 7 6 10 10 C 1.47204 * 109.46970 * 61.80475 * 8 7 6 11 11 N 5.88842 * 123.50404 * 161.83729 * 2 1 3 12 12 C 1.52990 * 109.47305 * 181.80573 * 8 7 6 13 13 C 1.50697 * 109.47527 * 174.99992 * 12 8 7 14 14 H 1.08007 * 119.99824 * 0.02562 * 13 12 8 15 15 C 1.37880 * 120.00516 * 180.02562 * 13 12 8 16 16 N 1.31509 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99964 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47565 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47068 * 120.00225 * 17 15 13 20 20 H 1.48498 * 109.47486 * 239.99802 * 17 15 13 21 21 C 1.46847 * 111.20202 * 298.26276 * 6 5 4 22 22 C 1.53042 * 109.51847 * 61.73924 * 21 6 5 23 23 H 1.09001 * 109.50522 * 60.76610 * 22 21 6 24 24 F 1.39901 * 109.49758 * 180.88008 * 22 21 6 25 25 H 1.08997 * 109.47025 * 180.12746 * 1 2 3 26 26 H 1.08998 * 109.46441 * 300.12302 * 1 2 3 27 27 H 1.09000 * 109.46947 * 60.11925 * 1 2 3 28 28 H 1.08998 * 109.50732 * 62.50057 * 4 2 1 29 29 H 1.08997 * 109.50579 * 302.37935 * 4 2 1 30 30 H 1.09007 * 109.45873 * 299.16242 * 5 4 2 31 31 H 1.08994 * 109.45573 * 179.19496 * 5 4 2 32 32 H 1.08995 * 109.46820 * 56.20792 * 7 6 5 33 33 H 1.09001 * 109.47304 * 296.20768 * 7 6 5 34 34 H 1.08998 * 109.47230 * 295.00139 * 12 8 7 35 35 H 1.09000 * 109.47459 * 54.99874 * 12 8 7 36 36 H 0.96998 * 119.99986 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.46215 * 181.75482 * 21 6 5 38 38 H 1.08992 * 109.46136 * 301.72880 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5708 -0.7746 -1.2122 6 7 4.0102 -1.4790 -0.0010 7 6 5.4670 -1.6679 -0.0013 8 6 5.8972 -2.3184 1.3151 9 1 5.5860 -1.6900 2.1496 10 6 5.2669 -3.6431 1.4367 11 7 4.7805 -4.6654 1.5305 12 6 7.4190 -2.4741 1.3337 13 6 7.8538 -3.0006 2.6771 14 1 7.1181 -3.2043 3.4412 15 6 9.1908 -3.2224 2.9309 16 7 10.0865 -2.9748 2.0004 17 14 9.7296 -3.8743 4.5964 18 1 8.5380 -4.0698 5.4607 19 1 10.4289 -5.1721 4.4173 20 1 10.6505 -2.9000 5.2351 21 6 3.5709 -0.7760 1.2111 22 6 2.0418 -0.7259 1.2473 23 1 1.6447 -1.7408 1.2663 24 9 1.6240 -0.0386 2.3920 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3632 0.5158 0.8889 27 1 -0.3633 0.5120 -0.8911 28 1 1.7161 -0.1878 -2.1395 29 1 1.6446 -1.7392 -1.2685 30 1 3.9674 0.2408 -1.2060 31 1 3.9375 -1.3022 -2.0926 32 1 5.9588 -0.7009 -0.1064 33 1 5.7498 -2.3118 -0.8341 34 1 7.7223 -3.1729 0.5541 35 1 7.8856 -1.5054 1.1548 36 1 11.0271 -3.1305 2.1791 37 1 3.9379 -1.3047 2.0907 38 1 3.9675 0.2392 1.2060 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611501383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:31 Heat of formation + Delta-G solvation = -43.832942 kcal Electronic energy + Delta-G solvation = -19013.131543 eV Core-core repulsion = 15997.011622 eV Total energy + Delta-G solvation = -3016.119921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.64530 -39.21670 -36.58084 -34.61404 -33.42915 -31.61563 -30.41906 -28.50951 -26.17090 -23.74951 -23.04722 -21.80621 -21.45414 -20.11741 -16.90961 -16.71532 -16.15289 -15.74469 -15.41221 -15.03386 -14.87032 -14.54027 -13.95129 -13.56655 -13.17157 -13.07470 -12.84706 -12.62952 -12.29393 -12.25371 -12.06120 -11.94139 -11.56078 -11.29731 -11.19566 -11.07914 -10.81892 -10.71409 -10.60370 -10.49798 -10.40240 -10.01981 -9.57416 -9.22454 -8.48148 -8.31182 -6.11735 -4.14929 3.27614 3.35985 3.40735 3.67723 3.72957 3.83188 4.34032 4.39775 4.48703 4.53223 4.73718 4.85871 5.00124 5.19030 5.22639 5.26689 5.34921 5.39599 5.45227 5.54426 5.56966 5.69331 5.72646 5.77661 5.84908 5.94228 5.97558 6.00218 6.18862 6.33120 6.45111 7.04551 7.06200 7.39275 7.49172 7.83544 8.20463 8.53862 8.89864 9.50912 10.99231 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004754 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.935109 B = 5888.558119 C = 6161.759634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 H 0.078 0.922 4 C -0.109 4.109 5 C 0.052 3.948 6 N -0.538 5.538 7 C 0.065 3.935 8 C 0.003 3.997 9 H 0.101 0.899 10 C 0.253 3.747 11 N -0.475 5.475 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.023 3.977 22 C 0.098 3.902 23 H 0.090 0.910 24 F -0.212 7.212 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 8.961 -6.858 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.076 4.076 6 N -0.263 5.263 7 C -0.063 4.063 8 C -0.019 4.019 9 H 0.119 0.881 10 C -0.064 4.064 11 N -0.151 5.151 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.106 4.106 22 C 0.061 3.939 23 H 0.108 0.892 24 F -0.193 7.193 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.423 6.967 -6.728 18.212 hybrid contribution 1.058 0.848 0.969 1.666 sum -14.365 7.814 -5.759 17.337 Atomic orbital electron populations 1.21805 0.94322 1.02236 1.02115 1.21774 0.96772 1.00275 0.94844 0.90366 1.21605 0.95063 1.01370 0.96664 1.22139 0.95313 0.96898 0.93276 1.61891 1.13940 1.49152 1.01319 1.22253 0.85262 1.00305 0.98517 1.19366 0.99404 0.85785 0.97302 0.88092 1.28803 0.91160 0.94493 0.91918 1.80985 1.12045 1.12343 1.09768 1.19174 0.84400 0.98745 0.98392 1.21171 0.92433 1.44220 0.98636 0.92451 1.24945 0.96733 0.95244 0.96989 1.69943 1.01497 1.48410 1.33150 0.86536 0.78772 0.78683 0.84117 1.19643 1.20937 1.20834 1.22732 0.94050 0.98467 0.95330 1.21576 0.94867 0.95956 0.81456 0.89220 1.92791 1.91409 1.82155 1.52959 0.92390 0.92182 0.92298 0.90860 0.90688 0.94467 0.90129 0.92691 0.89621 0.95443 0.94411 0.92827 0.88702 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.10 37.16 0.34 -0.92 16 2 C -0.12 -1.14 2.57 -90.50 -0.23 -1.37 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -0.98 5.38 -26.65 -0.14 -1.13 16 5 C 0.05 0.53 5.46 -3.83 -0.02 0.51 16 6 N -0.54 -7.01 4.38 -234.67 -1.03 -8.03 16 7 C 0.06 0.94 4.52 -3.82 -0.02 0.92 16 8 C 0.00 0.06 1.75 -93.41 -0.16 -0.11 16 9 H 0.10 1.74 6.08 -51.93 -0.32 1.43 16 10 C 0.25 5.23 13.44 -20.76 -0.28 4.95 16 11 N -0.47 -10.66 18.54 42.15 0.78 -9.88 16 12 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 13 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 14 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.02 0.29 4.77 -3.83 -0.02 0.27 16 22 C 0.10 1.17 3.42 -26.65 -0.09 1.08 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 F -0.21 -2.87 16.68 2.25 0.04 -2.83 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.09 1.35 5.70 -51.93 -0.30 1.05 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -29.61 314.01 -6.95 -36.57 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.05 Total: -4.37 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.15 Total: -7.80 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.49 Total: -42.55 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.61 -6.95 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611501383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.264 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds